GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002466-TA|BGIBMGA002466-PA|undefined
         (55 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.13 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   2.1  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    18   8.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 0.13
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 26  IVHHEVVRGEARQRVQGWSPFSAAISKST 54
           I+H+ ++RGEA  R    SP  A    ST
Sbjct: 726 IIHNYIMRGEASPRSPNASPSPAEQCAST 754


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.2 bits (40), Expect = 2.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 6   DLPLYVVIDALKAGYG 21
           D P Y + DA K G G
Sbjct: 551 DEPKYFIFDAEKTGLG 566


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 6/17 (35%), Positives = 12/17 (70%)

Query: 6   DLPLYVVIDALKAGYGV 22
           D  ++V+  ++KAGY +
Sbjct: 251 DKRMFVLAASIKAGYTI 267


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.133    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,506
Number of Sequences: 429
Number of extensions: 296
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 55
length of database: 140,377
effective HSP length: 35
effective length of query: 20
effective length of database: 125,362
effective search space:  2507240
effective search space used:  2507240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.1 bits)
S2: 35 (18.2 bits)