GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002463-TA|BGIBMGA002463-PA|undefined
         (54 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    20   2.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   3.6  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    19   4.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    19   4.8  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    19   6.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   6.3  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    19   6.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    18   8.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                18   8.4  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 9   QAVIKCQLAQHKTP--EEHPHKLFEEEQDND 37
           Q+V K +L  +K+   EEH +K  + ++D D
Sbjct: 191 QSVEKSELWVYKSKASEEHGNKKKKNKEDED 221


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.4 bits (38), Expect = 3.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 28  KLFEEEQDNDGREVSCIVPKQGIYK 52
           K FEE ++  G+   CI  K+ + K
Sbjct: 295 KAFEELEELLGKRNICIAIKEKLVK 319


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 19.0 bits (37), Expect = 4.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 32  EEQDNDGREVSCIVPKQG 49
           EEQ   GR ++CI  + G
Sbjct: 163 EEQFATGRVLACISSRPG 180


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 4.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 13  KCQLAQHKTPEEHPHKL 29
           KC     KT EE+P  +
Sbjct: 378 KCDRRNGKTTEENPKSI 394


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 13  KCQLAQHKTPEEHPHKL 29
           KC     KT EE+P  +
Sbjct: 378 KCDRRTGKTTEENPKSI 394


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2
          protein.
          Length = 570

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 38 GREVSCIVPKQGIYKVG 54
          G   S I PK+G+Y  G
Sbjct: 3  GSRSSEINPKEGLYDEG 19


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 13  KCQLAQHKTPEEHPHKL 29
           KC     KT EE+P  +
Sbjct: 89  KCDRRTGKTTEENPKSI 105


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 5/7 (71%), Positives = 5/7 (71%)

Query: 21  TPEEHPH 27
           TP  HPH
Sbjct: 462 TPHHHPH 468


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 5/11 (45%), Positives = 7/11 (63%)

Query: 18  QHKTPEEHPHK 28
           QH   + HPH+
Sbjct: 320 QHHPSQYHPHR 330


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.134    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,172
Number of Sequences: 429
Number of extensions: 517
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 54
length of database: 140,377
effective HSP length: 34
effective length of query: 20
effective length of database: 125,791
effective search space:  2515820
effective search space used:  2515820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.8 bits)
S2: 35 (18.2 bits)