Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002469-TA|BGIBMGA002469-PA|IPR008940|Protein
prenyltransferase, IPR013026|Tetratricopeptide region,
IPR011716|Tetratricopeptide TPR_3, IPR001440|Tetratricopeptide TPR_1
(1272 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0272 - 17146578-17146691,17146806-17146926,17147260-171473... 45 3e-04
01_06_1788 - 39873900-39873986,39874009-39874137,39874180-398742... 40 0.017
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 36 0.21
03_02_0295 + 7178921-7179451,7180083-7180448,7181316-7181450,718... 34 0.64
02_01_0144 - 1038547-1039650 34 0.84
06_01_0400 + 2862684-2862872,2862956-2863170,2863298-2863448,286... 32 2.6
07_03_0358 - 17177253-17177369,17177635-17177931,17178961-171790... 32 3.4
03_06_0579 + 34870958-34874578 32 3.4
01_05_0706 + 24457148-24458031,24458621-24458822,24458896-244590... 32 3.4
10_08_0706 + 20034534-20034860,20034988-20035368 31 4.5
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906... 31 5.9
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 31 5.9
01_07_0251 + 42289617-42291241,42291424-42292156 31 5.9
01_03_0003 + 11509530-11512772 31 7.8
>02_03_0272 - 17146578-17146691,17146806-17146926,17147260-17147365,
17147469-17147551,17147688-17147815,17147897-17147983,
17148064-17148174,17148502-17148669,17148753-17148837,
17148921-17149037,17149127-17149203,17149299-17149370,
17150538-17150634,17150750-17150952,17151115-17151217,
17151324-17151391,17151461-17151514,17151595-17151704,
17151982-17152060,17152171-17152233,17153410-17153529,
17153913-17153969,17154071-17154187,17156426-17156476,
17156591-17156689,17156787-17156935,17158090-17158312
Length = 953
Score = 45.2 bits (102), Expect = 3e-04
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 7/149 (4%)
Query: 874 IDSKTDLQEERRQLSNILCALAKFKSMREPAVAANLYSEALIH-------TPREPSTLLA 926
+D++ Q E + + + ++ + Y EAL H PR LL
Sbjct: 58 VDARAQAQPEPKPKQLGAVDVERHLALAHQNYRSGKYKEALEHGNIVYEKNPRRTDNLLL 117
Query: 927 LAKLYAQMNNPEKCEQTCAVLLNADPNNESAAVMMADLAFRKVDLETAQRHLNQILSVKP 986
L +Y Q+ N + C L DPN MA+ K D++ A R+ + ++P
Sbjct: 118 LGAIYYQIRNYDMCIAKNEEALAIDPNFAECYGNMANAWKEKGDVDLAIRYYLTAIQLRP 177
Query: 987 TSWEALAQLVEVQWRRGKLSEAEQALELA 1015
+A + L +G+L+EA Q A
Sbjct: 178 NFCDAWSNLASAYTWKGRLNEAAQCCRQA 206
Score = 37.9 bits (84), Expect = 0.052
Identities = 59/298 (19%), Positives = 114/298 (38%), Gaps = 26/298 (8%)
Query: 596 QIATSKSNMSRTFDSDLNIIDKATLYLQIIEIHT--ALGQIGEAGKAMQ--EAIQEFSYT 651
++ + SN+ + I + Y++ + I A+ AG M+ + + Y
Sbjct: 212 RLVDAHSNLGNLMKAQGFIQEAYNCYIEALRIDPQFAIAWSNLAGLFMEAGDLDKALLYY 271
Query: 652 SEETRLLISRADLALNPGDI-------DSAIDILHEIKPGQPYYFQAHSKLAHIYLKN-E 703
E +L S AD LN G++ AI +P Y A+ LA IY + +
Sbjct: 272 KEAVKLKPSFADAYLNQGNVYKTMGMSQEAIISYQRAVQARPDYAMAYGNLATIYYEQGQ 331
