GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002468-TA|BGIBMGA002468-PA|undefined
         (72 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-1|AAC48292.3|  731|Caenorhabditis elegans Hypothetical pr...    28   0.69 
Z29117-16|CAE17732.1|  100|Caenorhabditis elegans Hypothetical p...    27   1.6  
Z22176-13|CAE18056.1|  100|Caenorhabditis elegans Hypothetical p...    27   1.6  
Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical pr...    26   3.7  
AC024842-3|AAP13732.1| 1111|Caenorhabditis elegans Hypothetical ...    26   3.7  
AC024842-1|AAF59622.4| 1127|Caenorhabditis elegans Hypothetical ...    26   3.7  
Z82054-2|CAB04841.1|  501|Caenorhabditis elegans Hypothetical pr...    25   8.5  
U00044-7|AAA50675.1|  990|Caenorhabditis elegans Hypothetical pr...    25   8.5  

>U00033-1|AAC48292.3|  731|Caenorhabditis elegans Hypothetical
           protein F37C12.7 protein.
          Length = 731

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)

Query: 1   MSGMLTRARAFSTEALKVVNNVAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQAFQG 60
           +SG+LTR +    E+  V +++A   +     G+          KG+ L+H NV  A  G
Sbjct: 269 LSGLLTRNQEQVKESTAVKSDIALIMYTSGTTGQP---------KGVILLHQNVVAALLG 319

Query: 61  KGVG 64
           +G G
Sbjct: 320 QGDG 323


>Z29117-16|CAE17732.1|  100|Caenorhabditis elegans Hypothetical
          protein ZK1098.11 protein.
          Length = 100

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 33 GEDAVISY-EKKGKGITLIHTNVPQAFQGKGVGKLLAQ 69
          G  A + Y E   + +   HT  P+  QGKGV K+L +
Sbjct: 21 GSKAYLEYAELPNRVLDFQHTVTPEDQQGKGVAKILVK 58


>Z22176-13|CAE18056.1|  100|Caenorhabditis elegans Hypothetical
          protein ZK1098.11 protein.
          Length = 100

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 33 GEDAVISY-EKKGKGITLIHTNVPQAFQGKGVGKLLAQ 69
          G  A + Y E   + +   HT  P+  QGKGV K+L +
Sbjct: 21 GSKAYLEYAELPNRVLDFQHTVTPEDQQGKGVAKILVK 58


>Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical
           protein C45G3.1 protein.
          Length = 1186

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 14  EALKVVNNVAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQAFQ 59
           E  + + N+ +   AV   GED+  S    G  + ++H +  Q F+
Sbjct: 892 EIARKLGNIERNALAVRDGGEDSSDSRSDAGHDVAILHGDDSQLFE 937


>AC024842-3|AAP13732.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y59H11AR.2b protein.
          Length = 1111

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 4   MLTRARAFSTEALKVVNNVAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQA--FQGK 61
           +L        E++    ++   + A+S  G + + S +K GK I    T V Q   ++G+
Sbjct: 298 VLLNGTCIVNESMLTGESIPITKSAISDDGHEKIFSIDKHGKNIIFNGTKVLQTKYYKGQ 357

Query: 62  GVGKLLAQVIF 72
            V  L+ +  +
Sbjct: 358 NVKALVIRTAY 368


>AC024842-1|AAF59622.4| 1127|Caenorhabditis elegans Hypothetical
           protein Y59H11AR.2a protein.
          Length = 1127

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 4   MLTRARAFSTEALKVVNNVAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQA--FQGK 61
           +L        E++    ++   + A+S  G + + S +K GK I    T V Q   ++G+
Sbjct: 314 VLLNGTCIVNESMLTGESIPITKSAISDDGHEKIFSIDKHGKNIIFNGTKVLQTKYYKGQ 373

Query: 62  GVGKLLAQVIF 72
            V  L+ +  +
Sbjct: 374 NVKALVIRTAY 384


>Z82054-2|CAB04841.1|  501|Caenorhabditis elegans Hypothetical
           protein T26F2.2 protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 17  KVVNNVAKQQFAVSIKGEDAVISYEK-KGKGITLIHTNVPQAFQ 59
           K+++ +     A+S+K  D  ISYE  K +    IH +  + F+
Sbjct: 457 KIMSKLPDDDQAISVKIADGEISYENAKAEDWNFIHPSFLEYFE 500


>U00044-7|AAA50675.1|  990|Caenorhabditis elegans Hypothetical
           protein K04C2.2 protein.
          Length = 990

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 6   TRARAFSTEALKVVNNVAKQQFAVSIKGEDAVISYEK 42
           TRA  F++  +   N    +Q  V+++GE+ V   EK
Sbjct: 437 TRAGEFASIQISEKNEEVLRQLVVAVQGEEEVKKAEK 473


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.132    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,341,802
Number of Sequences: 27539
Number of extensions: 38808
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 8
length of query: 72
length of database: 12,573,161
effective HSP length: 52
effective length of query: 20
effective length of database: 11,141,133
effective search space: 222822660
effective search space used: 222822660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)