GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002472-TA|BGIBMGA002472-PA|undefined
         (218 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1815| Best HMM Match : Lig_chan (HMM E-Value=1.4)                   28   5.2  
SB_58244| Best HMM Match : MpPF26 (HMM E-Value=9.9)                    27   9.1  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              27   9.1  

>SB_1815| Best HMM Match : Lig_chan (HMM E-Value=1.4)
          Length = 698

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/28 (39%), Positives = 21/28 (75%)

Query: 11  RLSSSDRTIIYLVYSISVKLMILLLVCG 38
           RLS SDR ++ ++ S S +L++L+++ G
Sbjct: 482 RLSDSDRLVLLVIISDSGRLVLLVIISG 509


>SB_58244| Best HMM Match : MpPF26 (HMM E-Value=9.9)
          Length = 125

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/60 (20%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 109 ELDYNLIVGVHLPFEYKTPSRYPLAYITVVIAFIYVSYFVMVTDLIMQAHLLHLLCQFNV 168
           EL Y   V ++LP  +   + + +   T++I F+ ++  ++++ +I+   L    C +++
Sbjct: 19  ELVYKKGVAINLPSPFII-TMFIIITTTIIITFLVITIIIIISIIIINTSLSTYRCDYDI 77


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 39  EVWYSISETSSLDEIAAGINATLIQFI-AIYRYKNMIDHKDMYKRFATSMESPHFDTSTD 97
           E+  +++  S+L+E A   N  +      I R KN +   +  +  AT  ES   DT+ D
Sbjct: 660 ELQDALNRASALEEDAKNHNQVVDNLQDEITRLKNKLSEAER-QAAATQRESVEKDTTID 718

Query: 98  KRKKFLYPLVDELD 111
             KK +  L +E+D
Sbjct: 719 SLKKEIDDLNNEID 732


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.140    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,753,209
Number of Sequences: 59808
Number of extensions: 257934
Number of successful extensions: 759
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 757
Number of HSP's gapped (non-prelim): 4
length of query: 218
length of database: 16,821,457
effective HSP length: 79
effective length of query: 139
effective length of database: 12,096,625
effective search space: 1681430875
effective search space used: 1681430875
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)