Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002471-TA|BGIBMGA002471-PA|IPR011701|Major facilitator
superfamily MFS_1
(594 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 63 1e-10
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 34 0.048
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 30 0.79
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 29 2.4
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 28 3.2
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 28 4.2
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 28 4.2
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 5.6
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 7.4
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 27 7.4
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 27 7.4
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 27 7.4
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 7.4
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 27 7.4
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 7.4
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 27 9.7
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 62.9 bits (146), Expect = 1e-10
Identities = 25/84 (29%), Positives = 50/84 (59%)
Query: 62 SEYSDIFRRKSRVELMRISAAVMGIEFSYAGETAFVSPTLLQIGVPHEEMTLVWALSPLI 121
S + + +S + L+ ++ +++G++ +++ E + +P L +G+ E +++W PL
Sbjct: 22 SPFKESIPSRSSLYLIALTVSLLGVQLTWSVELGYGTPYLFSLGLRKEWTSIIWIAGPLT 81
Query: 122 GFFMTPLLGSLSDRCRSKFGRRRP 145
G + P+ G LSDR S+ GRRRP
Sbjct: 82 GILIQPIAGILSDRVNSRIGRRRP 105
Score = 31.5 bits (68), Expect = 0.34
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 376 KSIVVMPGSLRIVCLTNLFCWMAHVCYSLYFTDFVGESVFGGNPAAPVGSEDRINYEAGV 435
+SI +P +L+ +C F + + Y T +VG AP G E+ +++
Sbjct: 264 QSITALPFTLKRICFVQFFAYFGWFPFLFYITTYVGILYL---RHAPKGHEE--DWDMAT 318
Query: 436 RFGCWGMAMYSLSCACYSTVIERLIK 461
R G + + ++++ +T + L++
Sbjct: 319 RQGSFALLLFAIISLAANTALPLLLE 344
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 34.3 bits (75), Expect = 0.048
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 441 GMAMYSLSCACYSTVIERLIKKLGAKKVYVGGLCTYSCGMLMLCVLRDPASVLLFSWTAG 500
G +M+ L A + L LG K VY+G L Y C + + R+ A +++ G
Sbjct: 122 GQSMFVLGVALGPLFLGPLSDLLGRKLVYIGSLIIYVCFCISCALARNYAQLVISMLIMG 181
Query: 501 VMYST 505
V+ ST
Sbjct: 182 VVGST 186
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 30.3 bits (65), Expect = 0.79
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 300 KEIPLDKLNEQDEFRKMAENERAQESFDEEQALDKIKKDNSS 341
K P+ EQ+E K E E S+ EE+ ++++ KDN+S
Sbjct: 174 KRSPVSDYEEQNESEKSEEEEGYSPSYAEEK-VEQVSKDNAS 214
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 474 CTYSCGMLMLCVLRDPASVLLFSWTAGVMYSTLFT-MPYLLVA 515
C Y ++C+L +S+L F W + + + LF+ P LL++
Sbjct: 370 CPYGKNKTLICLLNFQSSLLSFEWISIISRALLFSPRPSLLIS 412
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 300 KEIPLDKLNEQDEFRKMAENERAQESFDEEQALDKIK 336
K I + +N++++ + R Q+SF+E +L+KIK
Sbjct: 1426 KNIVAEGINQREQLTYEVLDYRLQDSFEESPSLEKIK 1462
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 318 ENERAQESFDEEQALDKIKKDNSSYGTVGQSESAEAGNTISISDSPHGAEPLS 370
+N+ + S D E D+SS + +SES+ G+ S S S +E S
Sbjct: 125 DNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSS 177
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 318 ENERAQESFDEEQALDKIKKDNSSYGTVGQSESAEAGNTISISDSPHGAEPLS 370
+N+ + S D E D+SS + +SES+ G+ S S S +E S
Sbjct: 179 DNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSS 231
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 90 YAGETAFVSPTLLQIGVPHEEMTLVWALSPLIGFFMTPLLGSLSD 134
YA VS +Q + H +TL+WA+SP+ + SL D
Sbjct: 767 YADLPNSVSRRSVQTVLYHSLLTLIWAISPITPLLAQEIWQSLPD 811
