GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002471-TA|BGIBMGA002471-PA|IPR011701|Major facilitator
superfamily MFS_1
         (594 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   1.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   1.9  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    24   2.6  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    23   7.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 314 RKMAENERAQESFDEEQALDKIKKDNSSYGTVGQSESAEAGNTISIS 360
           RK+ E ERAQ  F    +   + K   S G  G+    + GN I  S
Sbjct: 602 RKLLELERAQHEFKNGDSSSLLDKMRDSSG-AGRITCEKCGNKIDTS 647


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 518 HATGMWDSSGGGCGQERGIGTDVAVVSSCVFVAQMLVS 555
           H+TG W    GG  Q     TD + ++  +  +  L+S
Sbjct: 193 HSTGSWLDMSGGMHQMANYSTDYSSLTHSLAASNHLLS 230


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 483 LCVLRDPASVLLFSWTAGVMYSTLFTMPYLLVAHYHATGMWDSS 526
           +C     + + L +W      + LFT P L++A Y     +D S
Sbjct: 181 ICTKTRASLICLLAW----FIAALFTSPMLVIAEYKQLDYFDGS 220


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 480 MLMLCVLRDPASVLLFSWTAGVMYSTLFTMPYLLVAHYHATG 521
           +L  C+    +S  L++  AG  ++  FT+ Y+L A ++  G
Sbjct: 231 ILAKCITSSLSS--LYTCIAGYEFNANFTISYILFALFNTFG 270


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,902
Number of Sequences: 317
Number of extensions: 5180
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 594
length of database: 114,650
effective HSP length: 61
effective length of query: 533
effective length of database: 95,313
effective search space: 50801829
effective search space used: 50801829
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)