Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002470-TA|BGIBMGA002470-PA|IPR005024|Snf7
(225 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 149 2e-37
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa... 56 3e-09
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 34 0.015
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 33 0.026
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 33 0.026
SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar... 33 0.045
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 33 0.045
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 33 0.045
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 32 0.079
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 31 0.10
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 29 0.56
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 29 0.73
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 28 0.97
SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c... 28 1.3
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 1.7
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 27 2.2
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 3.0
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom... 27 3.0
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 27 3.0
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa... 26 3.9
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 26 3.9
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 5.2
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 5.2
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 26 5.2
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 26 5.2
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 6.8
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 6.8
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 9.1
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 9.1
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 25 9.1
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma... 25 9.1
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 25 9.1
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 149 bits (362), Expect = 2e-37
Identities = 66/151 (43%), Positives = 105/151 (69%)
Query: 1 MNRLFGRAKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTELRKYKDQMSKMREGPAKNS 60
M+RLFGR P +P S+TD I ++D R+D++E K+ KLD +L ++ +++ R GP + +
Sbjct: 1 MHRLFGRKPPTQPTASLTDAIDSLDKRSDSVEVKIAKLDAQLSVFQQKIANTRPGPGQTA 60
Query: 61 VKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEF 120
+KQ+AM VL+QKK+YE QL L+ QSFNMEQA T++LK+T T+ M++ Q+K +
Sbjct: 61 LKQRAMNVLRQKKIYESQLQQLQQQSFNMEQAAMTTESLKNTMATVQTMQETARQLKSQS 120
Query: 121 KKINIDSIDDVNDELADMMEQADEVQEALGR 151
K ++I+ I+ + DE+ D M+ A E+ E LG+
Sbjct: 121 KNVSIEKIEKLQDEIQDYMDAAGELNEVLGQ 151
>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
Vps32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 56.4 bits (130), Expect = 3e-09
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 48 QMSKMREGPAKNSVKQK--AMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTT 105
Q+++ E KN+ K A+ LK+KKM+E +L + N+EQ ++ Q T
Sbjct: 41 QIAEQTEIARKNATTNKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFET 100
Query: 106 ISAMKDGVTQMKKEFKKINIDSIDDVNDELADMMEQADEVQEALGRQYGM 155
+ AM+ G MK + ++ D +D + D++ D ++E+ + G+
Sbjct: 101 LQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQTISEEISTMISTPVGL 150
