GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002468-TA|BGIBMGA002468-PA|undefined
         (72 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC029527-1|AAH29527.1|  113|Homo sapiens transcript expressed du...    42   3e-04
BC067788-1|AAH67788.1|  292|Homo sapiens 5'-nucleotidase, cytoso...    28   5.3  
BC016971-1|AAH16971.2|  292|Homo sapiens 5'-nucleotidase, cytoso...    28   5.3  
BC014132-1|AAH14132.2|  292|Homo sapiens 5'-nucleotidase, cytoso...    28   5.3  
BC013742-1|AAH13742.2|  292|Homo sapiens 5'-nucleotidase, cytoso...    28   5.3  

>BC029527-1|AAH29527.1|  113|Homo sapiens transcript expressed
          during hematopoiesis 2 protein.
          Length = 113

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 16 LKVVNNVAKQQFAVSIKG--EDAVISYEKKGKGIT-LIHTNVPQAFQGKGVGKLLAQ 69
          ++V ++  ++QF V + G  + AV+ YE  GK I  L HT VP A+ G+G+ K LA+
Sbjct: 19 IRVEHDRRRRQFTVRLNGCHDRAVLLYEYVGKRIVDLQHTEVPDAYSGRGIAKHLAK 75


>BC067788-1|AAH67788.1|  292|Homo sapiens 5'-nucleotidase, cytosolic
           III-like protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 22  VAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQAFQGKGVGKLLAQVI 71
           + K Q A  ++  +A++    K    TL H N+P      G+G +L ++I
Sbjct: 110 IQKFQIAQVVRESNAMLREGYKTFFNTLYHNNIPLFIFSAGIGDILEEII 159


>BC016971-1|AAH16971.2|  292|Homo sapiens 5'-nucleotidase, cytosolic
           III-like protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 22  VAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQAFQGKGVGKLLAQVI 71
           + K Q A  ++  +A++    K    TL H N+P      G+G +L ++I
Sbjct: 110 IQKFQIAQVVRESNAMLREGYKTFFNTLYHNNIPLFIFSAGIGDILEEII 159


>BC014132-1|AAH14132.2|  292|Homo sapiens 5'-nucleotidase, cytosolic
           III-like protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 22  VAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQAFQGKGVGKLLAQVI 71
           + K Q A  ++  +A++    K    TL H N+P      G+G +L ++I
Sbjct: 110 IQKFQIAQVVRESNAMLREGYKTFFNTLYHNNIPLFIFSAGIGDILEEII 159


>BC013742-1|AAH13742.2|  292|Homo sapiens 5'-nucleotidase, cytosolic
           III-like protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 22  VAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQAFQGKGVGKLLAQVI 71
           + K Q A  ++  +A++    K    TL H N+P      G+G +L ++I
Sbjct: 110 IQKFQIAQVVRESNAMLREGYKTFFNTLYHNNIPLFIFSAGIGDILEEII 159


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.318    0.132    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,107,611
Number of Sequences: 224733
Number of extensions: 240748
Number of successful extensions: 461
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 5
length of query: 72
length of database: 73,234,838
effective HSP length: 51
effective length of query: 21
effective length of database: 61,773,455
effective search space: 1297242555
effective search space used: 1297242555
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)