GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002468-TA|BGIBMGA002468-PA|undefined
         (72 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT015999-1|AAV36884.1|  143|Drosophila melanogaster RE42714p pro...    33   0.037
AE014296-2763|AAN11735.1|  143|Drosophila melanogaster CG32163-P...    33   0.037
M32311-1|AAA28529.1|  652|Drosophila melanogaster fasciclin I pr...    26   7.3  
M20545-1|AAA28531.1|  652|Drosophila melanogaster protein ( D.me...    26   7.3  
AE014297-2247|AAF55346.2|  649|Drosophila melanogaster CG6588-PA...    26   7.3  
AE014297-2246|AAN13715.1|  652|Drosophila melanogaster CG6588-PB...    26   7.3  
AE014297-2245|AAN13714.1|  655|Drosophila melanogaster CG6588-PC...    26   7.3  

>BT015999-1|AAV36884.1|  143|Drosophila melanogaster RE42714p
           protein.
          Length = 143

 Score = 33.5 bits (73), Expect = 0.037
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 6   TRARAFSTEALKVVNNVAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQAFQGKGVGK 65
           ++ R F T    +V    + +F   I    AV+ Y  +   +T+  TNVP+   G G+GK
Sbjct: 46  SQERCFGTH---IVVRHKRGRFYTDIGELRAVLVYSIRDGVMTINSTNVPEELGGHGIGK 102

Query: 66  LLAQ 69
           LLA+
Sbjct: 103 LLAK 106


>AE014296-2763|AAN11735.1|  143|Drosophila melanogaster CG32163-PA
           protein.
          Length = 143

 Score = 33.5 bits (73), Expect = 0.037
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 6   TRARAFSTEALKVVNNVAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQAFQGKGVGK 65
           ++ R F T    +V    + +F   I    AV+ Y  +   +T+  TNVP+   G G+GK
Sbjct: 46  SQERCFGTH---IVVRHKRGRFYTDIGELRAVLVYSIRDGVMTINSTNVPEELGGHGIGK 102

Query: 66  LLAQ 69
           LLA+
Sbjct: 103 LLAK 106


>M32311-1|AAA28529.1|  652|Drosophila melanogaster fasciclin I
           protein.
          Length = 652

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 19  VNNVAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQ 56
           VNN     F V  +G D VI+ E  G   T+I  +V Q
Sbjct: 414 VNNNTFLYFNVRGEGSDTVITVEGGGVNATVIQADVAQ 451


>M20545-1|AAA28531.1|  652|Drosophila melanogaster protein (
           D.melanogaster fasciclinI mRNA, complete cds. ).
          Length = 652

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 19  VNNVAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQ 56
           VNN     F V  +G D VI+ E  G   T+I  +V Q
Sbjct: 414 VNNNTFLYFNVRGEGSDTVITVEGGGVNATVIQADVAQ 451


>AE014297-2247|AAF55346.2|  649|Drosophila melanogaster CG6588-PA,
           isoform A protein.
          Length = 649

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 19  VNNVAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQ 56
           VNN     F V  +G D VI+ E  G   T+I  +V Q
Sbjct: 411 VNNNTFLYFNVRGEGSDTVITVEGGGVNATVIQADVAQ 448


>AE014297-2246|AAN13715.1|  652|Drosophila melanogaster CG6588-PB,
           isoform B protein.
          Length = 652

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 19  VNNVAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQ 56
           VNN     F V  +G D VI+ E  G   T+I  +V Q
Sbjct: 414 VNNNTFLYFNVRGEGSDTVITVEGGGVNATVIQADVAQ 451


>AE014297-2245|AAN13714.1|  655|Drosophila melanogaster CG6588-PC,
           isoform C protein.
          Length = 655

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 19  VNNVAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQ 56
           VNN     F V  +G D VI+ E  G   T+I  +V Q
Sbjct: 417 VNNNTFLYFNVRGEGSDTVITVEGGGVNATVIQADVAQ 454


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.318    0.132    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,631
Number of Sequences: 52641
Number of extensions: 82669
Number of successful extensions: 232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 7
length of query: 72
length of database: 24,830,863
effective HSP length: 52
effective length of query: 20
effective length of database: 22,093,531
effective search space: 441870620
effective search space used: 441870620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)