Query: 704 KDRAMFTTCFKE-IVSNHPMTDAHTMMGDAFMSIQDPAQAVESYETALRGNLGDLQLTKK 762
D A+ C+ + I+ + +A+ MG+A +A+ Y + L Q
Sbjct: 332 LDIAI--RCYNQAIICDPQFVEAYNNMGNALKDAGRVEEAINCYRSCLALQANHPQALTN 389
Query: 763 LGAALFKMHEYDKAVQHYENAMKT-------FNDDELKFE----YLDLLVRLKQYDKADT 811
LG + + A Y+ A+ N+ + ++ Y D + + + D
Sbjct: 390 LGNIYMEWNLISAAASFYKAAISVTSGLSSPLNNLAVIYKQQGNYADAITCYTEVLRVDP 449
Query: 812 TISSELNQVYNKEKDIGTLRRRVRLLLKQAKCRELKTPTPGNVDLILAEAKELQLSIV 869
T + L N K+IG + ++ ++ A R N+ ++ ++ +IV
Sbjct: 450 TAADALVNRGNTFKEIGRVNEAIQDYIQAATIRPTMAEAHANLASAYKDSGHVETAIV 507
Score = 37.5 bits (83), Expect = 0.068
Identities = 29/117 (24%), Positives = 48/117 (41%)
Query: 669 GDIDSAIDILHEIKPGQPYYFQAHSKLAHIYLKNEKDRAMFTTCFKEIVSNHPMTDAHTM 728
GD+D AI +P + A S LA Y + C + + N + DAH+
Sbjct: 160 GDVDLAIRYYLTAIQLRPNFCDAWSNLASAYTWKGRLNEAAQCCRQALAINPRLVDAHSN 219
Query: 729 MGDAFMSIQDPAQAVESYETALRGNLGDLQLTKKLGAALFKMHEYDKAVQHYENAMK 785
+G+ + +A Y ALR + L + + DKA+ +Y+ A+K
Sbjct: 220 LGNLMKAQGFIQEAYNCYIEALRIDPQFAIAWSNLAGLFMEAGDLDKALLYYKEAVK 276
Score = 31.5 bits (68), Expect = 4.5
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 904 AVAANLYSEALIHTPREPSTLLALAKLYAQMNNPEKCEQTCAVLLNADPNNESAAVMMAD 963
+ AA+ Y A+ T S L LA +Y Q N +L DP A V +
Sbjct: 401 SAAASFYKAAISVTSGLSSPLNNLAVIYKQQGNYADAITCYTEVLRVDPTAADALVNRGN 460
Query: 964 LAFRKVD-LETAQRHLNQILSVKPTSWEALAQLVEVQWRRGKLSEA----EQALEL 1014
F+++ + A + Q +++PT EA A L G + A +QAL L
Sbjct: 461 -TFKEIGRVNEAIQDYIQAATIRPTMAEAHANLASAYKDSGHVETAIVSYKQALRL 515
>01_06_1788 -
39873900-39873986,39874009-39874137,39874180-39874246,
39874874-39874909,39875146-39875292,39875772-39875899,
39876349-39876435,39876523-39876633,39877433-39877600,
39877665-39877749,39877826-39877942,39878051-39878127,
39879981-39880077,39880175-39880377,39880519-39880645,
39880687-39880754,39880855-39880908,39880990-39881108,
39881651-39881729,39881803-39881865,39882113-39882232,
39882718-39882774,39882872-39882988,39883122-39883172,
39883262-39883360,39883438-39883583,39883740-39883887
Length = 928
Score = 39.5 bits (88), Expect = 0.017
Identities = 26/117 (22%), Positives = 48/117 (41%)
Query: 669 GDIDSAIDILHEIKPGQPYYFQAHSKLAHIYLKNEKDRAMFTTCFKEIVSNHPMTDAHTM 728
GD+D+AI +P + A + LA+ Y + C + + N + DA+
Sbjct: 134 GDVDNAIQFYVHAVQLRPTFADAWTNLANAYTRKGNLSQAAECCHQALALNPHLADAYCN 193
Query: 729 MGDAFMSIQDPAQAVESYETALRGNLGDLQLTKKLGAALFKMHEYDKAVQHYENAMK 785
+GD + +A Y AL + L + +++KA +Y+ A+K
Sbjct: 194 LGDVLKAQGLYREAYSHYLDALNIKPTFANAWNNIAGLLMQWGDFNKAALYYKEAIK 250
Score = 34.7 bits (76), Expect = 0.48
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 918 PREPSTLLALAKLYAQMNNPEKCEQTCAVLLNADPNNESAAVMMADLAFRKVDLETAQRH 977
PR LL L +Y Q+ + C + PN +A+ K D++ A +
Sbjct: 83 PRLLENLLLLGAVYYQLREFDMCIAKNEEAVAIQPNCPECFNSIANAWREKGDVDNAIQF 142
Query: 978 LNQILSVKPTSWEALAQLVEVQWRRGKLSEA----EQALELAKQHLDD 1021
