GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002471-TA|BGIBMGA002471-PA|IPR011701|Major facilitator
superfamily MFS_1
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022)                  38   0.017
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.053
SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)                    33   0.65 
SB_42261| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.6  
SB_27457| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-17)                 31   2.6  
SB_4894| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   2.6  
SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)         30   6.1  
SB_8283| Best HMM Match : Aerolysin (HMM E-Value=2.5e-05)              30   6.1  
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   6.1  
SB_27650| Best HMM Match : Binary_toxA (HMM E-Value=8.2)               30   6.1  
SB_54977| Best HMM Match : MFS_1 (HMM E-Value=0.006)                   29   8.0  
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)                        29   8.0  

>SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022)
          Length = 720

 Score = 38.3 bits (85), Expect = 0.017
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 96  FVSPTLLQIGVPHEEMTLVWALSPLIGFFMTPLLGSLSDRCRSK 139
           F++  + QIG+ +++M ++  + PLI     PL G L DRC SK
Sbjct: 64  FLNGYIRQIGISNDQMQILSGVRPLIHLVFAPLWGVLGDRCISK 107


>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 36.7 bits (81), Expect = 0.053
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 4/110 (3%)

Query: 266  ETKLGEILGGHVRAVFSLITAIFVACVTATVTSFKEIPLDKLNEQDEFRKMAENERAQES 325
            ET   E    +   V+++ TA+ +  V A +  F  + LD+    +E ++      +   
Sbjct: 979  ETYKKESKRNYDAVVYTVGTALILVIVLAFLRGFYRLKLDRKRIHEEKKRKISYPVSNPR 1038

Query: 326  F-DEEQALDKIKKDNSSYGTVGQSESAEAGNTISISDSPHGAEPLS-LGH 373
            F D E  ++KIK        V    +AE G+ +S SD   G+ P S LGH
Sbjct: 1039 FQDPESPVEKIKTPGQGRKLV--VVNAEKGSEMSRSDEDEGSSPDSALGH 1086


>SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)
          Length = 1418

 Score = 33.1 bits (72), Expect = 0.65
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 298 SFKEIPLDKLNEQDEFRKMAENERAQESFDEEQALDKIKKDNSSYGTVGQSESAEAGNTI 357
           + + +P  K  +  +++   E E +++ FD +  L K+ +D      V QSES E GN  
Sbjct: 921 TLEALPFIKNTKASKYKANQEPEESKDDFDLDLMLLKVSEDKKKQKLVHQSESLE-GNIT 979

Query: 358 SISDSPHGAE 367
           +++     AE
Sbjct: 980 TVAPLEDKAE 989


>SB_42261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 480

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 498 TAGVMYSTLFTMPYLLVAHYHATGMWDSSGGGCGQERG 535
           TAGV++  L  + +++ A  HA G+  S GGG G + G
Sbjct: 438 TAGVVFGFLAMLVFIIDAVVHAKGVSFSGGGGGGGKAG 475


>SB_27457| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-17)
          Length = 352

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 347 QSESAEAGNTISISDSPHGAEPLSLGHYLKSIVVMPGSLRIVCLTNLFCWMAHVC 401
           QS+S     + S S+   G + L+L  Y KS+    G   + CL  +FC++ ++C
Sbjct: 212 QSQSLNVFGSHSNSNPGSGIQALNLARYRKSLT---GMFTVYCLF-IFCYLPYIC 262


>SB_4894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 307 LNEQDEFRKMAENERAQESFDEEQALDKIKKDNSSYGTVGQSESAEAGNT 356
           L ++D     ++NER  ES   +  +D+++ DN     V Q+E  E  NT
Sbjct: 363 LADKDADPVFSDNERGSESSGSDTEVDEVELDNIYKDLVKQNEELERKNT 412


>SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)
          Length = 1127

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 305 DKLNEQD-EFRKMAENERAQESFDEEQALDKIKKD 338
           DKL + D E ++ A+NE+A    ++ QA+ KI+K+
Sbjct: 509 DKLRKLDVELKEQAQNEKATLLLEKSQAVSKIEKE 543


>SB_8283| Best HMM Match : Aerolysin (HMM E-Value=2.5e-05)
          Length = 547

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 11  LTGRFHSARDRYKD-RWSTWKEQHPRGVKGILAETLF 46
           LTG+F      + D  WST   + PRG++  LAET F
Sbjct: 427 LTGQFEDVIGHHVDIHWSTTSLKVPRGLERTLAETHF 463


>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 11  LTGRFHSARDRYKD-RWSTWKEQHPRGVKGILAETLF 46
           LTG+F      + D  WST   + PRG++  LAET F
Sbjct: 66  LTGQFEDVIGHHVDIHWSTTSLKVPRGLERTLAETHF 102


>SB_27650| Best HMM Match : Binary_toxA (HMM E-Value=8.2)
          Length = 159

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 167 IGYLLGDEYSSNSTSTPAVLGPRSSLETPEKN 198
           +GY  G+ YSS  TS   V GPRS ++  E N
Sbjct: 86  LGYTKGN-YSSTRTSPTRVKGPRSEIDASEGN 116


>SB_54977| Best HMM Match : MFS_1 (HMM E-Value=0.006)
          Length = 698

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 61  DSEYSDIFRRKSRVELMRISAAVMGIEFSYAGETAFVSPTLL----QIGVPHEEMTLVWA 116
           D +  D  R+K    + R      G  F +      + P L     Q+ +   E+ ++  
Sbjct: 388 DDDEGDETRKKCCPSVNRTLLVPKGFYFFFFSAWGSLLPYLALYFKQLMLSPSEVGILMG 447

Query: 117 LSPLIGFFMTPLLGSLSDRC 136
           L P + F + P+ G++ D+C
Sbjct: 448 LKPFVNFLVIPIWGAIVDKC 467


>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1981

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 432  EAGVRFGCWGMAMYSLSCACYSTVIERLIKKLG 464
            E G+R G + +++Y L  ACY  V++R++  LG
Sbjct: 1114 EEGIRNGDYKLSLYELQSACYQ-VLQRVMVGLG 1145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,207,873
Number of Sequences: 59808
Number of extensions: 723323
Number of successful extensions: 1672
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1668
Number of HSP's gapped (non-prelim): 12
length of query: 594
length of database: 16,821,457
effective HSP length: 86
effective length of query: 508
effective length of database: 11,677,969
effective search space: 5932408252
effective search space used: 5932408252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)