GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002473-TA|BGIBMGA002473-PA|undefined
         (276 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z78013-9|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    29   2.7  
U97550-3|AAK18981.2|  423|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U41023-1|AAA82340.1|  569|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF067219-10|AAC17031.1|  753|Caenorhabditis elegans Hypothetical...    28   6.3  
AF003133-2|AAB54136.1|  753|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AY152852-1|AAN62580.1|  770|Caenorhabditis elegans suppressor of...    28   8.4  
AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical...    28   8.4  
AL032636-3|CAA21604.1|  770|Caenorhabditis elegans Hypothetical ...    28   8.4  

>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
            F15B9.7 protein.
          Length = 2577

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 136  VKTHERTLKFLLFLGNGSLAAWYIHPLIDEFEYNLMVGLRLPFSFDTPLRYLFTY 190
            +KTH   + F+LF     L  +++H       Y  +    L F+   P  +LF Y
Sbjct: 2236 LKTHSVRIGFILFFAINILNLFFVHKTAINQAYCPVRNAMLSFTSSAPFAWLFLY 2290


>Z78013-9|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical protein
            F15B9.7 protein.
          Length = 2577

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 136  VKTHERTLKFLLFLGNGSLAAWYIHPLIDEFEYNLMVGLRLPFSFDTPLRYLFTY 190
            +KTH   + F+LF     L  +++H       Y  +    L F+   P  +LF Y
Sbjct: 2236 LKTHSVRIGFILFFAINILNLFFVHKTAINQAYCPVRNAMLSFTSSAPFAWLFLY 2290


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
            protein FMI-1 protein.
          Length = 2596

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 136  VKTHERTLKFLLFLGNGSLAAWYIHPLIDEFEYNLMVGLRLPFSFDTPLRYLFTY 190
            +KTH   + F+LF     L  +++H       Y  +    L F+   P  +LF Y
Sbjct: 2255 LKTHSVRIGFILFFAINILNLFFVHKTAINQAYCPVRNAMLSFTSSAPFAWLFLY 2309


>U97550-3|AAK18981.2|  423|Caenorhabditis elegans Hypothetical
           protein T20F7.6 protein.
          Length = 423

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 135 WVKTHERTLKFLLFLGNGSLAAWYIHPLIDEFEYNLMVGLRLPFSFDTPL 184
           ++ TH+R LKFL   G       Y+H    E       G+R+ F  DT L
Sbjct: 191 FILTHKRILKFLWLFGKHLAPLEYLHKSPKELGIGTWSGIRVVFP-DTQL 239


>U41023-1|AAA82340.1|  569|Caenorhabditis elegans Hypothetical
           protein F53H8.3 protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 191 VIVLIAFNYT---AHYVMVTDLIMQSYLIPLICQYAVLADCFENILIDCSNDYGDH 243
           +IV+IA  +T   A +   TD+ + + L P+I +++ LA      L  C++ +  H
Sbjct: 328 IIVMIAQQFTGCTAVFAFSTDMFLNAGLTPVIARFSTLAIGIVYFLFACTSPFLIH 383


>AF067219-10|AAC17031.1|  753|Caenorhabditis elegans Hypothetical
           protein R12E2.10 protein.
          Length = 753

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 175 RLPFSFDTPLRYLFTYVIVLIAF 197
           R PFS +TP++Y+F + +V   F
Sbjct: 640 RRPFSIETPMQYIFVHRLVAFFF 662


>AF003133-2|AAB54136.1|  753|Caenorhabditis elegans Hypothetical
           protein T21E3.1 protein.
          Length = 753

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 175 RLPFSFDTPLRYLFTYVIVLIAF 197
           R PFS +TP++Y+F + +V   F
Sbjct: 640 RRPFSIETPMQYIFVHRLVAFFF 662


>Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical
           protein F31F6.5 protein.
          Length = 913

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/69 (21%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 50  YLVYSAVVKMMIGMFIGGELWFVCTESLSLDEIASSINVIVIQMTMMLKLKNLVQHKDIY 109
           ++++ ++V + IG+F    LW V  +++S+  I  SI    + ++  +    +  H D  
Sbjct: 776 FVIFVSIVSINIGVFGYMTLWGVNLDAVSMISIIMSIG-FAVDLSAHIIYAFVTSHGDTK 834

Query: 110 RRLATSMES 118
           +R+  ++E+
Sbjct: 835 QRVIGALET 843


>AY152852-1|AAN62580.1|  770|Caenorhabditis elegans suppressor of
           presenilin 5 protein.
          Length = 770

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 121 FDIRTEKRRQIF-EHWVKTHERTLKFLLFLGNGSLAAWYIHPLIDEFEYNLMVGLRLPFS 179
           FD  T+     F E W   H+  ++  L L N +LA W  +PL +    ++   +  PF+
Sbjct: 39  FDRPTDHELAFFPELW--EHKTAVEVFLLLRNSTLATWQYNPLKECTALDVRNNVFPPFN 96

Query: 180 FDTPL 184
            D  L
Sbjct: 97  SDLDL 101


>AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical
           protein Y38F1A.9 protein.
          Length = 108

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 70  WFVCTESLSLDEIASSINVIVIQMTMMLKLKNLVQH-KDIYRRLATS 115
           WF+  + L+ D   S I  +V + T+ L +KN  Q  + +Y+  AT+
Sbjct: 37  WFLKDKELTGDRYVSKIKKMVGKFTVTLHIKNPTQEDQGVYKVTATN 83


>AL032636-3|CAA21604.1|  770|Caenorhabditis elegans Hypothetical
           protein Y40B1B.6 protein.
          Length = 770

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 121 FDIRTEKRRQIF-EHWVKTHERTLKFLLFLGNGSLAAWYIHPLIDEFEYNLMVGLRLPFS 179
           FD  T+     F E W   H+  ++  L L N +LA W  +PL +    ++   +  PF+
Sbjct: 39  FDRPTDHELAFFPELW--EHKTAVEVFLLLRNSTLATWQYNPLKECTALDVRNNVFPPFN 96

Query: 180 FDTPL 184
            D  L
Sbjct: 97  SDLDL 101


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.328    0.140    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,494,775
Number of Sequences: 27539
Number of extensions: 263461
Number of successful extensions: 816
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 810
Number of HSP's gapped (non-prelim): 11
length of query: 276
length of database: 12,573,161
effective HSP length: 80
effective length of query: 196
effective length of database: 10,370,041
effective search space: 2032528036
effective search space used: 2032528036
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)