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 34.3 bits (75), Expect = 0.015
Identities = 33/147 (22%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 29 DNIEQKVQKLDTELR---KYKDQMSKMREGPAKNSVKQ--KAMRVLKQKKMYE------- 76
DN+E+K+++L E+R + KD+ SK R A+ +Q + R +++K E
Sbjct: 417 DNLERKLRQLRVEIRALEREKDEASKERLKAARKEAEQVEEETRPIREKYELEKSRGSEL 476
Query: 77 ----QQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDV- 131
++LD L+A++ + E+ N T + I ++ + ++++ +K + ++I +
Sbjct: 477 QDAKRRLDELKAKAEDAERRNDFTLAADLKYYGIPDLQKRIEYLEQQKRKADAEAIANAQ 536
Query: 132 --NDELADMMEQADEVQEALGRQYGMP 156
++ L + D++ E + R G+P
Sbjct: 537 PGSEPLLIDVVGPDQINEIVARWTGIP 563
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 33.5 bits (73), Expect = 0.026
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 25 DGRADNIEQKVQKLDTELRK---YKDQMSKMREGPAKNSVKQKAMR-VLKQKKMYEQQLD 80
D A+N +K D+ ++K ++ + K R +S+ + +R + KQK M EQ LD
Sbjct: 1401 DQEANNSSDTRKKYDSIIKKRDSLREDLEKFRSTGKNSSILEAQLREITKQKNMLEQSLD 1460
Query: 81 NLR 83
++R
Sbjct: 1461 DMR 1463
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 33.5 bits (73), Expect = 0.026
Identities = 25/131 (19%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 24 VDGRADNIEQKVQKLD---TELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLD 80
V+ + + IE LD T + ++D + + R+ K++++QK + + + + +L+
Sbjct: 767 VEMQTNVIEASASALDVSNTAILSFEDSLRRERD--EKSTLQQKCLNLQYEYENVRIELE 824
Query: 81 NLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEF--KKINIDSIDDVNDELADM 138
NL++++ +E A Q++ D + + M+ G++++ K N+ +++ +
Sbjct: 825 NLQSRALELESA--LEQSVSDAKYSKAIMQSGLSKLLSSINENKDNLKEFSKSKQKISYL 882
Query: 139 MEQADEVQEAL 149
Q + + E L
Sbjct: 883 ESQLEGLHELL 893
>SPBC215.14c |vps20||vacuolar sorting protein
Vps20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 226
Score = 32.7 bits (71), Expect = 0.045
Identities = 19/92 (20%), Positives = 43/92 (46%)
Query: 58 KNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMK 117
++S K+ A+R LK KK+Y + Q N+EQ + + +++G ++
Sbjct: 48 RDSDKRGALRALKAKKLYSGLITQTYGQLGNIEQLLSTIEFTLIQKDVMFGLQEGTNLIR 107
Query: 118 KEFKKINIDSIDDVNDELADMMEQADEVQEAL 149
+ + ++ + + ++ + M DEV + L
Sbjct: 108 QLQADMPLERVGRICNDRDEAMSYVDEVNDML 139
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 32.7 bits (71), Expect = 0.045
Identities = 29/144 (20%), Positives = 64/144 (44%), Gaps = 7/144 (4%)
Query: 8 AKPKEPGPSITDCIKNVDGRADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMR 67
AK + +TD I +A +EQK + + +RK + ++ + + SV +
Sbjct: 386 AKLRSTNAQLTDRITQESKKASFLEQKASEQEEVIRKLEKDLADV---DVEGSV-YLSNT 441
Query: 68 VLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDS 127
+++ Q N N + + + T SA+ D + Q + F++ N+
Sbjct: 442 TYRREGTSGQLSPTSSIMGGNPSLFNGSVLSRNSVNETGSAIVDVIKQQRDRFRRANVTL 501
Query: 128 IDDV---NDELADMMEQADEVQEA 148
++ V ND++A + + +EV+++
Sbjct: 502 VNQVSAANDKIALLESKLEEVEKS 525
Score = 29.5 bits (63), Expect = 0.42
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 29 DNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYE 76
+ +E++V+ L EL KYKD + E A + ++ L+Q+K+Y+
Sbjct: 141 EKLEREVENLRKELDKYKDLVETEAEKRAAITKEECEKSWLEQQKLYK 188
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 32.7 bits (71), Expect = 0.045
Identities = 24/127 (18%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 21 IKNVDGRADNIEQKVQ---KLDTELRKYKDQMSKMREGPAKNS-VKQKAMRVLKQKKMYE 76
I N++ + + +E V+ KL EL D+ + KN ++ K L K
Sbjct: 1071 INNLEEKVNYLEADVKQLPKLKKELESLNDKDQLYQLQATKNKELEAKVKECLNNIKSLT 1130
