Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002468-TA|BGIBMGA002468-PA|undefined
(72 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi... 24 2.1
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 24 2.8
SPAC8C9.05 |||D-Tyr-tRNA deacylase |Schizosaccharomyces pombe|ch... 23 3.7
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy... 23 3.7
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 23 3.7
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 23 6.5
SPAC29E6.05c ||SPAC30.09c|peptide methionine sulfoxide reductase... 23 6.5
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 22 8.6
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 22 8.6
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc... 22 8.6
>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 377
Score = 24.2 bits (50), Expect = 2.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 21 NVAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQAFQ 59
N +Q + I+ DA + K K I + T++P AF+
Sbjct: 129 NDLEQLLLLRIRLGDAYLKLGKAEKAILTVRTSIPLAFK 167
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 23.8 bits (49), Expect = 2.8
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 11 FSTEALKVVNNVAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQAFQ 59
++ + L V NN +Q+ + G+ A+I + I L P+A Q
Sbjct: 432 YNEQVLPVTNNEGRQENGNILLGKAAIIHTTQGDISIKLYPEEAPKAVQ 480
>SPAC8C9.05 |||D-Tyr-tRNA deacylase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 149
Score = 23.4 bits (48), Expect = 3.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 19 VNNVAKQQFAVSIKGEDAVISYEK 42
VN AK F S+KG +A+ YE+
Sbjct: 85 VNKGAKPDFHRSMKGPEAIELYEQ 108
>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 284
Score = 23.4 bits (48), Expect = 3.7
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 12 STEALKVVNNVAKQQFAVSIKGEDAVISYEKKGKGITLIH 51
+ E +K+ + KQ E V+++++ +GI L+H
Sbjct: 227 ANEIVKMRASFRKQNHIEGKGDESVVLAFDEGSRGIQLVH 266
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 23.4 bits (48), Expect = 3.7
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 43 KGKGITLIHTNVPQAFQGKGVGKLLAQVI 71
K KG+ L+H N+ A G+ ++L+Q I
Sbjct: 259 KPKGVVLLHRNIIAAL--GGINRILSQHI 285
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 22.6 bits (46), Expect = 6.5
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 12 STEALKVVNNVAKQQFAVSIKGEDAVISYEKKGKGITLIH 51
S E L ++ +Q ++ K ED + S +K G+ + ++H
Sbjct: 555 SVEVLTEDKHLQVKQTKLTQKLEDLIESVQKSGEKLMIMH 594
>SPAC29E6.05c ||SPAC30.09c|peptide methionine sulfoxide reductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 170
Score = 22.6 bits (46), Expect = 6.5
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 17 KVVNNVAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQAFQGKGVGKLLAQVIF 72
+V N A+ I+ ++ + SY+K + +H QG +G IF
Sbjct: 47 EVCTNTTNHAEALKIEFDEKLTSYDKIIEFFFAMHDPTTSNQQGNDIGTQYRSAIF 102
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 22.2 bits (45), Expect = 8.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 50 IHTNVPQAFQGKGVGKLLAQ 69
+H+ P+ FQ +G G LL +
Sbjct: 482 VHSRDPKKFQHQGFGTLLLE 501
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 22.2 bits (45), Expect = 8.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 19 VNNVAKQQFAVSIKGEDAVIS 39
+NN QQFA+S E +++
Sbjct: 346 INNTLTQQFALSAPYESCIVT 366
>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 300
Score = 22.2 bits (45), Expect = 8.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 55 PQAFQGKGVGKLLAQVIF 72
P AF+G+GV ++LA F
Sbjct: 152 PAAFKGRGVFRILADEKF 169
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.132 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,377
Number of Sequences: 5004
Number of extensions: 7552
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 10
length of query: 72
length of database: 2,362,478
effective HSP length: 52
effective length of query: 20
effective length of database: 2,102,270
effective search space: 42045400
effective search space used: 42045400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)
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