GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002466-TA|BGIBMGA002466-PA|undefined
         (55 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    22   8.5  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    22   8.5  

>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 226

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 19 GYGVCEVIVHHEVVRGEARQRVQGWSPFSAAISK 52
          G  +  +++HHE+   +  QRV    P    I K
Sbjct: 58 GIAIRGLVLHHEIDAVDYDQRVDQSLPLEKVIKK 91


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 6   DLPLYVVIDALKAGYGVCEVIVHHE 30
           + P+Y+ + + K G+  C++ V  E
Sbjct: 463 EFPIYLDLKSYKLGFHWCDIYVDSE 487


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.133    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,820
Number of Sequences: 5004
Number of extensions: 5112
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 55
length of database: 2,362,478
effective HSP length: 36
effective length of query: 19
effective length of database: 2,182,334
effective search space: 41464346
effective search space used: 41464346
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)