GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002468-TA|BGIBMGA002468-PA|undefined
         (72 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   0.42 
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    20   2.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    19   3.9  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    18   9.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 0.42
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 26  QFAVSIKGEDAVISYEKKGKGITLIHTNVPQAFQGKGVGKLLAQVI 71
           Q A S++  + ++ YE K +G  ++      AF  K  GK + + I
Sbjct: 616 QVANSLRQYEDLLEYEAKEEGPKVVCYMTNWAFYRKAEGKFVPEHI 661


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 20.2 bits (40), Expect = 2.2
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 16  LKVVNNVAKQQFAVSIKGEDAVISYEKKG 44
           +K + N+ +QQ A+S   + +V+S  + G
Sbjct: 85  VKHLQNLQRQQAAMSAATDPSVVSKFRAG 113


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.4 bits (38), Expect = 3.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 17   KVVNNVAKQQFAVSIKGEDAVISYE 41
            K+V N+  Q  +   K  D+ + YE
Sbjct: 1255 KIVPNLRNQNLSHQAKNLDSNLKYE 1279


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 18.2 bits (35), Expect = 9.0
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 25  QQFAVSIKGEDAVISYEKKGKGITLIH 51
           Q F  S   E+  ++Y ++  G+ L H
Sbjct: 181 QDFTASDLDEEHRVAYWREDIGLNLHH 207


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.132    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,133
Number of Sequences: 317
Number of extensions: 297
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 72
length of database: 114,650
effective HSP length: 45
effective length of query: 27
effective length of database: 100,385
effective search space:  2710395
effective search space used:  2710395
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.0 bits)
S2: 35 (18.2 bits)