GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002472-TA|BGIBMGA002472-PA|undefined
         (218 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC039256-1|AAH39256.1|  529|Homo sapiens APRIN protein protein.        31   2.4  
BC040501-1|AAH40501.2| 1700|Homo sapiens leucine rich repeat con...    30   5.4  
AY386262-1|AAR28083.1|  820|Homo sapiens c114 SLIT-like testicul...    30   5.4  
BC069240-1|AAH69240.1|  494|Homo sapiens TMEM87A protein protein.      29   9.5  
AK075403-1|BAC11598.1|  564|Homo sapiens protein ( Homo sapiens ...    29   9.5  
AK074870-1|BAC11256.1|  555|Homo sapiens protein ( Homo sapiens ...    29   9.5  
AF132733-1|AAF66444.1|  555|Homo sapiens unknown protein.              29   9.5  

>BC039256-1|AAH39256.1|  529|Homo sapiens APRIN protein protein.
          Length = 529

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 63  QFIAIYRYKNMIDHKDMYKRFATSMESPHFDTSTDKRKKFLYPLVDELDYNLIVGVHLPF 122
           + + IY Y+N ID + + +R       PH +  T +R K LY L   LD N +  V    
Sbjct: 439 KLLHIY-YQNSIDDRLLVERIFAQYMVPH-NLETTERMKCLYYLYATLDLNAVKYVS--- 493

Query: 123 EYKTPSRYPLAYI 135
             K  S +PL YI
Sbjct: 494 NIKFCSFHPLQYI 506


>BC040501-1|AAH40501.2| 1700|Homo sapiens leucine rich repeat
            containing 37A protein.
          Length = 1700

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 101  KFLYPLVDELDYNLIVGVHLPFEYKTPSRYPLAYITVVIAFIYVSYFVMVT----DLIMQ 156
            +FL+ L+  L++N +  V  P+ +K P+   L   T ++    +   +M+T     LI+ 
Sbjct: 964  QFLHKLI--LNHNPLTTVEDPYLFKLPALKYLDMGTTLVPLTTLKNILMMTVELEKLILP 1021

Query: 157  AHLLHLLCQF 166
            +H+   LCQF
Sbjct: 1022 SHMACCLCQF 1031


>AY386262-1|AAR28083.1|  820|Homo sapiens c114 SLIT-like testicular
           protein protein.
          Length = 820

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 101 KFLYPLVDELDYNLIVGVHLPFEYKTPSRYPLAYITVVIAFIYVSYFVMVT----DLIMQ 156
           +FL+ L+  L++N +  V  P+ +K P+   L   T ++    +   +M+T     LI+ 
Sbjct: 84  QFLHKLI--LNHNPLTTVEDPYLFKLPALKYLDMGTTLVPLTTLKNILMMTVELEKLILP 141

Query: 157 AHLLHLLCQF 166
           +H+   LCQF
Sbjct: 142 SHMACCLCQF 151


>BC069240-1|AAH69240.1|  494|Homo sapiens TMEM87A protein protein.
          Length = 494

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 112 YNLIVGVHLPFEYKTPSRYPLAYITVVIAFIYVSYFVM 149
           + + V V  P+EY T   YPL    +V+  +YV + V+
Sbjct: 145 FTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVL 182


>AK075403-1|BAC11598.1|  564|Homo sapiens protein ( Homo sapiens
           cDNA PSEC0094 fis, clone NT2RP2001499, weakly similar to
           PROTEIN PTM1 PRECURSOR. ).
          Length = 564

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 112 YNLIVGVHLPFEYKTPSRYPLAYITVVIAFIYVSYFVM 149
           + + V V  P+EY T   YPL    +V+  +YV + V+
Sbjct: 215 FTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVL 252


>AK074870-1|BAC11256.1|  555|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90389 fis, clone NT2RP2005463, weakly similar to
           PROTEIN PTM1 PRECURSOR. ).
          Length = 555

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 112 YNLIVGVHLPFEYKTPSRYPLAYITVVIAFIYVSYFVM 149
           + + V V  P+EY T   YPL    +V+  +YV + V+
Sbjct: 206 FTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVL 243


>AF132733-1|AAF66444.1|  555|Homo sapiens unknown protein.
          Length = 555

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 112 YNLIVGVHLPFEYKTPSRYPLAYITVVIAFIYVSYFVM 149
           + + V V  P+EY T   YPL    +V+  +YV + V+
Sbjct: 206 FTMTVEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVL 243


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.326    0.140    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,740,641
Number of Sequences: 224733
Number of extensions: 1150820
Number of successful extensions: 2258
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2254
Number of HSP's gapped (non-prelim): 7
length of query: 218
length of database: 73,234,838
effective HSP length: 87
effective length of query: 131
effective length of database: 53,683,067
effective search space: 7032481777
effective search space used: 7032481777
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 63 (29.5 bits)