GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002463-TA|BGIBMGA002463-PA|undefined
         (54 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0619 - 5102970-5103750,5103825-5104065,5104794-5104797           29   0.60 
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510...    25   5.6  
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842...    25   7.4  
10_08_0055 - 14505747-14506934                                         25   9.8  
05_05_0241 - 23551471-23551591,23551755-23551833,23553140-235533...    25   9.8  

>12_01_0619 - 5102970-5103750,5103825-5104065,5104794-5104797
          Length = 341

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 13  KCQLAQHKTPEEHPHKLFEEEQDNDGREVSCIVPKQ 48
           K  LA+ K   EH   + EEE+DN+ R  + +V ++
Sbjct: 187 KTMLAKEKDKAEHHKNMLEEEKDNNKRLKTMLVEEK 222


>12_01_0618 -
           5099021-5099668,5099701-5100221,5100311-5100352,
           5100905-5100962
          Length = 422

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 12  IKCQLAQHKTPEEHPHKLFEEEQDNDGREVSCIVPKQ 48
           +K  L + K   EH   + EEE+D + R  + +V ++
Sbjct: 335 LKTMLVEEKDKNEHHKTMLEEEKDKNERLNTMLVEEK 371


>08_02_1171 +
           24880363-24881355,24882553-24882702,24883505-24884210,
           24885012-24885404,24885759-24885805,24886088-24886111
          Length = 770

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 16  LAQHKTPEEHPHKLFEEEQD 35
           L +H++P  HPH   + E+D
Sbjct: 131 LLRHQSPHPHPHPAADPERD 150


>10_08_0055 - 14505747-14506934
          Length = 395

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 22  PEEHPHKLFEEEQDND 37
           PE +P +L EEE+D+D
Sbjct: 264 PETNPQELEEEEEDDD 279


>05_05_0241 -
           23551471-23551591,23551755-23551833,23553140-23553334,
           23553466-23553518,23553642-23553742,23553844-23553918,
           23554033-23554272,23554369-23554490,23554582-23554706,
           23554830-23554909,23555064-23555261
          Length = 462

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 7   TGQAVIKCQLAQH-KTPEEHPHKLFEEEQDNDGREVSCIVPK 47
           T  +V K   + H  T EE P    EEE++ +G++V  +  K
Sbjct: 214 TMSSVAKYPSSAHGNTHEEEPLLSIEEEEEEEGQDVHSLGSK 255


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.134    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,702
Number of Sequences: 37544
Number of extensions: 53581
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 6
length of query: 54
length of database: 14,793,348
effective HSP length: 35
effective length of query: 19
effective length of database: 13,479,308
effective search space: 256106852
effective search space used: 256106852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)