Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002469-TA|BGIBMGA002469-PA|IPR008940|Protein
prenyltransferase, IPR013026|Tetratricopeptide region,
IPR011716|Tetratricopeptide TPR_3, IPR001440|Tetratricopeptide TPR_1
(1272 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 28 0.56
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 28 0.56
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 27 0.74
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 27 0.74
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 27 0.74
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 27 0.74
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 27 0.74
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 27 0.74
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 27 0.74
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 27 0.74
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 27 0.74
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 27 0.74
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 27 0.74
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 25 3.0
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 24 6.9
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 27.9 bits (59), Expect = 0.56
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 42 YTGIALILEGQVHK-GISELTPLQSDSEIQLAVIIALV 78
+T + L EG++ K GI+ P +D ++ L +I+A V
Sbjct: 1585 FTFVTLTKEGELSKRGIASTVPFYADVKVMLPLIVATV 1622
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 27.9 bits (59), Expect = 0.56
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 42 YTGIALILEGQVHK-GISELTPLQSDSEIQLAVIIALV 78
+T + L EG++ K GI+ P +D ++ L +I+A V
Sbjct: 1581 FTFVTLTKEGELSKRGIASTVPFYADVKVMLPLIVATV 1618
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 27.5 bits (58), Expect = 0.74
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 1168 SSGRTDAAKELLTKILNHNNSCARAYQYLAEKEQNYKSAAHNYD 1211
S RT+ + KI+++NNS + Y Y NY + +NY+
Sbjct: 67 SRNRTERERSKEPKIISNNNSLSNNYNY----NNNYNNYNNNYN 106
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 27.5 bits (58), Expect = 0.74
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 1168 SSGRTDAAKELLTKILNHNNSCARAYQYLAEKEQNYKSAAHNYDNAW 1214
S RT+ + KI+++NNS + Y Y NY HNY+ +
Sbjct: 67 SRNRTERERSKEPKIISNNNSLSNNYNY-NNNYNNYNK--HNYNKLY 110
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 27.5 bits (58), Expect = 0.74
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 1168 SSGRTDAAKELLTKILNHNNSCARAYQYLAEKEQNYKSAAHNYDNAW 1214
S RT+ + KI+++NNS + Y Y NY HNY+ +
Sbjct: 67 SRNRTERERSKEPKIISNNNSLSNNYNY-NNNYNNYNK--HNYNKLY 110
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 27.5 bits (58), Expect = 0.74
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 1168 SSGRTDAAKELLTKILNHNNSCARAYQYLAEKEQNYKSAAHNYDNAW 1214
S RT+ + KI+++NNS + Y Y NY HNY+ +
Sbjct: 67 SRNRTERERSKEPKIISNNNSLSNNYNY-NNNYNNYNK--HNYNKLY 110
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 27.5 bits (58), Expect = 0.74
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 1168 SSGRTDAAKELLTKILNHNNSCARAYQYLAEKEQNYKSAAHNYDNAW 1214
S RT+ + KI+++NNS + Y Y NY HNY+ +
Sbjct: 67 SRNRTERERSKEPKIISNNNSLSNNYNY-NNNYNNYNK--HNYNKLY 110
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 27.5 bits (58), Expect = 0.74
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 1168 SSGRTDAAKELLTKILNHNNSCARAYQYLAEKEQNYKSAAHNYDNAW 1214
S RT+ + KI+++NNS + Y Y NY HNY+ +
Sbjct: 67 SRNRTERERSKEPKIISNNNSLSNNYNY-NNNYNNYNK--HNYNKLY 110
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 27.5 bits (58), Expect = 0.74
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 1168 SSGRTDAAKELLTKILNHNNSCARAYQYLAEKEQNYKSAAHNYDNAW 1214
S RT+ + KI+++NNS + Y Y NY HNY+ +
Sbjct: 67 SRNRTERERSKEPKIISNNNSLSNNYNY-NNNYNNYNK--HNYNKLY 110
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 27.5 bits (58), Expect = 0.74
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 1168 SSGRTDAAKELLTKILNHNNSCARAYQYLAEKEQNYKSAAHNYDNAW 1214
S RT+ + KI+++NNS + Y Y NY HNY+ +
Sbjct: 67 SRNRTERERSKEPKIISNNNSLSNNYNY-NNNYNNYNK--HNYNKLY 110
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 27.5 bits (58), Expect = 0.74
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 1168 SSGRTDAAKELLTKILNHNNSCARAYQYLAEKEQNYKSAAHNYDNAW 1214
S RT+ + KI+++NNS + Y Y NY HNY+ +
Sbjct: 67 SRNRTERERSKEPKIISNNNSLSNNYNY-NNNYNNYNK--HNYNKLY 110
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 27.5 bits (58), Expect = 0.74
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 1168 SSGRTDAAKELLTKILNHNNSCARAYQYLAEKEQNYKSAAHNYDNAW 1214
S RT+ + KI+++NNS + Y Y NY HNY+ +
Sbjct: 300 SRNRTERERSKEPKIISNNNSLSNNYNY-NNNYNNYNK--HNYNKLY 343
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 27.5 bits (58), Expect = 0.74
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 1168 SSGRTDAAKELLTKILNHNNSCARAYQYLAEKEQNYKSAAHNYDNAW 1214
S RT+ + KI+++NNS + Y Y NY HNY+ +
Sbjct: 300 SRNRTERERSKEPKIISNNNSLSNNYNY-NNNYNNYNK--HNYNKLY 343
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 25.4 bits (53), Expect = 3.0
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 1168 SSGRTDAAKELLTKILNHNNSCARAYQYLAEKEQNYKSAAHNYDNAW 1214
S RT+ + KI+++NN + Y Y NY HNY+ +
Sbjct: 67 SRNRTERERSKEPKIISNNNPLSNNYNY-NNNYNNYNK--HNYNKLY 110
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 24.2 bits (50), Expect = 6.9
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 53 VHKGISELTPLQSDSEIQLAVIIALVYAYKVSNLPEKEVLFNLESKLKEEKKHASITSYY 112
VH GI +T QSD E+ A++Y + V N ++K+E ++ +
Sbjct: 512 VHYGIGFIT--QSDIELA-NTFKAIIYGFNV----------NATKQIKDEANKKGVSLRF 558
Query: 113 YSALFLSLAEINEKASDYLNKV 134
Y+ ++ + I ++ D L +V
Sbjct: 559 YNVVYKLIDNIKKEIYDILPEV 580
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.318 0.133 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 330,083
Number of Sequences: 429
Number of extensions: 13741
Number of successful extensions: 51
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 15
length of query: 1272
length of database: 140,377
effective HSP length: 66
effective length of query: 1206
effective length of database: 112,063
effective search space: 135147978
effective search space used: 135147978
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)
- SilkBase 1999-2023 -