Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002467-TA|BGIBMGA002467-PA|undefined
(246 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 31 0.21
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 29 0.63
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 29 0.63
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 29 0.83
SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr ... 29 0.83
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 28 1.1
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 28 1.1
SPBC2D10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 1.9
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 27 1.9
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 27 3.3
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 27 3.3
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 26 4.4
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 26 5.8
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 25 7.7
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 7.7
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 7.7
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 30.7 bits (66), Expect = 0.21
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 173 AVTKQTVILTYQSQQYAPQAGQTKADATGVR--ATPPKTQPPGKYTFQTNQL-PRPQYPA 229
A+ +Q V YQ PQA + TG+R AT TQP G +T T + P P
Sbjct: 1125 AMPQQPVNYGYQVAGMQPQATGIISQPTGIRAQATGIMTQPTGLHTQATGMMQPTGMQPQ 1184
Query: 230 VKNIDAKAT 238
I +AT
Sbjct: 1185 ATGIMPQAT 1193
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 29.1 bits (62), Expect = 0.63
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 192 AGQTKADATGVRATPPKTQPPGKYTFQTNQLPRPQYPAVKNIDA 235
A T + A+ P QPP T Q N P P P+ +DA
Sbjct: 298 ASYTSMNMKQSSASHPVLQPPAPSTLQFNPSPSPAAPSYPPVDA 341
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 29.1 bits (62), Expect = 0.63
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 2 RQSGHSESKGAKKRDKSASGNGNSKLTRGVATSF-GFRRRPA 42
RQ+ S S G R+ S S N N+K ++ V +F G+ ++P+
Sbjct: 638 RQTHRSVSSGEVSRESSESRNTNAKASKRVYITFTGYDKKPS 679
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 28.7 bits (61), Expect = 0.83
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 12 AKKRDKSA-SGNGNSKLTRGVATSFGFRRRPASTSRADDNARRKQKQHDKNGNGGST--E 68
++ RD+S+ S +R + R P +SR + RR +++ ++ E
Sbjct: 148 SRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRRRYEERSSRSSRAHDYDYE 207
Query: 69 DLRGDDVLSGRSTPLARPRKETA 91
DLR DD R +RPR+ ++
Sbjct: 208 DLRDDDRSHERKRSRSRPRERSS 230
>SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 28.7 bits (61), Expect = 0.83
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 148 QLPLVATQVSSGGVTNIVGAAGLPKAVTKQTVILTYQSQQYAPQA 192
+L + + + + N +GA GL QTV L + Y PQ+
Sbjct: 100 ELKIPVRMIHNASIMNAIGACGLQLYKFGQTVSLVFFENNYRPQS 144
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 9 SKGAKKRDKSASGNGNSKLTRGVATSFGFRRRPASTSRADDNARRKQKQHDKNGNGGSTE 68
SK + K N S + ++ FRR A S +DD+ ++ H K N + +
Sbjct: 159 SKSSHKPVNVIVRNRASSRKPPLTSTHRFRRYGAVISDSDDDESNTEQDHSKESNLNTAD 218
Query: 69 -DLRGDDVLSGRSTPLARPRKET 90
DL + G+ T ++ E+
Sbjct: 219 NDLALSSTIEGKKTSTSKEALES 241
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 57 QHDKNGNGGSTEDLRGDDVLSGR--STPLARPRKETAGQPLRTNRFGFRQSHAKTAKV 112
QHD+N + D+ D +L + ST A R +A +P +++ S +T KV
