GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002470-TA|BGIBMGA002470-PA|IPR005024|Snf7
         (225 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.58 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   1.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   1.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.1  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   5.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 88  NMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDELADMMEQADEVQE 147
           N ++  Y T+T+   H  + AM + V +MK  +  I       + +E    ++  +E++E
Sbjct: 250 NKQRFEYFTRTIPSDHYQVKAMVEIVMKMKWSYVSI-------IYEESNYGIKAFEELEE 302

Query: 148 ALGRQ 152
            LG++
Sbjct: 303 LLGKR 307


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 27  RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQS 86
           R+   EQK  K + E RKY       RE   + S  +      K+ K+     +N +  +
Sbjct: 41  RSREREQKSYKNEREYRKY-------RETSKERSQDRTERETSKEPKIISSLSNNYKYSN 93

Query: 87  FNMEQANY 94
           +N    NY
Sbjct: 94  YNNYNNNY 101


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 27  RADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQS 86
           R+   EQK  K + E RKY       RE   + S  +      K+ K+     +N +  +
Sbjct: 41  RSREREQKSYKNEREYRKY-------RETSKERSQDRTERETSKEPKIISSLSNNYKYSN 93

Query: 87  FNMEQANY 94
           +N    NY
Sbjct: 94  YNNYNNNY 101


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/29 (31%), Positives = 19/29 (65%), Gaps = 3/29 (10%)

Query: 26  GRADNIEQKVQKLDTELRKYKDQMSKMRE 54
           G A N+   +Q LD+  R+Y++++ ++ E
Sbjct: 372 GHATNL---IQSLDSSRRQYREKVKQVEE 397


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/29 (31%), Positives = 19/29 (65%), Gaps = 3/29 (10%)

Query: 26  GRADNIEQKVQKLDTELRKYKDQMSKMRE 54
           G A N+   +Q LD+  R+Y++++ ++ E
Sbjct: 340 GHATNL---IQSLDSSRRQYREKVKQVEE 365


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
          determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/55 (20%), Positives = 25/55 (45%)

Query: 25 DGRADNIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQL 79
          D +   +  +  K+D   R  ++++   RE       +++    LK+K + E +L
Sbjct: 12 DEKFKQLRNEDNKIDLRSRTKEERLQYRREAWLVQQEREQEYEKLKRKMILEYEL 66


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.128    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,706
Number of Sequences: 429
Number of extensions: 1849
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 225
length of database: 140,377
effective HSP length: 55
effective length of query: 170
effective length of database: 116,782
effective search space: 19852940
effective search space used: 19852940
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 42 (21.0 bits)