GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002473-TA|BGIBMGA002473-PA|undefined
         (276 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0772 - 23029703-23029715,23029835-23030463,23030637-230316...    29   4.1  
02_05_0607 - 30315982-30316215,30316688-30316831,30316902-303169...    28   7.1  
02_02_0410 - 9926476-9927288                                           28   7.1  
12_02_0502 - 19746100-19746185,19746745-19750474                       28   9.4  

>12_02_0772 -
           23029703-23029715,23029835-23030463,23030637-23031673,
           23031830-23032166
          Length = 671

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 10/118 (8%)

Query: 61  IGMFIGGELWFVCTESLSLDEIASSINVIVIQMTMMLKLKNLVQHKDIYR--------RL 112
           +G  +  E  +   E L L+     IN+I     +  ++ N  Q+ D            L
Sbjct: 346 LGKILSEEEQWAENERLFLESYEEEINLINEMENIKNEIDNAEQYNDFINTLDEVGLHNL 405

Query: 113 ATSMESPYFDIRTEKRRQIFEHWVKTHERTLKFLLFLGNGSLAAWYIHPLIDEFEYNL 170
             +ME+   D+ T KR++  E  VKT E+    L    NG L     H  I  +++N+
Sbjct: 406 DNAMEAMEVDLGTGKRKRYGEGTVKTKEKEKDQLGQQENGPLIEKNFH--ITIYQHNI 461


>02_05_0607 -
           30315982-30316215,30316688-30316831,30316902-30316989,
           30317829-30317934,30318398-30318552,30318630-30318699,
           30319940-30320106,30320827-30320894,30322764-30322867,
           30322937-30323107,30323113-30323238,30323496-30323663,
           30323725-30323908,30324139-30324534
          Length = 726

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 46  RSVSYLVYSAVVKMMIGMFIGGELWFVCTESLSLDEIASSINVI---VIQMTMMLKLKNL 102
           R V Y  YS V K  +G+  GGE   V   S S+    S ++V    +I   ++ K++  
Sbjct: 401 RMVDYSKYSRVSKWTLGLQGGGEQIAVIRASGSITRTRSPLSVPSSGIIAEQLIEKIRT- 459

Query: 103 VQHKDIYRRLATSMESP 119
           V+  + Y+ +   ++SP
Sbjct: 460 VRESEKYKAVILRIDSP 476


>02_02_0410 - 9926476-9927288
          Length = 270

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 104 QHKDIYRRLATSMESPYFDIRTEKRRQIFEHWVKTHERTLKFLLFLGNGSLA----AWYI 159
           QH  +  R+    E     +  +K R+    W+K+ E+ LK +   G G L     A  +
Sbjct: 150 QHVRLDPRVPALYEQAKNLVGIDKPREQIIGWIKSEEKQLKVVSIFGTGGLGKTTLAMEV 209

Query: 160 HPLIDE-FEYNLMVGL 174
           +  IDE F+   MV +
Sbjct: 210 YHKIDESFDCRAMVSV 225


>12_02_0502 - 19746100-19746185,19746745-19750474
          Length = 1271

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/55 (21%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 158 YIHPLIDEFEYNLMVGLRLPFSFDTPLRYLFTYVIVLIAFNYTAHYVMVTDLIMQ 212
           ++  + DEF + ++  L++PFS++  L+ ++++ I +  F +    +    L+ Q
Sbjct: 56  HVRAIFDEFRHLVLTNLKIPFSYN--LKEIWSFRIDIEGFEHWIEEIEYRGLVGQ 108


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.328    0.140    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,351,609
Number of Sequences: 37544
Number of extensions: 281740
Number of successful extensions: 648
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 4
length of query: 276
length of database: 14,793,348
effective HSP length: 81
effective length of query: 195
effective length of database: 11,752,284
effective search space: 2291695380
effective search space used: 2291695380
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)