GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002463-TA|BGIBMGA002463-PA|undefined
         (54 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7BJ65 Cluster: BmRelish1; n=2; Bombyx mori|Rep: BmReli...   114   3e-25
UniRef50_Q94527 Cluster: Nuclear factor NF-kappa-B p110 subunit ...    37   0.092
UniRef50_Q3AEJ7 Cluster: Sigma-54 dependent transcriptional regu...    34   0.65 
UniRef50_Q2XW28 Cluster: Relish; n=1; Glossina morsitans morsita...    34   0.65 
UniRef50_UPI0000D5724C Cluster: PREDICTED: similar to CG11992-PA...    31   4.6  

>UniRef50_A7BJ65 Cluster: BmRelish1; n=2; Bombyx mori|Rep: BmRelish1
           - Bombyx mori (Silk moth)
          Length = 937

 Score =  114 bits (275), Expect = 3e-25
 Identities = 51/52 (98%), Positives = 51/52 (98%)

Query: 3   LVNYTGQAVIKCQLAQHKTPEEHPHKLFEEEQDNDGREVSCIVPKQGIYKVG 54
           LVNYTGQAVIKCQLAQHKTPEEHPHKLFEEEQDND REVSCIVPKQGIYKVG
Sbjct: 97  LVNYTGQAVIKCQLAQHKTPEEHPHKLFEEEQDNDDREVSCIVPKQGIYKVG 148


>UniRef50_Q94527 Cluster: Nuclear factor NF-kappa-B p110 subunit
           (Relish protein) (Rel-p110) [Contains: Nuclear factor
           NF-kappa-B p68 subunit (Rel-p68); Nuclear factor
           NF-kappa-B p49 subunit (Rel-p49)]; n=52; Drosophila|Rep:
           Nuclear factor NF-kappa-B p110 subunit (Relish protein)
           (Rel-p110) [Contains: Nuclear factor NF-kappa-B p68
           subunit (Rel-p68); Nuclear factor NF-kappa-B p49 subunit
           (Rel-p49)] - Drosophila melanogaster (Fruit fly)
          Length = 971

 Score = 36.7 bits (81), Expect = 0.092
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 1   MTLVNYTGQAVIKCQLAQHKTPEEHPHKLFEEEQDND 37
           +TL NY G AVI+C L Q      H H+L   + D D
Sbjct: 192 VTLCNYDGPAVIRCSLFQTNLDSPHSHQLVVRKDDRD 228


>UniRef50_Q3AEJ7 Cluster: Sigma-54 dependent transcriptional
           regulator; n=2; Bacteria|Rep: Sigma-54 dependent
           transcriptional regulator - Carboxydothermus
           hydrogenoformans (strain Z-2901 / DSM 6008)
          Length = 672

 Score = 33.9 bits (74), Expect = 0.65
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 3   LVNYTGQAVIKCQLAQHKTPEEHPHKLFEE 32
           L NY G+A++K  LA+++   EH  KLFEE
Sbjct: 580 LENYLGRAMLKVSLAENRLGPEHLPKLFEE 609


>UniRef50_Q2XW28 Cluster: Relish; n=1; Glossina morsitans
           morsitans|Rep: Relish - Glossina morsitans morsitans
           (Savannah tsetse fly)
          Length = 939

 Score = 33.9 bits (74), Expect = 0.65
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 3   LVNYTGQAVIKCQLAQHKTPEEHPHKLFEEEQDND 37
           LV+Y G A+I+C L Q      H H+L   + D+D
Sbjct: 159 LVDYRGPAIIRCSLFQANLESPHSHQLVIRKDDDD 193


>UniRef50_UPI0000D5724C Cluster: PREDICTED: similar to CG11992-PA,
           isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG11992-PA, isoform A - Tribolium castaneum
          Length = 853

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 3/34 (8%)

Query: 3   LVNYTGQAVIKCQLAQHKTPEE---HPHKLFEEE 33
           L N+  +AV++C + Q+ T E+   HPH+L +++
Sbjct: 104 LCNFYKRAVVRCSIYQYNTKEDQKPHPHRLIKKQ 137


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.315    0.134    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,766,143
Number of Sequences: 1657284
Number of extensions: 1966031
Number of successful extensions: 3252
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3248
Number of HSP's gapped (non-prelim): 5
length of query: 54
length of database: 575,637,011
effective HSP length: 34
effective length of query: 20
effective length of database: 519,289,355
effective search space: 10385787100
effective search space used: 10385787100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 65 (30.3 bits)