Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002472-TA|BGIBMGA002472-PA|undefined
(218 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0441 + 17781533-17781775,17782007-17782114,17782386-177824... 33 0.24
02_01_0476 - 3429957-3430067,3430131-3430394,3430860-3430994 31 0.73
09_06_0243 - 21813223-21813456,21814266-21814367,21814501-218147... 30 1.7
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 2.9
08_02_0086 - 12133709-12133781,12133860-12134011,12134501-121345... 29 2.9
09_01_0161 + 2401945-2402218,2402469-2402563,2402936-2403070,240... 28 6.8
12_01_0197 + 1456296-1456668,1456930-1458746 27 8.9
06_03_0437 - 20765682-20765951,20766040-20766294,20766374-207665... 27 8.9
04_01_0515 + 6740112-6740757,6755297-6755570,6755595-6755871 27 8.9
03_05_0527 + 25220375-25221425,25221513-25222182,25222347-252224... 27 8.9
>11_04_0441 +
17781533-17781775,17782007-17782114,17782386-17782471,
17782546-17782807,17782921-17783120,17783770-17784012,
17784118-17784394,17784625-17784759,17784880-17784960,
17785311-17785406,17785661-17785756,17785834-17785890,
17785967-17786035,17786154-17786240,17786534-17786635,
17786730-17786819,17786900-17786980,17787573-17787653,
17787761-17787856,17787937-17787993,17788093-17788137,
17788218-17788346
Length = 906
Score = 32.7 bits (71), Expect = 0.24
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 74 IDHKDMYKRFATSMESPHF----DTSTDKRKKFLYPLVDELDYNLIVGVHLPFEY 124
+ H+D + +ES F D S + K+ LVDE + ++ G+HLP Y
Sbjct: 770 LQHRDRLESLICELESEGFFRVDDDSIEWEKEHFSELVDEFNEHIFAGIHLPKYY 824
>02_01_0476 - 3429957-3430067,3430131-3430394,3430860-3430994
Length = 169
Score = 31.1 bits (67), Expect = 0.73
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 34 LLVCGEVWYSISETSS--LDEIAAGINATLIQFIAIYRYKNMIDHKDMYKRFATSM 87
L+ E + +T S DEI A I+A L+ I Y+ M DH ++R TSM
Sbjct: 39 LVAAAEQLSKLEKTPSDRFDEIEAAIHANLVNDIEAYKSSLMADH-GFFERMLTSM 93
>09_06_0243 -
21813223-21813456,21814266-21814367,21814501-21814701,
21815591-21815716,21815791-21816072,21816218-21816388,
21816838-21816999,21817404-21817467,21818136-21818503
Length = 569
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 38 GEVWYSISETSSLDEIAAGINATLIQFIAIYRYKNMIDHKDMYKRFATSME 88
GEV + + D+ G + F +YRY +DHK Y R T ++
Sbjct: 92 GEVGMYVCGVTPYDDSHIGHARAYVAFDVLYRYLRYLDHKVRYVRNFTDID 142
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 75 DHKDMYKRFATSMESPHF----DTSTDKRKKFLYPLVDELDYNLIVGVHLPFEY 124
+H+D + +E+ F D S + + LVDE + ++ G+HLP Y
Sbjct: 889 EHRDRLESLICELEAEGFFSVDDDSIEWENEHFSELVDEFNEHVFAGIHLPKYY 942
>08_02_0086 -
12133709-12133781,12133860-12134011,12134501-12134573,
12134665-12134810,12135029-12135108,12136071-12136245
Length = 232
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 151 TDLIMQAHLLHLLCQFNVLADCFENMLNDCVKGFEGIPLLRLLKNKQ 197
T L + LL LC++ + DC E++ + ++ + P+ L+N Q
Sbjct: 108 TTLTNRKELLGALCKYVMSIDCAESLQKEWIRSMKPYPISLSLRNLQ 154
>09_01_0161 +
2401945-2402218,2402469-2402563,2402936-2403070,
2403176-2403865
Length = 397
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 94 TSTDKRKKFLYPLVDELDYNLIVGVHLPFE 123
T+ +K++KFL L DEL LI G + FE
Sbjct: 297 TNAEKQEKFLAGLDDELTNQLISGDYADFE 326
>12_01_0197 + 1456296-1456668,1456930-1458746
Length = 729
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 3 YTKEYAENRLSSSDRTIIYLVYSISVKLMILLLVCGEVWYSISETSSL 50
+ +EY N L SSD T Y+I+ I +WYS S ++
Sbjct: 38 FVEEYETNILQSSDGTFSCGFYNITKAYNITSAFTFSIWYSNSADKAI 85
>06_03_0437 - 20765682-20765951,20766040-20766294,20766374-20766545,
20766964-20767097,20767205-20767288,20767369-20767659,
20767867-20768214,20768321-20768496,20768579-20768695,
20768780-20768936,20769110-20769225,20769323-20769483,
20769567-20769883,20769969-20770250,20770347-20770648,
20771977-20772067,20773203-20773256,20773723-20773812
Length = 1138
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 104 YPLVDELDYNLIVGVHLPFEYKTPSRYPLAYITVVIAFIYVSYFVMVTDLIMQAH 158
Y V Y LIV + F++ T +++ + +F+Y +Y+ M+T I H
Sbjct: 971 YVFVQTAYYTLIVYAMMSFQW-TAAKFFWFFFVSYFSFLYFTYYGMMTVAISPNH 1024
>04_01_0515 + 6740112-6740757,6755297-6755570,6755595-6755871
Length = 398
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 94 TSTDKRKKFLYPLVDELDYNLIVGVHLPFE 123
T +K++KFL L DEL LI G + FE
Sbjct: 144 TDAEKQEKFLAGLDDELTNQLISGDYADFE 173
>03_05_0527 +
25220375-25221425,25221513-25222182,25222347-25222440,
25222688-25222870
Length = 665
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 94 TSTDKRKKFLYPLVDELDYNLIVGVHLPFE 123
T +K++KFL L DEL LI G + FE
Sbjct: 217 TDAEKQEKFLAGLDDELTNQLISGDYADFE 246
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.326 0.140 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,493,460
Number of Sequences: 37544
Number of extensions: 205124
Number of successful extensions: 588
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 10
length of query: 218
length of database: 14,793,348
effective HSP length: 79
effective length of query: 139
effective length of database: 11,827,372
effective search space: 1644004708
effective search space used: 1644004708
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)
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