+ ++PT +A L R+G LS+A QAL L HL D
Sbjct: 143 YVHAVQLRPTFADAWTNLANAYTRKGNLSQAAECCHQALAL-NPHLAD 189
Score = 32.7 bits (71), Expect = 1.9
Identities = 29/124 (23%), Positives = 50/124 (40%)
Query: 885 RQLSNILCALAKFKSMREPAVAANLYSEALIHTPREPSTLLALAKLYAQMNNPEKCEQTC 944
R L N+L A + +RE + EA+ P P ++A + + + + Q
Sbjct: 84 RLLENLLLLGAVYYQLREFDMCIAKNEEAVAIQPNCPECFNSIANAWREKGDVDNAIQFY 143
Query: 945 AVLLNADPNNESAAVMMADLAFRKVDLETAQRHLNQILSVKPTSWEALAQLVEVQWRRGK 1004
+ P A +A+ RK +L A +Q L++ P +A L +V +G
Sbjct: 144 VHAVQLRPTFADAWTNLANAYTRKGNLSQAAECCHQALALNPHLADAYCNLGDVLKAQGL 203
Query: 1005 LSEA 1008
EA
Sbjct: 204 YREA 207
Score = 32.7 bits (71), Expect = 1.9
Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 5/127 (3%)
Query: 662 ADLALNPGDIDSAIDILHEIKPGQPYYFQAHSKLAHIYLKNEKDRAMFTTCFKEIVSNHP 721
A L + GD + A E P ++ AH L ++Y K R CF+ P
Sbjct: 229 AGLLMQWGDFNKAALYYKEAIKCNPAFYDAHLNLGNLY-KVTGMRQDAIVCFQNAARAKP 287
Query: 722 MTD-AHTMMGDAFMSIQDPAQ---AVESYETALRGNLGDLQLTKKLGAALFKMHEYDKAV 777
A+ G+ + + Q A+ SY A+ N ++ LG AL ++A+
Sbjct: 288 ENAVAYVFSGNLGNAYHEQGQLDLAILSYRQAIHCNSSYVEAYNNLGNALKDAGRNEEAI 347
Query: 778 QHYENAM 784
Y+ +
Sbjct: 348 SCYQTCL 354
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 35.9 bits (79), Expect = 0.21
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 726 HTMMGDAFMSIQDPAQAVESYETALRGNLGDLQLTKKLGAALFKMHEYDKAVQHYENAMK 785
H+ G+ F Q +AV+ Y ALR N D ++ A K+ + ++ E ++
Sbjct: 566 HSCAGNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGLKDAEKCIE 625
Query: 786 ---TFNDDELKFEYLDLLVRLKQYDKADTTISSELNQVYNKEKDIGTLRRRVRLLLKQAK 842
TF+ + + +K+YDKA T + L N ++ + +RR V+ + K ++
Sbjct: 626 LDPTFSKGYTRKGAIQFF--MKEYDKALETYQAGLKHDPNNQELLDGVRRCVQRINKASR 683
>03_02_0295 +
7178921-7179451,7180083-7180448,7181316-7181450,
7181533-7181606,7181960-7181999,7182178-7182223,
7182398-7182477,7182585-7182760,7182848-7182973,
7183338-7183430,7184135-7184260,7184815-7184884,
7185262-7185344,7186216-7186329,7186884-7186983,
7187557-7187583
Length = 728
Score = 34.3 bits (75), Expect = 0.64
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 695 LAHIYLKNEKDRAMFTTCFKEIVSNHPMTDAHTMMGDAFMSIQDPAQAVESYETALRGNL 754
+ ++ + N K F T K I + P+ + MG ++++ +AV+ +E L
Sbjct: 608 MQYLRMHNFKLAEQFFTQAKSICPSDPLI--YNEMGVVAYNMKEYQKAVQWFELTLEHTS 665
Query: 755 GDLQ-----LTKKLGAALFKMHEYDKAVQHYENAMKTFNDDEL 792
L LG AL K+ +Y KA+ +YE A+ TF L
Sbjct: 666 SSLNEMWEPTLVNLGHALRKLKKYQKAISYYEKAL-TFQTKSL 707
>02_01_0144 - 1038547-1039650
Length = 367
Score = 33.9 bits (74), Expect = 0.84
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 1056 RDTRLLALRTAEKLLVEVNP--AERKPLQALLQL--ATKNKGQAERVLQDLLPLVTEDGY 1111
R R ++ A LL E++P A P ALL L A +G+ + Q LLP++ + G
Sbjct: 112 RLARHRSVAAARGLLAELHPSPASPPPRPALLALSDAVCRRGEPREIAQ-LLPVLADHGV 170
Query: 1112 QDDPYVVLAIANAYNITKQPTRAKNILKR 1140
