GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002467-TA|BGIBMGA002467-PA|undefined
         (246 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   1.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   1.6  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   5.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.8  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax
          protein.
          Length = 209

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 49 DNARRKQKQHDKNGNGGSTEDLRGDDVLSGRSTPLARP 86
          D  +  +     NG+GG+  +        G STP  RP
Sbjct: 37 DGGKPPELTGSTNGDGGARSNADSTSHTDGASTPDVRP 74


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 49  DNARRKQKQHDKNGNGGSTEDLRGDDVLSGRSTPLARP 86
           D  +  +     NG+GG+  +        G STP  RP
Sbjct: 193 DGGKPPELTGSTNGDGGARSNADSTSHTDGASTPDVRP 230


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 168 AGLPKAVTKQT--VILTYQSQQYAPQAGQTKADATGVRATPPKT 209
           A L K +T     ++ +Y  ++Y P A     DA    ATP  T
Sbjct: 273 ARLRKQITSAATPLVRSYAPERYPPLAQGVNDDAFNSVATPTPT 316


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 122 AFEAPNDKDTALNNNALDKKITSNY 146
           A    +  D  + NN LDKK  S Y
Sbjct: 400 ALPKTDSSDNRILNNLLDKKPYSTY 424


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 122 AFEAPNDKDTALNNNALDKKITSNY 146
           A    +  D  + NN LDKK  S Y
Sbjct: 292 ALPKTDSSDNRILNNLLDKKPYSTY 316


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 49  DNARRKQKQHDKNGNGGSTEDLRGDDVLSGRSTPLARPRKETAGQPLRTNRFG 101
           D+ RR +   +K+G   S       D LSG+S   A    E + +  + N  G
Sbjct: 145 DHLRRLEMSLEKSGLFSSKTSEHSVDELSGKSDNDAEEYDEQSLRVPKVNSHG 197


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.125    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,553
Number of Sequences: 317
Number of extensions: 2276
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 246
length of database: 114,650
effective HSP length: 55
effective length of query: 191
effective length of database: 97,215
effective search space: 18568065
effective search space used: 18568065
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 42 (21.0 bits)