Query: 77 QQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFK--KINIDSIDDVNDE 134
++L+N + N+ A+ L++ H + + KK+++ +++++ + DV+
Sbjct: 1131 KELENKEEKCQNLSDASLKYIELQEIHENLLLKVSDLENYKKKYEGLQLDLEGLKDVDTN 1190
Query: 135 LADMMEQ 141
++ ++
Sbjct: 1191 FQELSKK 1197
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 31.9 bits (69), Expect = 0.079
Identities = 24/132 (18%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 22 KNVDGR-ADNIEQK--VQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQ 78
K++DG AD I+ + + + L + +Q+S++ K K A+ L++KK+ +
Sbjct: 246 KSIDGSVADLIQARASIAQRSEFLNEELEQLSQVLNQAVKKGEKTIAITYLRRKKILSKD 305
Query: 79 LDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKI-NIDSIDDVNDELAD 137
L+ + ++ D + AM G + ++ + ++DV + + D
Sbjct: 306 LERKVSSRLQLDTIISNIDNAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVND 365
Query: 138 MMEQADEVQEAL 149
+ +++E+ +
Sbjct: 366 TLARSEEIDATI 377
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 31.5 bits (68), Expect = 0.10
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 19/135 (14%)
Query: 11 KEPGPSITDCIKNVDGRADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLK 70
KE +TD I + R ++ + +L L+ +++ +K AK K +L+
Sbjct: 598 KEEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNK-----AKEDSTSKTSNLLE 652
Query: 71 QKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDD 130
Q KM E ++D+LR ++ +Q + A+K+ + K + + I+
Sbjct: 653 QLKMTEAEVDSLRKENEENKQ--------------VIALKESELVKSNDNKLLLNEQIES 698
Query: 131 VNDELADMMEQADEV 145
+ND+L+ + + + V
Sbjct: 699 LNDQLSQLKTEMESV 713
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 29.1 bits (62), Expect = 0.56
Identities = 18/95 (18%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 28 ADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSF 87
++ +++ V+KLD + Y+D +K+ G + + + +L++ + +N ++
Sbjct: 46 SERLQESVKKLDANKKTYED--AKLSMGEKMDDLNSSIVSLLQELSTLQSVAENTQSSIV 103
Query: 88 NM----EQANYATQTLKDTHTTISAMKDGVTQMKK 118
M + ++A Q L + T + ++ VT +K
Sbjct: 104 QMTSEIKNLDFAKQNLATSMTMLKRLQMLVTAYEK 138
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 28.7 bits (61), Expect = 0.73
Identities = 28/136 (20%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 16 SITDCIKNVDGRADNIEQ-KVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRV--LKQK 72
++ D I + G I++ KV L +L+ KD+++KM KN + ++ +V
Sbjct: 921 TLQDKIMEIGGIRYRIQKSKVDDLHEQLKFVKDKLNKMSFKKKKNEQRSQSFQVELSNLT 980
Query: 73 KMYEQQLDNLRAQSFNMEQAN-YATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDV 131
Y+ +++ ++ N Y + +A+ D + + + K I +S +
Sbjct: 981 SEYDTTTESIATLKTELQSLNKYVDEHKSRLREFENALWDINSSIDELVKFIEFES-KQM 1039
Query: 132 NDELADMMEQADEVQE 147
N A+ +E +++QE
Sbjct: 1040 NSVKAERIELENQIQE 1055
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 28.3 bits (60), Expect = 0.97
Identities = 11/59 (18%), Positives = 27/59 (45%)
Query: 31 IEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNM 89
I +K+Q +D E+ + ++ +R G K K+ + K ++ N + +++
Sbjct: 129 IREKIQSIDKEIEETSSKLESLRNGTVKQISKEAMQKTDKNYDFAKKGFSNRKKMFYDL 187
>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 124
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 64 KAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKD 111
+A+ V K+ K+++++L NLR + + E+A A + + S + D
Sbjct: 69 QALLVHKKGKVHKRRLKNLREEPYTQEEAEAAVNIGQPKQSVASKLAD 116
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 27.5 bits (58), Expect = 1.7
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 31 IEQKVQKLDTELRKYKDQMSKM--REGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFN 88