>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 253
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 329 EQALDKIKKDNSSYGTVGQSESAEAGNTISISDSPHGAEPL 369
E+AL K++ D++ + S+ +T SI DSP G E L
Sbjct: 38 EEALSKLRHDSARLMILKTSDPTLNMSTYSIEDSPMGFECL 78
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 27.1 bits (57), Expect = 7.4
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 400 VCYSLYFTDFVGESVFGGNPAAPVGSEDRINYEAGVRFGCWGMAMYSLSCACYSTVIERL 459
V S+ F + G+SVF AP S + A G +Y+L + + L
Sbjct: 47 VISSMTFLNQYGDSVF-----APSISNIAEQFHASRTLVTLGATLYTLGILFGNLIFAPL 101
Query: 460 IKKLGAKKVYVGGLCTYSCGMLMLCVLRDPASVLLFSWTAGVMYS 504
++ G + +Y+ G ++ + + + + A L+F + +G+ S
Sbjct: 102 SEQFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRFFSGLFGS 146
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 27.1 bits (57), Expect = 7.4
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 446 SLSCACYSTVIERLIKKLGAKKVYVGGLCTYSCGMLMLCVLRDPASVLLFSWTAGVMYST 505
SL+ Y + I+ IK L KK GM+ +D S + W + +ST
Sbjct: 54 SLTSENYDSFIKE-IKTLSLKKFIPEITAAIVEGMMKCKATKDILSSVKIVWALNLRFST 112
Query: 506 LFTMPYL 512
FT P L
Sbjct: 113 AFTGPML 119
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 436 RFGCWGMAMYSLSCACYSTVIERLIKKLGAK 466
R GC +A S S ACY + R IK L K
Sbjct: 106 RVGCMELAFISFSAACYFNI--RSIKSLSLK 134
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 304 LDKLNEQDEFRKMAENERAQESFDEEQALDKIKKDNSSYGTVGQSESAEAGNTISISDSP 363
+++LN +E + AE E ++ +++ +K KD + E E + +SDS
Sbjct: 172 IEELNSDEEDAEQAEEEILEKPVPKDEVAEKHSKDKL------KKEEKEKKTAVDVSDSV 225
Query: 364 HG 365
+G
Sbjct: 226 NG 227
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 7.4
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 440 WGMAMYSLSCACYSTVIERLIKKLGAKKVYVGGLCTYSCGMLM 482
W Y +SC + + + G KK + C + G +
Sbjct: 128 WTATAYMISCTAFQPLFGKFCDIYGRKKTLLAAYCVFGIGCFL 170
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 27.1 bits (57), Expect = 7.4
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 400 VCYSLYFTDFVGESVFGGNPAAPVGSEDRINYEAGVRFGCWGMAMYSLSCACYSTVIERL 459
V S+ F + G+SVF AP S + A G +Y+L + + L
Sbjct: 47 VISSMTFLNQYGDSVF-----APSISNIAEQFHASRTLVTLGATLYTLGILFGNLIFAPL 101
Query: 460 IKKLGAKKVYVGGLCTYSCGMLMLCVLRDPASVLLFSWTAGVMYS 504
++ G + +Y+ G ++ + + + + A L+F + +G+ S
Sbjct: 102 SEQFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRFFSGLFGS 146
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 27.1 bits (57), Expect = 7.4
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 400 VCYSLYFTDFVGESVFGGNPAAPVGSEDRINYEAGVRFGCWGMAMYSLSCACYSTVIERL 459
V S+ F + G+SVF AP S + A G +Y+L + + L
Sbjct: 47 VISSMTFLNQYGDSVF-----APSISNIAEQFHASRTLVTLGATLYTLGILFGNLIFAPL 101
Query: 460 IKKLGAKKVYVGGLCTYSCGMLMLCVLRDPASVLLFSWTAGVMYS 504
++ G + +Y+ G ++ + + + + A L+F + +G+ S
Sbjct: 102 SEQFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRFFSGLFGS 146
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 30 KEQHPRGVKGILAETLFGIPN------SEEPSGRVWQDSEYSDI 67
+++ P+ + I + +F PN S+E S + DSEYSDI
Sbjct: 540 RKRRPKSKRRITGKVVFDSPNVASGVESDEGSEEISLDSEYSDI 583
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.136 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,336
Number of Sequences: 5004
Number of extensions: 103225
Number of successful extensions: 295
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 24
length of query: 594
length of database: 2,362,478
effective HSP length: 77
effective length of query: 517
effective length of database: 1,977,170
effective search space: 1022196890
effective search space used: 1022196890
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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