GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002468-TA|BGIBMGA002468-PA|undefined
         (72 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1550 + 27641099-27641288,27641433-27641646,27641738-276418...    29   0.61 
09_03_0170 - 13035371-13036504                                         27   1.8  
12_02_0680 + 21903520-21904093,21904474-21905162                       25   5.6  
10_05_0036 + 8443957-8444112,8446063-8446129,8446685-8446743,844...    25   7.5  
07_01_0635 + 4753919-4754090,4754200-4754258,4754377-4754432,475...    25   9.9  
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531...    25   9.9  

>07_03_1550 +
           27641099-27641288,27641433-27641646,27641738-27641843,
           27642213-27642257,27642275-27642540,27642980-27642991,
           27643201-27643480,27643716-27643823,27644276-27644362,
           27644448-27644552,27644995-27645125,27645249-27645309
          Length = 534

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 11  FSTEALKVVNNVAKQQFAVSIK----GEDAVISYEKKGKGITLIHTNVPQAFQGK 61
           F+TEA+ VV+N   Q   + +K    GE++V+  E KG    + HT   Q  QG+
Sbjct: 289 FNTEAVDVVSNPKGQMSGIQLKRTDTGEESVL--EVKGLFYGIGHTPNSQLLQGQ 341


>09_03_0170 - 13035371-13036504
          Length = 377

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 30  SIKGEDAVISYEKKGKGITLIHTNVPQAFQGKGVGKLLAQVIF 72
           S +GE  V++ E++GK + L+  N  Q+ + + V  L +Q +F
Sbjct: 241 SNQGELMVVAIERRGKKVHLVKLN-EQSMEWEKVDSLHSQTVF 282


>12_02_0680 + 21903520-21904093,21904474-21905162
          Length = 420

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 12  STEALKVVNNVAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQAFQG 60
           +T+A+ +  ++A +  AV ++    VI   K+G G  L+ T+  + F G
Sbjct: 161 ATKAVAMFQSLAAKNGAV-LRDRTEVIDIAKQGDGSILVKTSSGEEFHG 208


>10_05_0036 +
           8443957-8444112,8446063-8446129,8446685-8446743,
           8446855-8446930,8447118-8447189,8447326-8447413,
           8447489-8447744,8447934-8448049,8448247-8448470,
           8448685-8448716,8448882-8449018,8449200-8449289,
           8449383-8449557
          Length = 515

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 47  ITLIHTNVPQAFQGKGVGKLLAQVI 71
           +TL H ++PQA + K  G L  Q+I
Sbjct: 149 VTLYHWDLPQALEDKYTGWLDRQII 173


>07_01_0635 +
           4753919-4754090,4754200-4754258,4754377-4754432,
           4754698-4754842,4755506-4755580,4755844-4755933,
           4756218-4756295,4757879-4758376,4758512-4758997
          Length = 552

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 12  STEALKVVNNVAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQAFQGKGVG 64
           ++EAL    ++       ++KG    + Y  K KGIT + +      QG GVG
Sbjct: 119 TSEALSRYYDITVGSGLKAVKGSRVAVHYVAKWKGITFMTSR-----QGLGVG 166


>06_03_0999 -
           26752410-26752523,26752601-26752830,26752914-26753169,
           26753763-26753828,26753921-26754046,26754148-26754288,
           26754377-26754387,26754523-26754670,26755326-26755454,
           26755573-26755710,26755808-26755876,26755955-26756023,
           26756565-26756720,26756885-26756985,26757068-26757215,
           26757540-26757702,26757833-26757965,26758049-26758226,
           26758330-26758572,26758664-26758732,26759063-26759187,
           26759727-26759766,26760756-26760812,26762831-26762935
          Length = 1004

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 22  VAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQAFQGKGVGK 65
           + + +F+   K  DAV+S E +GK   L+     Q F  KG+ K
Sbjct: 395 IFRSKFSKWPKKADAVVSDESRGKVAALLKR---QGFNVKGLAK 435


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.132    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,626,695
Number of Sequences: 37544
Number of extensions: 48047
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 6
length of query: 72
length of database: 14,793,348
effective HSP length: 52
effective length of query: 20
effective length of database: 12,841,060
effective search space: 256821200
effective search space used: 256821200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)