Sbjct: 155 QHDENDDASDNSDVEEDPILEHKSISTKGACNRVRSARRPANSSKESLLASFHETGKV 212
>SPBC2D10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 105
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 88 KETAGQPLRTNRFGFRQSHAKTAKVGDLTLAAEQAFEAPNDKDTALNNNALDK 140
K+T + LR ++ ++ K + D+ + + A + KD +LN N K
Sbjct: 26 KKTIKKQLRNGKYSLKRLAEKGIHLDDIAMEIDNASKKNISKDKSLNENLFGK 78
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 38 RRRPASTSRADDNARRKQKQHDKNGNGGSTEDLRGDDVLSGRSTPLARPRKET 90
R P T++ D+ R++K H+ NG L ++L G ST A + T
Sbjct: 42 RYLPNYTNKGDEEVTRRKKLHEPNGPKFHELPL-NQNILDGLSTNFAEYKNST 93
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 26.6 bits (56), Expect = 3.3
Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 13/143 (9%)
Query: 31 VATSFGFRRRPASTSRADDNARRKQKQHDKNGNGGSTEDLRGD-DVLSGRSTPLARPRKE 89
+ +FG +P S++D ++ + NG E + G DV P + +
Sbjct: 975 MTNAFGTTTKPKDVSQSDIKVDINRESNSDNG-----ETITGTHDVYRQTDNPEIKLPSD 1029
Query: 90 TAGQPLRTNRFGFRQSHAKTAKVGDLT----LAAEQAFEAPNDKDTALNNNALDK--KIT 143
TA + T+ Q T + L E P+ + +++ DK K +
Sbjct: 1030 TASSKVDTHNPTVTQPTDDTGGLNSYNTENPLLTNNTLE-PSSVEAIVSSKDSDKHAKES 1088
Query: 144 SNYHQLPLVATQVSSGGVTNIVG 166
PL++++VS+ TN+ G
Sbjct: 1089 KGKSLAPLISSRVSTNDTTNVAG 1111
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 192 AGQTKADATG-VRATPPKTQPPGKY-TFQTNQLPRPQYPAVKN 232
A Q A +T + +T P PP Y Q +Q P PQ P V N
Sbjct: 176 ASQNPAISTSNLPSTTPLYIPPVNYGANQVSQQPNPQLPGVSN 218
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 38 RRRPASTSRADDNARRKQKQHDKNGNGGSTEDLRG-DDVLSGRSTPLARPRKETAGQPL 95
RRR A S + + K+KQ DK+ + D D++ G+ P E P+
Sbjct: 260 RRRSAQNSAKLEKEKAKEKQKDKDQEQDTVSDKNQIDEIEKGQKEVDEEPVSEPTTSPI 318
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 32 ATSFGFRRRPAST-SRADDNARRKQKQHDKNGNGGSTEDLRGDDVLSGRSTPLAR 85
A++ F++ ST SR N +R QK+++K G GG + +D+ S +T R
Sbjct: 258 ASADTFKKGSRSTKSRPQPNPKR-QKKNEKYGFGGPKHRSKSNDLDSLAATEFGR 311
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 43 STSRADDNARRKQKQHDKNGNGGSTEDLRGDDVLSGRSTPLARPRKETAGQPL 95
S+ R D AR +++Q +N N S ++ + +G ST +KE P+
Sbjct: 25 SSRRWTDRARDRKRQ-KRNSNESSKSTVKRNSGTNGASTDYKNSQKEKVINPV 76
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 7.7
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 6 HSESKGAKKRDKSASGNGNS--KLTRGVATSFGFRRRPASTSRADDNAR 52
H +GA+K D S NG S KL R V ++ + + + DD+ R
Sbjct: 89 HVNGEGAEKGDHDTSNNGPSITKLRRKVRRTYDTKDGFVAWNTLDDDFR 137
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/36 (25%), Positives = 22/36 (61%)
Query: 126 PNDKDTALNNNALDKKITSNYHQLPLVATQVSSGGV 161
P+ D +++ ++D+KI ++Y LP + + ++ V
Sbjct: 336 PSQNDISVSQISVDEKICTSYESLPKIQLEQNTAPV 371
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.125 0.351
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,083,989
Number of Sequences: 5004
Number of extensions: 44477
Number of successful extensions: 115
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 17
length of query: 246
length of database: 2,362,478
effective HSP length: 71
effective length of query: 175
effective length of database: 2,007,194
effective search space: 351258950
effective search space used: 351258950
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 53 (25.4 bits)
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