Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002466-TA|BGIBMGA002466-PA|undefined
(55 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41995-11|AAA83467.1| 665|Caenorhabditis elegans Hypothetical p... 27 1.6
U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical pr... 26 3.7
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 26 3.7
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 26 3.7
AF106579-3|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 26 3.7
AF106579-2|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 26 3.7
AF106579-1|AAC78200.4| 4889|Caenorhabditis elegans Kettin (droso... 26 3.7
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 26 3.7
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr... 25 4.8
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr... 25 4.8
>U41995-11|AAA83467.1| 665|Caenorhabditis elegans Hypothetical
protein E02C12.10 protein.
Length = 665
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 5 NDLPLYVVIDALKAGYGVCEVIVHHEV-VRGEARQRVQGWSPFSAAIS 51
NDL ++++D ++ G+ +C ++ +GE R QG+ A I+
Sbjct: 564 NDLKGFLIVDYVENGHVICTSAAEEKLHFKGETTLRWQGYMSIIALIN 611
>U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical
protein R02F2.2 protein.
Length = 1182
Score = 25.8 bits (54), Expect = 3.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 17 KAGYGVCEVIVHHEVVRGEARQRVQGW 43
K Y + E++ HH+V+ QR+ W
Sbjct: 403 KIFYRIPEILAHHQVLLTTLSQRIDQW 429
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 15 ALKAGYGVCEVIVHHEVVRGEARQRVQGWSPFSAAISKST 54
A++ +G+C + V + E +++ W+P A+S +T
Sbjct: 2461 AIQQDFGICTLDVAYTYPEDEGVYQLRIWNPEGEAVSSAT 2500
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform b protein.
Length = 4203
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 15 ALKAGYGVCEVIVHHEVVRGEARQRVQGWSPFSAAISKST 54
A++ +G+C + V + E +++ W+P A+S +T
Sbjct: 2378 AIQQDFGICTLDVAYTYPEDEGVYQLRIWNPEGEAVSSAT 2417
>AF106579-3|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform d protein.
Length = 4369
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 15 ALKAGYGVCEVIVHHEVVRGEARQRVQGWSPFSAAISKST 54
A++ +G+C + V + E +++ W+P A+S +T
Sbjct: 2699 AIQQDFGICTLDVAYTYPEDEGVYQLRIWNPEGEAVSSAT 2738
>AF106579-2|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform c protein.
Length = 4447
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 15 ALKAGYGVCEVIVHHEVVRGEARQRVQGWSPFSAAISKST 54
A++ +G+C + V + E +++ W+P A+S +T
Sbjct: 2699 AIQQDFGICTLDVAYTYPEDEGVYQLRIWNPEGEAVSSAT 2738
>AF106579-1|AAC78200.4| 4889|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4889
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 15 ALKAGYGVCEVIVHHEVVRGEARQRVQGWSPFSAAISKST 54
A++ +G+C + V + E +++ W+P A+S +T
Sbjct: 3100 AIQQDFGICTLDVAYTYPEDEGVYQLRIWNPEGEAVSSAT 3139
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 15 ALKAGYGVCEVIVHHEVVRGEARQRVQGWSPFSAAISKST 54
A++ +G+C + V + E +++ W+P A+S +T
Sbjct: 2394 AIQQDFGICTLDVAYTYPEDEGVYQLRIWNPEGEAVSSAT 2433
>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
C23F12.1a protein.
Length = 2329
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 6 DLPLYVVIDALKAGYGVCEVIV 27
D P+Y +DA +AG G EV V
Sbjct: 1253 DKPVYFTVDASEAGVGNLEVAV 1274
>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
C23F12.1b protein.
Length = 2747
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 6 DLPLYVVIDALKAGYGVCEVIV 27
D P+Y +DA +AG G EV V
Sbjct: 1253 DKPVYFTVDASEAGVGNLEVAV 1274
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.133 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,158,966
Number of Sequences: 27539
Number of extensions: 28109
Number of successful extensions: 40
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 12
length of query: 55
length of database: 12,573,161
effective HSP length: 36
effective length of query: 19
effective length of database: 11,581,757
effective search space: 220053383
effective search space used: 220053383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)
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