GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002463-TA|BGIBMGA002463-PA|undefined
         (54 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    25   6.4  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    25   6.4  
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr...    25   8.5  
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical...    25   8.5  

>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)

Query: 23  EEHPH--KLFEEEQDNDGREVSCI 44
           EEH H  +  EEE+DND  EVS +
Sbjct: 114 EEHGHSGQHAEEEEDNDTDEVSAM 137


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)

Query: 23  EEHPH--KLFEEEQDNDGREVSCI 44
           EEH H  +  EEE+DND  EVS +
Sbjct: 114 EEHGHSGQHAEEEEDNDTDEVSAM 137


>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical protein
            Y6B3B.1 protein.
          Length = 1829

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 8    GQAVIKCQLAQHKTPEEHPHKLFEEEQDNDGRE 40
            G A +   L QH+ P +   +L +E  + DG +
Sbjct: 1353 GDAALSPNLEQHQMPLDAQKELLKEISEQDGED 1385


>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
            protein Y6B3B.1 protein.
          Length = 1829

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 8    GQAVIKCQLAQHKTPEEHPHKLFEEEQDNDGRE 40
            G A +   L QH+ P +   +L +E  + DG +
Sbjct: 1353 GDAALSPNLEQHQMPLDAQKELLKEISEQDGED 1385


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.134    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,576,321
Number of Sequences: 27539
Number of extensions: 49213
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 4
length of query: 54
length of database: 12,573,161
effective HSP length: 35
effective length of query: 19
effective length of database: 11,609,296
effective search space: 220576624
effective search space used: 220576624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)