IE + + E+++ ++S++ PA VK + + ++ Q L +
Sbjct: 441 IEARQSEKLNEVQEETQRLSQLLISSQPALTEVKHLKLCLSDSQEELLQLNAKLEKANIV 500
Query: 89 MEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSID-DVNDEL 135
+++ N A L S+MKD +T+M + K+ I+S + +VN E+
Sbjct: 501 IDELNSAKLKLSKQVEEESSMKDDLTEMNQRLKE-QIESYENEVNSEI 547
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 27.1 bits (57), Expect = 2.2
Identities = 21/97 (21%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 60 SVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTH-TTISAMKDGVTQMKK 118
S +Q+A++ +++ Y L + E+AN T ++ T+ + I+A+ ++Q+
Sbjct: 346 SDEQRALQTIRRGMRYCPSNFVLHVRYAEHEEANNRTSEIRSTYESLIAALAREISQLDS 405
Query: 119 EFKKINIDSIDDVNDELADMMEQADEVQEALGRQYGM 155
+ + +S D N + + E + + L RQY +
Sbjct: 406 KASS-SSESSTDGNPQEKKLPEHLVKRKSRLVRQYSL 441
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 11 KEPGPSITDCIKNVDGRADNIEQKVQKLDTELRKYKDQMSK 51
KE + D ++++ G DN+ ++ TEL+K D + K
Sbjct: 930 KEKHQQLLDLLESLVGNNDNLIDSIKTPHTELQKITDHVLK 970
>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 29 DNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQS 86
+++EQ V + +L + R+ KN V+Q + R+++ + L LRA++
Sbjct: 167 ESLEQLVHEQLNKLNTESKMEFENRKNDTKNEVQQLSARIVELHNLLAVSLGKLRAEN 224
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 29 DNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKK 73
D IEQ + ++K KD + + + PA+ ++ A +V+ +KK
Sbjct: 334 DAIEQTITWAKEYIKKAKDSLLCLPDSPARKALFALADKVITRKK 378
>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 19 DCIKNVDGRADNIEQKVQKLDTELRKYKDQMSKM 52
+C K VDG + IE++++ D ++ ++Q ++
Sbjct: 34 ECYKTVDGDDNPIEERIKACDAGIQTSEEQKKEL 67
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/88 (15%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 47 DQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTTI 106
+Q + + S++++ R L ++ + ++L++ + + E + + K
Sbjct: 57 EQQKREERLALRKSLREQRKRELAERLAFSKELNS--SLENDEESSQQEDSSSKSDSEEE 114
Query: 107 SAMKDGVTQMKKEFKKINIDSIDDVNDE 134
S+M+ T+ ++ K + ++ ++D +DE
Sbjct: 115 SSMEPKTTEYDEDDKHVTVEIVEDDDDE 142
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 29 DNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSF 87
D +QK++ EL K D + E S+ ++ + +K + EQ+++ L++QSF
Sbjct: 1274 DTFYDCIQKIE-ELEKQIDVARDVAEDT--KSLGKELQNKINEKNLAEQKVEELQSQSF 1329
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 82 LRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDE-LADMME 140
L + +E+AN + + + +++ + KK+ KK+N DS DD+ + +++
Sbjct: 50 LTKKDVEVEEANGVEEAAETIESDTKEVQNIKPKSKKKKKKLN-DSSDDIEGKYFEELLA 108
Query: 141 QADEVQE 147
+ DE ++
Sbjct: 109 EEDEEKD 115
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 5.2
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 36 QKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKK------MYEQQLD-NLRAQSFN 88
+KL T L K + ++ + A+NS K +M ++K ++E + N + S
Sbjct: 425 EKLQTYLDKKESNVTSKIKSTAENSSKPLSMNEADERKDGLNNLLFENKSGANTKEMSNG 484
Query: 89 MEQANYATQTLKDTHTTISAMKDGVTQMKKEFK 121
E A +D+ + S +D V ++ KE +
Sbjct: 485 TETAKENCSPQQDSTSPTSGYQDLVKELAKEIE 517
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.8 bits (54), Expect = 5.2
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 29 DNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFN 88
DN++Q ++ + + K + K+ E N + + M + +++ QL L+
Sbjct: 246 DNLKQLKKETRDNVEETKHLLEKLTE---VNVMCDRHMDAISSEELACHQLTQLKKVVQT 302
Query: 89 ME----QANYATQTLKDTH--TTISAMKDGVTQMKKEFKKINID 126
