GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002472-TA|BGIBMGA002472-PA|undefined
         (218 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   5.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.0  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/15 (46%), Positives = 13/15 (86%)

Query: 78  DMYKRFATSMESPHF 92
           +M+K+FA+  +SP+F
Sbjct: 461 NMFKKFASLKKSPYF 475


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/15 (46%), Positives = 13/15 (86%)

Query: 78  DMYKRFATSMESPHF 92
           +M+K+FA+  +SP+F
Sbjct: 461 NMFKKFASLKKSPYF 475


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 95  STDKRKKFLYPLVDELDYNL 114
           S +K KK+    ++EL++NL
Sbjct: 41  SNNKSKKYFEQTLNELNFNL 60


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/31 (35%), Positives = 12/31 (38%)

Query: 83   FATSMESPHFDTSTDKRKKFLYPLVDELDYN 113
            F T  E  HF +  D       PL   LD N
Sbjct: 982  FVTPFEHRHFISGIDSNLHVYAPLKISLDVN 1012


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 65  IAIYRYKNMIDHKDMYK 81
           +A+Y  KN +D  D +K
Sbjct: 181 LALYNNKNFVDLSDYWK 197


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.140    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,839
Number of Sequences: 429
Number of extensions: 2658
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 218
length of database: 140,377
effective HSP length: 55
effective length of query: 163
effective length of database: 116,782
effective search space: 19035466
effective search space used: 19035466
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 42 (21.0 bits)