+ D V A+ A+ P +L+R
Sbjct: 171 KADAPVYNALMKAHCAASDPAGVLGVLRR 199
>06_01_0400 +
2862684-2862872,2862956-2863170,2863298-2863448,
2863566-2863757,2864471-2864633,2864754-2864989,
2865446-2865622,2865707-2865826,2865939-2866241
Length = 581
Score = 32.3 bits (70), Expect = 2.6
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 56 GISELTPLQSDSEIQLAVIIALVYAYKVSNLPEKEVLFNLESKLKE 101
GISE T LQ+ +++L I+ L Y N+ E + + L+SKLK+
Sbjct: 382 GISESTALQAIKQLELEDIVTLTY-----NISEADAVIALQSKLKK 422
>07_03_0358 -
17177253-17177369,17177635-17177931,17178961-17179032,
17179117-17179383,17179752-17179910,17180194-17180295,
17180696-17180767,17181105-17181200,17181710-17181871,
17181941-17182021,17182837-17183094,17183173-17183275,
17183412-17183542,17184827-17184919,17184999-17185099,
17186271-17186355,17186487-17186701,17186779-17186842,
17187128-17187214,17188922-17189022,17190206-17190397,
17190533-17190599,17191211-17191351
Length = 1020
Score = 31.9 bits (69), Expect = 3.4
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 3/133 (2%)
Query: 617 KATLYLQIIEIHTALGQIGEAGKAMQEAIQEFSYTSEETRLLISRADLALNPGDIDSAID 676
K+ + + + + G I AG+ ++ E S + + L D S++
Sbjct: 275 KSHAFYNLARSYHSKGDIETAGRYYMASVNEISKPQDFVLPFFGLGQIQLKFADYKSSLA 334
Query: 677 ILHEIKPGQPYYFQAHSKLAHIYLKN-EKDRAMFTTCFKEIVSNHPMTDAHTMMGDAFMS 735
++ P ++ + HIY K+ E D+A+ T FK++ P M +
Sbjct: 335 SFEKVLEVHPENCESLKAIGHIYAKSGENDKAIET--FKKVTRIDPKDHQAFMELGELLV 392
Query: 736 IQDPAQAVESYET 748
D A A+E +T
Sbjct: 393 QSDWATAMEYLKT 405
>03_06_0579 + 34870958-34874578
Length = 1206
Score = 31.9 bits (69), Expect = 3.4
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 25 ISNEALQQNPRNSEFIFYTGIALILEGQVH-KGISELTPLQSDSEIQLAVIIALVYAYKV 83
+ E + N + EF Y +A +L +G++++ P++S +Q+ V V
Sbjct: 429 VEEEEGEVNGKEIEFFDYAALAELLRAATPGQGMAKVFPIESSVPLQVPPTTVSVPRKNV 488
Query: 84 SNLPEKEVLFNLESKLKEEKK 104
++ P EV N ++++ EE++
Sbjct: 489 ASSPVLEVAPNPDNEMTEEER 509
>01_05_0706 + 24457148-24458031,24458621-24458822,24458896-24459080,
24459170-24459503,24459614-24459818,24460022-24460128,
24460220-24460381
Length = 692
Score = 31.9 bits (69), Expect = 3.4
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Query: 904 AVAANLYSEALIHTPREPSTLLALAKLYAQMNNPEKCEQTCAVLLNADPNNESAAVMMAD 963
A A Y A+ P + A A + + C + DP N A +A
Sbjct: 232 AEALRHYDRAVALCPESAACRGNRAAALAGLGRLADALRDCEEAVRLDPANGRAHSRLAG 291
Query: 964 LAFRKVDLETAQRHLNQ---ILSVKPTSWEALAQLVEVQWRRGKLSEAEQ 1010
L R + A+RHL Q + P+ WE +L EV+ +G+ +A +
Sbjct: 292 LCLRLGMISKARRHLTQAGHLHQSDPSEWE---KLQEVEMHQGRSIDARK 338
>10_08_0706 + 20034534-20034860,20034988-20035368
Length = 235
Score = 31.5 bits (68), Expect = 4.5
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 1147 WSPEKGDGLERCWLEVAEGQISSGRTDAAKELLTKILNHN---NSCARAYQYLAEKEQNY 1203
W+ D L + WL+ + G+ + +A KE T + N C++ + Y
