GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002467-TA|BGIBMGA002467-PA|undefined
         (246 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    31   0.007
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    30   0.023
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             29   0.052
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.85 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.0  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 116 TLAAEQAFEAPNDKDTALNNNALDKKITSNYHQLPLVATQVSSGGVTNIVGAAGLPKAVT 175
           TLAA Q      DKD  + +  L+     NY     +    +S G+++    +G PK V 
Sbjct: 12  TLAAPQRPSGGADKDAVITSQQLEVNFDGNY-----INNFETSNGISH--QESGQPKQVD 64

Query: 176 KQTVILTYQSQQYAPQAGQ 194
            +T +++  S  Y    GQ
Sbjct: 65  NETPVVSQGSDSYTAPDGQ 83


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 29.9 bits (64), Expect = 0.023
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 53 RKQKQHDKNGNGGSTEDLRGDDVLSGRSTPLARPRKETAGQPLRTNR 99
          R+ K+ D  GNGG+ E+ R     SG    LAR ++E A     T R
Sbjct: 4  RRVKRSDGRGNGGTPEEKRPRTAFSGEQ--LARLKREFAENRYLTER 48


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 28.7 bits (61), Expect = 0.052
 Identities = 19/70 (27%), Positives = 29/70 (41%)

Query: 18  SASGNGNSKLTRGVATSFGFRRRPASTSRADDNARRKQKQHDKNGNGGSTEDLRGDDVLS 77
           SA+G G +  +  VATS         T+       RK++Q+D  G     +D   ++   
Sbjct: 232 SATGTGPATPSAVVATSNATAAMTTGTTTIPTRRLRKRRQNDGEGADDRDDDEENEEEED 291

Query: 78  GRSTPLARPR 87
           GR    A  R
Sbjct: 292 GRGQSEAEKR 301


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 16/79 (20%), Positives = 32/79 (40%)

Query: 20  SGNGNSKLTRGVATSFGFRRRPASTSRADDNARRKQKQHDKNGNGGSTEDLRGDDVLSGR 79
           S  G+  L +   +++   R PA++        R+Q+Q  +       +     D L   
Sbjct: 761 SPQGSQGLLQCATSNYSTTRWPATSVITTTTGARQQQQQQQQQQQQQQQQQSSSDYLMVG 820

Query: 80  STPLARPRKETAGQPLRTN 98
           ++P + PR  +A     T+
Sbjct: 821 NSPASSPRYLSAAATSSTS 839


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 6   HSESKGAKKRDKSASGNGNSKLTRGVATSFGFRR-RPASTSRADDNARRKQKQHDKNGNG 64
           H+++ G +  D   + N N+        +   +     + +R +DN +   +Q+D   NG
Sbjct: 423 HNQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNG 482

Query: 65  GSTED 69
               D
Sbjct: 483 NRQND 487


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 190 PQAGQTKADATGVRATPPKTQPPGKYTFQTNQLPRPQYPAVKNID 234
           P  G  +         P +T P  K + +  +   P+Y +V  ID
Sbjct: 380 PAMGHWQMSCVACSPPPRQTPPSRKESGRRRRRRTPRYNSVSKID 424


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.125    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,221
Number of Sequences: 429
Number of extensions: 3186
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 246
length of database: 140,377
effective HSP length: 56
effective length of query: 190
effective length of database: 116,353
effective search space: 22107070
effective search space used: 22107070
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 43 (21.4 bits)