GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002472-TA|BGIBMGA002472-PA|undefined
         (218 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92830-13|CAE17777.1|  191|Caenorhabditis elegans Hypothetical p...    33   0.16 
Z70035-3|CAA93863.1|  435|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z74043-11|CAA98549.3|  303|Caenorhabditis elegans Hypothetical p...    28   5.9  
AF036700-4|AAV34787.1|  437|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF036700-3|AAB88366.2|  479|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z81056-8|CAB02907.2|  307|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF016420-7|AAB65303.1|  428|Caenorhabditis elegans Serpentine re...    27   7.9  

>Z92830-13|CAE17777.1|  191|Caenorhabditis elegans Hypothetical
           protein F11A5.15 protein.
          Length = 191

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 1   MDYTKEYAENRLSSSDRTIIYLVYSISVKLMILLLVCGEVWYS 43
           M+  K + +NR SSS R+I+ LV+ + V L++  ++ G +W S
Sbjct: 87  MERLKTWDKNRASSSTRSILCLVWLVRVMLLV-AVITGIIWTS 128


>Z70035-3|CAA93863.1|  435|Caenorhabditis elegans Hypothetical
           protein R09D1.3 protein.
          Length = 435

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 57  INATLIQFIAIYRYKNMIDHKDMYKRFATSMESPHFDTSTDKRKKFLYPLVDELDYNLIV 116
           + +TLI  I  + + +MID  D++ ++ TS +  ++ T   + ++     VDELD  +I+
Sbjct: 163 MKSTLITSIIAFIHSHMIDGVDLHWKWPTSRDKSNYATLIREIRE----KVDELDAKIII 218

Query: 117 GVHLP 121
            + +P
Sbjct: 219 SITIP 223


>Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical
           protein Y41E3.15 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 113 NLIVGVHLPFEYKTPSRYPLAYITVVIAFIYVSYFVMVT 151
           N IV + LP +Y       LAY +++++ IY  Y+V  T
Sbjct: 131 NRIVNITLP-QYSDLIEAKLAYFSIILSIIYGFYYVFFT 168


>Z74043-11|CAA98549.3|  303|Caenorhabditis elegans Hypothetical
           protein T19B10.10 protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 105 PLVDELDYNLIVGVHLPFEYKTPSRYPLAYITVVIAF--IYVSYFVMVTDLIMQAHLLHL 162
           PL+  +  + ++   LP  Y+     P  Y+ + ++F  IY SY  +++ L   +  + +
Sbjct: 95  PLLLSMGIDRLIACQLPVFYRQLCSRPSFYLCIQLSFPIIYTSYITVISFLQRDSETM-V 153

Query: 163 LCQ 165
           +CQ
Sbjct: 154 ICQ 156


>AF036700-4|AAV34787.1|  437|Caenorhabditis elegans Hypothetical
           protein M04G7.3b protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 20  IYLVYSISVKLMILLLVCGEVWYSISE-TSSLDEIAAGI---NATLIQFIAIYRYKNMID 75
           ++L Y I    M LL     + Y   + T +L  IA+ +   +  L+ +I   R+  M+ 
Sbjct: 82  VFLFYGIEA--MSLLFFRTNIMYDKQDFTYNLHGIASSLTTASTALVIYITFLRF--MVV 137

Query: 76  HKDMYKRFATSMESPHFDTSTDKRKKFLYPLVDELDYNLI 115
            + M  RFATSM S H  T +   +K    L D +  N I
Sbjct: 138 VQPM--RFATSMNSNHRRTGSKAVRKGSAQLEDSVTNNTI 175


>AF036700-3|AAB88366.2|  479|Caenorhabditis elegans Hypothetical
           protein M04G7.3a protein.
          Length = 479

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 20  IYLVYSISVKLMILLLVCGEVWYSISE-TSSLDEIAAGI---NATLIQFIAIYRYKNMID 75
           ++L Y I    M LL     + Y   + T +L  IA+ +   +  L+ +I   R+  M+ 
Sbjct: 124 VFLFYGIEA--MSLLFFRTNIMYDKQDFTYNLHGIASSLTTASTALVIYITFLRF--MVV 179

Query: 76  HKDMYKRFATSMESPHFDTSTDKRKKFLYPLVDELDYNLI 115
            + M  RFATSM S H  T +   +K    L D +  N I
Sbjct: 180 VQPM--RFATSMNSNHRRTGSKAVRKGSAQLEDSVTNNTI 217


>Z81056-8|CAB02907.2|  307|Caenorhabditis elegans Hypothetical
           protein F09F3.12 protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 113 NLIVGVHLPFEYKTPSRYPLAYITVVIAFIYVSYFVMV 150
           N    ++ P +    +RYP+  I++ +AFI    F ++
Sbjct: 107 NRFSSLYFPIQIMKANRYPITTISIGVAFIIAVVFTVI 144


>AF016420-7|AAB65303.1|  428|Caenorhabditis elegans Serpentine
           receptor, class r protein8 protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 112 YNLIVGVHLP-FEYKTPSRYPLAYITVVIAFIYVSYFVMVTDLIMQAHL 159
           + L  GV+L  F Y  P  Y +     + + I+ + FVM   +I+Q HL
Sbjct: 300 WGLANGVYLTSFVYDVPLLYAIIVGFNLASIIFYNVFVMFPAIILQEHL 348


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.140    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,154,605
Number of Sequences: 27539
Number of extensions: 209896
Number of successful extensions: 750
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 9
length of query: 218
length of database: 12,573,161
effective HSP length: 79
effective length of query: 139
effective length of database: 10,397,580
effective search space: 1445263620
effective search space used: 1445263620
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)