GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002462-TA|BGIBMGA002462-PA|IPR013982|AICARFT/IMPCHase
bienzyme, formylation region, IPR002695|AICARFT/IMPCHase bienzyme,
IPR011607|MGS-like
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   682   0.0  
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces...    30   1.0  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    28   4.2  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    27   5.5  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    27   7.3  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    27   7.3  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    27   9.6  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  682 bits (1686), Expect = 0.0
 Identities = 340/587 (57%), Positives = 417/587 (71%), Gaps = 7/587 (1%)

Query: 6   ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVK 65
           ALLSV DKTGLL LAK+L+  G++L+ SGGTA  +R +G+ V DVS IT APE+LGGRVK
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 66  TLHPAVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDI 125
           TLHPAVH GILAR   SD++D+  Q  E I +VVCNLYPF +T++KP+VT+ +AVE IDI
Sbjct: 63  TLHPAVHGGILARDIPSDEKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEEIDI 122

Query: 126 GGVTLLRAAAKNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGTRQRLALKAFTHTSDYD 185
           GGVTLLRAAAKNH RVT++ DPADY     +   +K    T   R   ALKAF  T+ YD
Sbjct: 123 GGVTLLRAAAKNHARVTILSDPADYATFTDKFLSDK---LTQDDRNTYALKAFASTASYD 179

Query: 186 LAISDYFRKQYSPGQAQLTLRYGMNPHQKPAQVFTTRDSLPITTLNGAPGFINLCDALNA 245
            AI+DYFRKQY+ G  QLTLRYG NPHQ PAQ F  +  LP   L G+PG+INL DALN+
Sbjct: 180 AAITDYFRKQYAAGVDQLTLRYGANPHQSPAQAFMEQGPLPFKVLCGSPGYINLMDALNS 239

Query: 246 WQLVKELKEALSLPAAASFKHVSPAGAAVGLPLTDEEAAVCMVAG--ELSXXXXXXXXXX 303
           W LVKEL+E + +PAAASFKHVSPAGAAVGLPL+D E  V  V+   E +          
Sbjct: 240 WPLVKELRENIGIPAAASFKHVSPAGAAVGLPLSDVEKKVYFVSDITEFTPLACAYARAR 299

Query: 304 XXXXMSSFGDFVALSDPCDVSTATIISREVSDGVIAPGYSPEALKLLSKKKGGNYCVLKI 363
               MSSFGDF+ALSD  DV TA IISREVSDGVIAPGY PEAL+LL KKKGG YCVL++
Sbjct: 300 GADRMSSFGDFIALSDTVDVCTARIISREVSDGVIAPGYEPEALELLKKKKGGKYCVLQM 359

Query: 364 DPTYEPSLMEQKTIFGLTLEQKRNDAKITAELFKNVVTTKKDLPSNAVRDLIVATIALKY 423
           DP Y P+ +E + ++G++L+Q RN AKI   LF+ VV+  KDLP +A+ DL++AT ALKY
Sbjct: 360 DPKYVPAEIETRQVYGISLQQHRNHAKIDFSLFEKVVSKNKDLPKSALIDLVIATTALKY 419

Query: 424 TQSNSVCFARDGQVIGIGAGQQSRIHCTRLAGGKAALWWLRRHPSVLAMRFRQGVTRAVQ 483
           TQSNSVC+A++G V+G+GAGQQSRIHC RLAG KA  WWLR HP VL M+F++   R  +
Sbjct: 420 TQSNSVCYAKNGMVVGLGAGQQSRIHCNRLAGDKADNWWLRHHPKVLGMQFKKSAKRPEK 479

Query: 484 ANAIDNYVNGTVGSD-LPLEQWDTLFEGKPPALFTDSQREEWIKKMDKVALASDAFFPFR 542
           +NAID YV   V ++    EQW++ FE  P  L T  +REE++     V  ASDAFFPF 
Sbjct: 480 SNAIDLYVLDAVPAEGSEREQWESAFETIPEPL-TKKEREEFLATCKDVVCASDAFFPFP 538

Query: 543 DNIDRAVQCGVEYIGSPSGSNNDQEVIEACNEHKIALAHTNLRLFHH 589
           DNI R  Q GV+Y+ +P GS  DQ V +  NE  +  +   LRLFHH
Sbjct: 539 DNIYRLAQSGVKYVAAPGGSVMDQAVRDTANEFNMVFSEIPLRLFHH 585


>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 183

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 19/54 (35%), Positives = 27/54 (50%)

Query: 375 KTIFGLTLEQKRNDAKITAELFKNVVTTKKDLPSNAVRDLIVATIALKYTQSNS 428
           KT   LT ++   D +I  +L  N +  +  LPS  +RD IV     K + SNS
Sbjct: 32  KTGSALTSDKSLFDKRIVKQLKNNELFNRLTLPSQELRDGIVRENQTKPSNSNS 85


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 513 PALFTDSQREEWIKKMDKVALASDAFFPFRDNIDR---AVQCGVEYIG---SPSGSNNDQ 566
           P L     RE+ +  +DK+ L   A++ ++D+ D        GV+Y     S S SN  +
Sbjct: 413 PGLSLRVSREDEVLGLDKIELGESAYY-YKDSTDEPPPITTSGVQYTSPTVSDSASNEKE 471

Query: 567 EVIEACNE 574
           +   A NE
Sbjct: 472 QEHRAQNE 479


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 204  TLRYGMNPHQKPAQVFTTRDSLPITT----LNGAPGFINLCDALNAWQLVKELKEALS 257
            T+RY + PH KP    T R +    +    L  A    NL D  +A+QLV E    LS
Sbjct: 944  TIRYAVYPHSKPLDSSTVRAAHKFNSNFRLLTRASDTANL-DIFDAFQLVGEPNVILS 1000


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 193 RKQYSPGQAQLTLRYGMNP------HQKPAQVFTTRDSLPITTLNGAPGFINLCDALNAW 246
           R  Y P Q  LT  +G+NP      +    ++     SL +  ++  PGF +  D  + W
Sbjct: 118 RDVYPPTQKSLTGDFGVNPEPTVMINSSAVEIVENGISLQLNVID-TPGFGDFIDNTDCW 176

Query: 247 QLV 249
           Q V
Sbjct: 177 QPV 179


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 239 LCDALNAWQLVKELKEALSLPAAASFK 265
           LCD LN ++LV  L     LP  +SF+
Sbjct: 237 LCDQLNDYELVPTLNAISPLPLRSSFR 263


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 234 PGFINLCDALNAW-QLVKELKEALSL--PAAASFKHVSPAGAAVGLPLTDE 281
           P F   C  +N+W +  +E K  + L    A S+K + P+   V LP  DE
Sbjct: 189 PHFAIHCVLINSWSESDQEKKSFIDLVRSTAKSYKPLPPSSTGVSLPEHDE 239


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.132    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,599
Number of Sequences: 5004
Number of extensions: 98724
Number of successful extensions: 242
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 9
length of query: 589
length of database: 2,362,478
effective HSP length: 77
effective length of query: 512
effective length of database: 1,977,170
effective search space: 1012311040
effective search space used: 1012311040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)