Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002462-TA|BGIBMGA002462-PA|IPR013982|AICARFT/IMPCHase
bienzyme, formylation region, IPR002695|AICARFT/IMPCHase bienzyme,
IPR011607|MGS-like
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 203 4e-52
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 32 1.5
03_06_0639 - 35227780-35227813,35227963-35228099,35228505-35229449 31 2.6
03_02_0821 - 11519840-11519989,11520333-11520476,11520556-115207... 30 4.5
04_01_0182 - 2058396-2058456,2058623-2058660,2058748-2058850,205... 30 5.9
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 203 bits (495), Expect = 4e-52
Identities = 155/485 (31%), Positives = 230/485 (47%), Gaps = 52/485 (10%)
Query: 6 ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVK 65
AL+S+SDKT L L L G +I++GGTA++L AG+ V V IT PEML GRVK
Sbjct: 48 ALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGRVK 107
Query: 66 TLHPAVHAGILARLSDSDQ-EDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENID 124
TLHP+VH GILAR + + VVV NLYPF V+ ++ D +ENID
Sbjct: 108 TLHPSVHGGILARRDQEHHLKALNEHGIGTFDVVVVNLYPFYNKVTSGVISFEDGIENID 167
Query: 125 IGGVTLLRAAAKNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGTRQRLALKAFTHTSDY 184
IGG T++RAAAKNH V V+ D DY A+++ ++ + Q R+ LA KAF H + Y
Sbjct: 168 IGGPTMIRAAAKNHKDVLVMVDHEDYPALLEYLQGKQDDQQ---FRKMLAWKAFQHVASY 224
Query: 185 DLAISDYFRKQYS---------------------PGQAQLTLRYGMNPHQKPAQVFTTRD 223
D A+S++ KQ + P + TLRYG NPHQK A F
Sbjct: 225 DSAVSEWLWKQSNKDIITLSCSHVGDVFPPNFTVPLSLKSTLRYGENPHQKAA--FYGDK 282
Query: 224 SLPITTLNGAP----------GFINLCDALNAWQLVKELKEALSLPAAASFKHVSPAGAA 273
SL + G + N DA AW V E + P KH +P G A
Sbjct: 283 SLSVVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFES----PTCVVVKHTNPCGVA 338
Query: 274 VGLPLTDEEAAVCMVAGELSXXXXXXXXXXXXXXMSSFGDFVALSDPCDVSTATIISREV 333
+ EA V G+ + P D T R
Sbjct: 339 SRQDIL--EAYRLAVKGDPVSAFGGIVAFNTTIDEDLAKEIREFRSPTDGQT-----RMF 391
Query: 334 SDGVIAPGYSPEALKLLSKKKGGNYCVLKIDPTYEPSLMEQKTIFGLTLEQKRNDAKITA 393
+ V+APGY+ + L++L K K +L+ + + ++ + + G L Q+ +D +T
Sbjct: 392 YEIVVAPGYTEKGLEIL-KGKSKTLRILEAKRSGK-GMLSLRQVSGGWLAQESDD--LTP 447
Query: 394 ELFKNVVTTKKDLPSNAVRDLIVATIALKYTQSNSVCFARDGQVIGIGAGQQSRIHCTRL 453
E +++ + + D A + +K+ +SN++ A++ ++G+G+GQ +R+ R+
Sbjct: 448 EDITFTTVSERAPQDSELSDAKFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRLESLRI 507
Query: 454 AGGKA 458
A KA
Sbjct: 508 AFRKA 512
Score = 58.8 bits (136), Expect = 1e-08
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 532 ALASDAFFPF--RDNIDRAVQCGVEYIGSPSGSNNDQEVIEACNEHKIALAHTNLRLFHH 589
ALASDAFFPF D ++ A Q G+ I PSGS D + ++ CN++ ++L T +R F H
Sbjct: 520 ALASDAFFPFAWNDAVEEACQNGIGVIAEPSGSMRDGDAVDCCNKYGVSLLFTGVRHFRH 579
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.9 bits (69), Expect = 1.5
Identities = 13/32 (40%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 3 SGTALLSVSDKTGLLSLAKSLSECGLQLIASG 34
S T ++++ +KTG+L +A S+ +CGL++I G
Sbjct: 131 SATVIIAMLEKTGILKIA-SVGDCGLKVIRKG 161
>03_06_0639 - 35227780-35227813,35227963-35228099,35228505-35229449
Length = 371
Score = 31.1 bits (67), Expect = 2.6
Identities = 16/78 (20%), Positives = 37/78 (47%)
Query: 347 LKLLSKKKGGNYCVLKIDPTYEPSLMEQKTIFGLTLEQKRNDAKITAELFKNVVTTKKDL 406
+KL K+GG + K D + + + +F + + + +I AE+ ++ T +
Sbjct: 293 MKLPISKEGGTTRIKKDDDDDDEDMQFNQDLFFIRISDSKKLLEILAEIMVSIHTLENQA 352
Query: 407 PSNAVRDLIVATIALKYT 424
S V+ ++ + +K+T
Sbjct: 353 ISQYVKREVIEVVLIKHT 370
>03_02_0821 -
11519840-11519989,11520333-11520476,11520556-11520754,
11521309-11521412,11521488-11521598,11521653-11521771,
11521858-11522002,11522516-11522568,11522676-11522721,
11522818-11522963,11523691-11523760,11524930-11525083,
11525186-11525307,11525612-11525835,11526317-11526371,
11526793-11526972
Length = 673
Score = 30.3 bits (65), Expect = 4.5
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Query: 17 LSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGI- 75
L LA+ L C + +I G + + V D+ E G KT +V A +
Sbjct: 316 LQLAEDLDACPVWVINDGASLNEQIPSATIAAFVKDVVDGIEFARGDPKTTWGSVRAAMG 375
Query: 76 ------LARLSDSDQEDMK---RQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDI 125
L +S +QE K ++KY + YP ++ +S D++ AV D+
Sbjct: 376 HPEPFPLYYISVGNQECSKPYYKEKYVKFYSAIKASYPDIKIISSCDISSISAVNPADL 434
>04_01_0182 -
2058396-2058456,2058623-2058660,2058748-2058850,
2059485-2059567,2059651-2059944,2060440-2060572,
2060660-2060735,2060867-2060997,2061112-2061214,
2061305-2061578,2061661-2061732
Length = 455
Score = 29.9 bits (64), Expect = 5.9
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 389 AKITAELFKNVVTTKKDLPSNAVRDLIVATIALKYTQSNSVCFARDGQVIGIGAGQQSRI 448
A T++ K V+ + DL + V+ ++ AL + +D V+GI G +
Sbjct: 133 ASKTSDTPKRVIALR-DLANCEVKLVLWGEHALDFDADAVHSVGQDNVVVGIFVGTLMKA 191
Query: 449 HCTRLAGGKAALWWL 463
+ L+GG A W+L
Sbjct: 192 YNKTLSGGSACKWYL 206
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.132 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,467,076
Number of Sequences: 37544
Number of extensions: 671906
Number of successful extensions: 1545
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1536
Number of HSP's gapped (non-prelim): 8
length of query: 589
length of database: 14,793,348
effective HSP length: 86
effective length of query: 503
effective length of database: 11,564,564
effective search space: 5816975692
effective search space used: 5816975692
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
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