GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002469-TA|BGIBMGA002469-PA|IPR008940|Protein
prenyltransferase, IPR013026|Tetratricopeptide region,
IPR011716|Tetratricopeptide TPR_3, IPR001440|Tetratricopeptide TPR_1
         (1272 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    27   0.62 
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    27   0.62 
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    25   4.4  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    24   7.6  

>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 11/43 (25%), Positives = 25/43 (58%)

Query: 438 IKDLDPDFVLEIYKEYKKHLPKKPFIIIGYLLYSQEGNIPVVI 480
           +  +D  F+   ++   K L K+ ++II ++L+S    +PV++
Sbjct: 123 LSHVDVSFIKAGFRLEYKQLLKRSYLIISFVLFSLLARVPVML 165


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 11/43 (25%), Positives = 25/43 (58%)

Query: 438 IKDLDPDFVLEIYKEYKKHLPKKPFIIIGYLLYSQEGNIPVVI 480
           +  +D  F+   ++   K L K+ ++II ++L+S    +PV++
Sbjct: 123 LSHVDVSFIKAGFRLEYKQLLKRSYLIISFVLFSLLARVPVML 165


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase protein.
          Length = 590

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 1096 ERVLQDLLPLVTEDGYQDDPYVVLAIA 1122
            ER   +L+P +TE  Y +D  V+LA+A
Sbjct: 47   ERTRSELIPFLTETIYDEDE-VLLALA 72


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 349 RAASKLDNNSITALCGLTLCQMLENGPTDQITQQIELLFEMQGTE 393
           RA  K  + +   L    + Q L N  T  +T++ E L EMQGT+
Sbjct: 280 RAKIKKASGTKNPLALQLMAQGLYNHSTIPLTKEEEELQEMQGTK 324


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.133    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 266,587
Number of Sequences: 317
Number of extensions: 10409
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 4
length of query: 1272
length of database: 114,650
effective HSP length: 65
effective length of query: 1207
effective length of database: 94,045
effective search space: 113512315
effective search space used: 113512315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)