GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002473-TA|BGIBMGA002473-PA|undefined
         (276 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_8395| Best HMM Match : Arm (HMM E-Value=2.3)                        29   3.1  
SB_15269| Best HMM Match : DUF1289 (HMM E-Value=3.5)                   29   5.5  
SB_14903| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_42029| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.6  

>SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1938

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 162  LIDEFEYNLMVGLRLPFSFDTPLRYLFTYVIVLIAFNYTAHYVMVTD 208
            +ID F+    + + LP + ++P +YLF Y I+   F+  + Y   +D
Sbjct: 1891 VIDVFQVIKRIRVNLPGAVESPTQYLFCYQIIQKYFDSFSDYANYSD 1937


>SB_8395| Best HMM Match : Arm (HMM E-Value=2.3)
          Length = 412

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 147 LFLGNGSLAAWYIHPLIDEFEYNLMVGLRLPFSFDTPLRYLFTYVIVLIAFN----YTAH 202
           + L  G L A Y+  +     Y L V  RL +  +   R L TY + L  +     Y A 
Sbjct: 11  MVLTRGILQAMYLLEVSCRLWYLLEVSCRLWYLLEVSCR-LCTYSMYLAGYGTYSRYLAG 69

Query: 203 YVMVTDLIMQSYLIPLICQ 221
           YV+   ++   YL+ + C+
Sbjct: 70  YVLTRGILQAMYLLEVSCR 88


>SB_15269| Best HMM Match : DUF1289 (HMM E-Value=3.5)
          Length = 195

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 109 YRRLATSMESPYFDIRTEKRRQIFEHWVKTHERTLK 144
           +RR  TS++  YF  + E RRQ  E  ++T+ R L+
Sbjct: 78  FRRARTSLDLDYFRTKPEIRRQRSEGSLETYYRKLR 113


>SB_14903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/45 (24%), Positives = 27/45 (60%)

Query: 20 SSGYYETAFYEPVYRVAYLVGLSSLDRSVSYLVYSAVVKMMIGMF 64
          S GYY+T  Y+  + + ++  L SL  S  +++++A+  +++  +
Sbjct: 7  SEGYYQTELYKRRWIMLFVFCLLSLTNSGQWIMFAAISDVIVPFY 51


>SB_42029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 40  GLSSLDRSVSYLVYSAVVKMMIGMFIGGELWFVCTESLSLDEIASSINVIVIQMTMML 97
           G SS DRSV  ++   ++ MM+ M +   +  V    + L  +   I V+V+   MM+
Sbjct: 56  GGSSGDRSVVTMMVIMMIVMMVAMIMVVVVMVVMMMMMMLAVVVMMIVVVVVMKVMMM 113


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 178  FSFDTPLRYLFTYVIVLIAFNYTAHYVMVTDLIMQSYLIPLICQYAVLA 226
            F+    LRYL+   I + A + + HY+ +   +   YL   +C   V A
Sbjct: 1735 FALSVSLRYLYLCAICIFALSVSLHYLYLCVFVFLPYL--CLCAIFVFA 1781


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.328    0.140    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,504,555
Number of Sequences: 59808
Number of extensions: 323111
Number of successful extensions: 1079
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1072
Number of HSP's gapped (non-prelim): 9
length of query: 276
length of database: 16,821,457
effective HSP length: 81
effective length of query: 195
effective length of database: 11,977,009
effective search space: 2335516755
effective search space used: 2335516755
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)