GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002473-TA|BGIBMGA002473-PA|undefined
         (276 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    48   1e-07
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    25   0.62 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.4  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   7.6  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 47.6 bits (108), Expect = 1e-07
 Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 3/164 (1%)

Query: 70  WFVCTESLSLDEIASSINVIVIQMTMMLKLKNLVQHKDIYRRLATSMESPYFDIRTEKRR 129
           W     + ++ EI+ +   +    T  LK     ++      L   +E+ Y  IRTE ++
Sbjct: 49  WICALVNYNVSEISENFYYLPAMSTGPLKYAIFQKNFTNIVNLTHLLETQYAKIRTENQK 108

Query: 130 QIFEHWVKTHERTLKFLLFLGNGSLAAWYIHPLI-DEFEYNLMVGLRLPFSFDTPLRYLF 188
           +IF+  V    + +K    L   +  A +I P   D  E  L+V    PF +  P+ +  
Sbjct: 109 KIFDESVIFERKVMKNFAILIIPTCVAMFIVPYFQDRREMPLIVW--FPFDYKQPVVFDL 166

Query: 189 TYVIVLIAFNYTAHYVMVTDLIMQSYLIPLICQYAVLADCFENI 232
            Y I+  A    A+  + TD    + LI +  Q  +++D   N+
Sbjct: 167 VYFILAFACISIAYTNVSTDAFFYTCLIQIETQCEIVSDTLRNL 210


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 142 TLKFLLFLGNGSLAAWYIHPLIDEFEYNLMVGLRLPFSFDTPLRYLFTYVIVLIAFN 198
           +L F +F   GSL  ++++   ++   NL+V   +PF  DT L  L    ++ ++FN
Sbjct: 178 SLDFNIFDQVGSLGMFHVNMSHNKL-INLVVAPSVPFEQDTGLGGLQNIKVLDLSFN 233


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/33 (27%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 218  LICQYAVLADCFENILIDCSNDYGDHDMEMHER 250
            ++  +AVL   FEN+++   + + D D + ++R
Sbjct: 1430 IVYGFAVLD--FENLIVKAHDSWADFDNQFYKR 1460


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 187 LFTYVIVLIAFNY 199
           L TY+++LI FN+
Sbjct: 362 LTTYLVILIQFNF 374


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.328    0.140    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,308
Number of Sequences: 317
Number of extensions: 2815
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 276
length of database: 114,650
effective HSP length: 56
effective length of query: 220
effective length of database: 96,898
effective search space: 21317560
effective search space used: 21317560
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 43 (21.4 bits)