GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002468-TA|BGIBMGA002468-PA|undefined
         (72 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)                29   0.54 
SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11)                  26   5.1  
SB_23732| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.1  
SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.1  
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.7  
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)                   25   8.8  
SB_15835| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  
SB_8811| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.8  

>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
          Length = 3809

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 36   AVISYEKKGKGITLIHTNVPQA 57
            A I+YEKKG+G  ++  N PQ+
Sbjct: 3594 ATINYEKKGRGCVMVTFNSPQS 3615


>SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11)
          Length = 256

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 29 VSIKGEDAVISYEKKGKGITLIHTNVPQAFQGKGVG 64
          VS++G    +SYE  G+G++        +F+G G G
Sbjct: 50 VSLEGMGEGVSYEGMGEGVSYEGMGEGVSFEGMGKG 85



 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 29 VSIKGEDAVISYEKKGKGITLIHTNVPQAFQGKGVG 64
          VS++G    +S+E  GKG++L       + +G G G
Sbjct: 14 VSLEGMGKGVSFEGMGKGVSLQGMGEGVSLEGMGEG 49


>SB_23732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 7  RARAFSTEALKVVNNVAKQQFAVSIKGEDAVI 38
          RA AF   A+ ++ N+A   FAV I  + A++
Sbjct: 52 RAPAFHIPAMVLLGNLALSDFAVGIIAQPAIL 83


>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 6   TRARAFSTEALKVVNNVAKQQFAVSIKGEDAVISYEKKGKG 46
           TR     ++  + + N +K++ + SI  E  V+S + K KG
Sbjct: 84  TRQLVSKSDKGQTIRNTSKRKASKSIPEESTVVSKKSKAKG 124


>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 32  KGEDAVISYEKKGKGITLIHTNVPQAFQGKGVGKL 66
           K +  ++  + KG+ ++L   ++P AF+ KG  KL
Sbjct: 535 KDQLELVIVKTKGENLSLSTRSLPSAFRNKGFKKL 569


>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
          Length = 3083

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 1    MSGMLTRARAFSTEALKVVNNVAKQQFAVSIKGEDAVI 38
            MSG + +++A     +++ + +AK  F   + G+D VI
Sbjct: 1882 MSGNIKKSQAVVNNNMRIFDIIAKAVFNKHLPGQDDVI 1919


>SB_15835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 24 KQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQAF 58
          K+ F  +  G DAVI+  K  K I ++  N+ +AF
Sbjct: 60 KRNFVYNWNGIDAVITEHKGIKQIVVVSGNLVKAF 94


>SB_8811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 569

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 5   LTRARAFSTEALKVVNNVAKQQFAVSIKGED 35
           L + ++   + +K ++N+ KQQF+ SI  ED
Sbjct: 181 LAKVKSDQEDLVKELSNLRKQQFSRSISIED 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.132    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,130
Number of Sequences: 59808
Number of extensions: 53494
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 19
length of query: 72
length of database: 16,821,457
effective HSP length: 50
effective length of query: 22
effective length of database: 13,831,057
effective search space: 304283254
effective search space used: 304283254
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)