Sbjct: 102 WAAYIDDKLLKSWLQASMGKTEEEKAEALKETFTAVANLEAAFEECSKGKPFFGGDAVGY 161
Query: 1204 KSAAHNYDNAWSHAG 1218
+W HAG
Sbjct: 162 LDVTLGALVSWVHAG 176
>11_03_0026 -
9057965-9058234,9059410-9059522,9059612-9059802,
9060606-9060720,9061781-9061907,9062915-9062990,
9064247-9064365,9065430-9065593,9065666-9065779,
9065966-9066065,9066276-9066340,9068175-9068253,
9069513-9069659,9069904-9070161,9070657-9070852,
9071179-9071402,9072531-9072554
Length = 793
Score = 31.1 bits (67), Expect = 5.9
Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 3/147 (2%)
Query: 674 AIDILHEIKPGQPYYFQAHSKLAHIYLK-NEKDRAMFTTCFKEIVSNHPMTDAHTMMGDA 732
AI ILHE+ P ++ L IY + E D+A+ VS + ++ D
Sbjct: 23 AIPILHEVVRIAPNLSNSYHLLGSIYKECGELDKAINFLMLAAYVSPKDVFLWKKLI-DM 81
Query: 733 FMSIQDPAQAVESYETALRGNLGDLQLTKKLGAALFKMHEYDKAVQHYENAMKTFNDDEL 792
+ +D A A A+R + D+ L +H+Y KA + YE ++ + + +
Sbjct: 82 ALKKEDAALARHCVLKAMRADPEDVGLKFDCANIYRALHDYQKAGEIYEQIVRIYPSNIV 141
Query: 793 KFEYLDLLVR-LKQYDKADTTISSELN 818
+ + R Q DKA + +N
Sbjct: 142 ARKAAAQMYRDCGQIDKAINLLEDYVN 168
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 31.1 bits (67), Expect = 5.9
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 758 QLTKKLGAALFKMHEYDKAVQHYENAMKTFNDD 790
Q K+ G A +K +++ A+QHY AM+ ++D
Sbjct: 251 QKEKEAGNAAYKKKDFETAIQHYTKAMELDDED 283
>01_07_0251 + 42289617-42291241,42291424-42292156
Length = 785
Score = 31.1 bits (67), Expect = 5.9
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 970 DLETAQRHLNQILSVKPTSWEALAQLVEVQWRRGKLSEAEQALELAKQHLDDPDDPGYKY 1029
DLE Q N+I+ ++PTS + L + G+LS A + +L KQ +PG +
Sbjct: 604 DLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQR-GVKKEPGLSW 662
Query: 1030 CAGVCAAY 1037
C +
Sbjct: 663 IELKCGVH 670
>01_03_0003 + 11509530-11512772
Length = 1080
Score = 30.7 bits (66), Expect = 7.8
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 1110 GYQDDPYVV-LAIANAYNITKQPTRAKNILKRTISSIVWSPEKGDGLERCWLEVAEGQIS 1168
G QD P + LAI+N ++ LKR E GLE CW+ + QI+
Sbjct: 915 GQQDFPCLQELAISNCLSLNSLSLYNMVALKRLTVKGCQDLEAIKGLEECWVSINHSQIN 974
Query: 1169 SGRTDAAKELL 1179
T E++
Sbjct: 975 CTDTSGYSEIV 985
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.133 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,698,796
Number of Sequences: 37544
Number of extensions: 1211133
Number of successful extensions: 3320
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3277
Number of HSP's gapped (non-prelim): 55
length of query: 1272
length of database: 14,793,348
effective HSP length: 91
effective length of query: 1181
effective length of database: 11,376,844
effective search space: 13436052764
effective search space used: 13436052764
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 66 (30.7 bits)
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