GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002463-TA|BGIBMGA002463-PA|undefined
         (54 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    23   3.7  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    23   4.9  
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    23   6.4  
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    22   8.5  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    22   8.5  

>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 21  TPEEHPHKLFEEEQDNDGREVSCIV 45
           TPEE   K F ++ ++    + C+V
Sbjct: 378 TPEERKEKAFRKKDEDSAAGLRCLV 402


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)

Query: 24  EHPHKLFEEEQDNDGR 39
           ++P KLFE+++D D +
Sbjct: 262 DNPCKLFEDQEDQDSK 277


>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 270

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 21 TPEEHPHKLFEEEQDNDGREVS 42
          TPE++   L  ++  +DGR VS
Sbjct: 21 TPEQYLSHLLNQDVRSDGRSVS 42


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 24  EHPHKLFEEEQDNDGREV 41
           + P KL +  Q+N GR+V
Sbjct: 170 DSPEKLLQLSQENQGRKV 187


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 12  IKCQLAQHKTPEEHPHKLF 30
           I C +A++ +  EH +KLF
Sbjct: 188 IACTIARYNSAYEHNNKLF 206


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.134    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 279,391
Number of Sequences: 5004
Number of extensions: 8300
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 5
length of query: 54
length of database: 2,362,478
effective HSP length: 35
effective length of query: 19
effective length of database: 2,187,338
effective search space: 41559422
effective search space used: 41559422
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)