+E + ++ +KD I+ + VTQ+KK+ ++N+D
Sbjct: 303 LEDIYSEHKKVSEDVKDQRFLEAINGINSIVTQLKKKSTELNVD 346
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 6.8
Identities = 18/89 (20%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 30 NIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNM 89
N+E+K+Q +T+ R + + S++ +N ++ + ++ + + N R ++
Sbjct: 85 NLEEKLQLTETKCRNAESEKSRV-----ENELEDLTSSLFEEA---NRMVANARKETVAS 136
Query: 90 E-QANYATQTLKDTHTTISAMKDGVTQMK 117
E + N + L D T +S+ + +T++K
Sbjct: 137 EKRVNQLKKQLVDAETLLSSTQHQLTELK 165
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/92 (17%), Positives = 45/92 (48%)
Query: 56 PAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQ 115
P + +++ A+ ++ ++ LD + + + N + D + +A++ ++
Sbjct: 535 PNRFALEIAALAAARKALSFQDWLDKKMLEFEDADGLNVFLVEVLDFLMSRAALQKNESE 594
Query: 116 MKKEFKKINIDSIDDVNDELADMMEQADEVQE 147
K+E ++ID+++ + L D + ++EV E
Sbjct: 595 QKEESVVLSIDTVNVLLTTLMDNVSISEEVSE 626
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 31 IEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNME 90
+EQ +++L ELR +++ K +N + K +K +YE + A + N +
Sbjct: 517 LEQIIEELHEELRSLEEESIKESSATQQNENQHKRS---SRKLLYEDKQAIQEAHTINTK 573
Query: 91 QANYATQTL 99
+ + TL
Sbjct: 574 RKLWPQSTL 582
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/100 (16%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 30 NIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNM 89
+IE + + E Y + R AKN+ K++ R ++ + YE+ + + + +
Sbjct: 818 SIETFTKLVSVEHPPYSPTSIEQRAKMAKNTTKRQLERAIQAQIEYEKSV-AAKLEDARI 876
Query: 90 EQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSID 129
++ + L + + ++ Q+++E +K+ + ++
Sbjct: 877 QREKEKARRLAEEEALLKEKQERERQLQEERQKMQEEVLE 916
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 33 QKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKK 73
Q+ ++D + K K + SK++E ++S K+K + K+ K
Sbjct: 442 QEDVEMDIVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHK 482
>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 354
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 74 MYEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVN 132
+Y Q D +A S+ +E A+YA L T + + + +E + +NI D +N
Sbjct: 120 LYIQVYDPYKA-SYGVEDADYAISQLAQTTMRSEIGRLTLDHVLRERQSLNIHITDAIN 177
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 9.1
Identities = 22/124 (17%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 28 ADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVK-QKAMRVLKQKKMYEQQLDNLRAQS 86
A+N + + ++ E ++ +S++ KN +K + VLK+ + + ++ +
Sbjct: 2 AENAGNETKLVENE--NLQEDLSRLNLEDEKNELKLNEKGGVLKENDEHLECSESFK--- 56
Query: 87 FNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDELADMMEQADEVQ 146
+ + A QTLK+++ ++ + K + + + ELA ++ E++
Sbjct: 57 -KLAEKEEAYQTLKNSYNSLKQQHSNLLGKVSGIKSTLGERLKKDSQELAQNRKRIQELE 115
Query: 147 EALG 150
++LG
Sbjct: 116 KSLG 119
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.128 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 904,046
Number of Sequences: 5004
Number of extensions: 32276
Number of successful extensions: 146
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 38
length of query: 225
length of database: 2,362,478
effective HSP length: 70
effective length of query: 155
effective length of database: 2,012,198
effective search space: 311890690
effective search space used: 311890690
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)
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