GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002473-TA|BGIBMGA002473-PA|undefined
         (276 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    31   0.24 
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    29   0.73 
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    28   1.7  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    26   6.8  
SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom...    25   9.0  

>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 222 YAVLADCFENILIDCSNDYGDHDMEMHERSSDPAFI 257
           +A L  C EN  ++C N   DHD++    S+  +F+
Sbjct: 126 FASLQGCIENPQLECLNQQDDHDLKSAFNSNPSSFL 161


>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 14/63 (22%), Positives = 32/63 (50%)

Query: 153 SLAAWYIHPLIDEFEYNLMVGLRLPFSFDTPLRYLFTYVIVLIAFNYTAHYVMVTDLIMQ 212
           +L  W    L D+  +   +G+  P +F   ++ +F  +  + A  Y +H+ ++  + ++
Sbjct: 115 NLLDWTQEKLDDKKLFPTEIGVEFPKNFRKVIQQIFRRLFRIYAHIYCSHFHVMVAMELE 174

Query: 213 SYL 215
           SYL
Sbjct: 175 SYL 177


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 28  FYEPVYRVAYLVGLSSLDRSVSYLVYSAVVKMMIGMFIGGELWFVCTESLSLDEIASSIN 87
           F +P+Y +A+++ L +L   + Y+ +  +VK+   +F G E     ++    DE ASS N
Sbjct: 330 FNKPIY-IAFIILLFTLQLLI-YIWFGMIVKVAYRVFSGEEATDSRSDDEGEDEEASSTN 387


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 26  TAFYEPVYRVAYLVGLSSLDRSVSYLVYSAV-VKMMIGMFIGGELWFVCTESLSLDEIAS 84
           T++Y  V RV  L   + L R ++ L Y    + +++ + +     F  T  +S+  I+ 
Sbjct: 262 TSYY--VQRVLGLNVGTPLQRKLTVLAYILFCIAIILAIIVMAAHSFHVTNEVSIYAISL 319

Query: 85  SINVI------VIQMTMMLKLKNLVQHKDIYRRL 112
            I++I      V+ +TM +  KN+ + + I R+L
Sbjct: 320 GISIIPESLIAVLSITMAMGQKNMSKRRVIVRKL 353


>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 80  DEIASSINVIVIQMTMMLKLKNLVQHKDIYRRLATSMESPYFDIRT--EKRRQIFEHWVK 137
           D  A+ +   V +   +LK++N +  K  YRR  T     YF + +  E  +  +   + 
Sbjct: 117 DMPATELTESVKRDIQLLKMRNALDPKRHYRRENTKSMPKYFQVGSIVEGPQDFYSSRIP 176

Query: 138 THER 141
           T ER
Sbjct: 177 TRER 180


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.140    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,243,705
Number of Sequences: 5004
Number of extensions: 51068
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 5
length of query: 276
length of database: 2,362,478
effective HSP length: 72
effective length of query: 204
effective length of database: 2,002,190
effective search space: 408446760
effective search space used: 408446760
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 53 (25.4 bits)