GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002466-TA|BGIBMGA002466-PA|undefined
         (55 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0410 - 23223701-23223714,23223863-23225159,23225314-232262...    27   1.4  
09_03_0066 - 12026714-12027211,12027783-12028103                       26   3.2  
09_06_0002 + 20121846-20123308,20123420-20123426                       25   5.6  
04_04_1523 - 34148407-34150224                                         25   9.8  

>11_06_0410 -
           23223701-23223714,23223863-23225159,23225314-23226225,
           23226952-23227023,23227323-23227471,23227879-23227912
          Length = 825

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 10  YVVIDALKAGYGVCEVIVHHEVVRGEARQRVQGWSPFSAAISKSTN 55
           YV+++   A YG   +++H           + GW  FS  + ++ N
Sbjct: 464 YVIVNT-PARYGERTIVIHQHAFLQTFSSSISGWKIFSCILERNQN 508


>09_03_0066 - 12026714-12027211,12027783-12028103
          Length = 272

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 7  LPLYVVIDALKAGYGVCEVIVHHEVVRGEARQRVQGWSPFSA 48
          L LYV I A+ AG  + EV+V  EVV    +  V G    SA
Sbjct: 17 LLLYVTISAV-AGQSITEVVVGDEVVHAVTKLVVGGGGVDSA 57


>09_06_0002 + 20121846-20123308,20123420-20123426
          Length = 489

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 17  KAGYGVCEVIVHHEVVRGEARQRVQGWSPFSAAISKS 53
           +AGYGVCE +V   V  G      +G+S     +SK+
Sbjct: 85  RAGYGVCEAVV-EGVKLGARIVSDRGFSALCIIVSKA 120


>04_04_1523 - 34148407-34150224
          Length = 605

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 30  EVVRGEARQRVQGWSPFSAAISK 52
           EVV  EAR+++  W P+S  I +
Sbjct: 432 EVVCMEARRKLAEWEPYSPVIEQ 454


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.133    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,372
Number of Sequences: 37544
Number of extensions: 36667
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 4
length of query: 55
length of database: 14,793,348
effective HSP length: 36
effective length of query: 19
effective length of database: 13,441,764
effective search space: 255393516
effective search space used: 255393516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)