GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002462-TA|BGIBMGA002462-PA|IPR013982|AICARFT/IMPCHase
bienzyme, formylation region, IPR002695|AICARFT/IMPCHase bienzyme,
IPR011607|MGS-like
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)             599   e-171
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                     118   1e-26
SB_30521| Best HMM Match : DUF333 (HMM E-Value=9.4)                    38   0.017
SB_47280| Best HMM Match : DUF655 (HMM E-Value=2.2)                    31   3.4  
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)                30   6.0  
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.9  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  599 bits (1478), Expect = e-171
 Identities = 287/434 (66%), Positives = 346/434 (79%), Gaps = 3/434 (0%)

Query: 6   ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVK 65
           ALLSVS+K GL+  AK L + G +L+ASGGTA A+RNAG+ V+DVS+IT APEMLGGRVK
Sbjct: 36  ALLSVSNKKGLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVSEITGAPEMLGGRVK 95

Query: 66  TLHPAVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDI 125
           TLHPAVH GILAR+S+ D+ DM +Q +E I VVVCNLYPFV TV+K  V V++AVE IDI
Sbjct: 96  TLHPAVHGGILARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDI 155

Query: 126 GGVTLLRAAAKNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGTRQRLALKAFTHTSDYD 185
           GGVTLLRAAAKNH+RVTVVCDP DY+ V+ E+ EN+   T   TR+ LALKAF+HT+ YD
Sbjct: 156 GGVTLLRAAAKNHERVTVVCDPEDYNKVLSEMTENETCDTLPDTRKTLALKAFSHTASYD 215

Query: 186 LAISDYFRKQYSPGQAQLTLRYGMNPHQKPAQVFTTRDSLPITTLNGAPGFINLCDALNA 245
           +AISDYFRK+YS   + + LRYGMNPHQKPAQ+ T    LP+  LNGAPGFINLCDA N+
Sbjct: 216 MAISDYFRKEYSENVSHIPLRYGMNPHQKPAQLMTMEPELPVKVLNGAPGFINLCDAFNS 275

Query: 246 WQLVKELKEALSLPAAASFKHVSPAGAAVGLPLTDEEAAVCMV---AGELSXXXXXXXXX 302
           WQLV+EL ++L +PAAASFKHVSPAGAAVG PLT +EA VCMV      L+         
Sbjct: 276 WQLVRELHQSLGIPAAASFKHVSPAGAAVGTPLTPDEAKVCMVDDMLDRLTPLATAYARA 335

Query: 303 XXXXXMSSFGDFVALSDPCDVSTATIISREVSDGVIAPGYSPEALKLLSKKKGGNYCVLK 362
                MSSFGD+VALSD CD++TA IISREVSDGVIAP Y  EAL++L KKKGG YC+L+
Sbjct: 336 RGADRMSSFGDWVALSDECDLATAKIISREVSDGVIAPSYQNEALEVLKKKKGGKYCILQ 395

Query: 363 IDPTYEPSLMEQKTIFGLTLEQKRNDAKITAELFKNVVTTKKDLPSNAVRDLIVATIALK 422
           +DP+YEP  +E +TIFGL LEQ RN+AKI A++FKNV+T +KDLP +AVRDL VA+IALK
Sbjct: 396 MDPSYEPPALESRTIFGLQLEQLRNNAKIDADVFKNVMTKRKDLPESAVRDLTVASIALK 455

Query: 423 YTQSNSVCFARDGQ 436
           YTQSNSVC+A++GQ
Sbjct: 456 YTQSNSVCYAKNGQ 469



 Score =  101 bits (241), Expect = 2e-21
 Identities = 49/83 (59%), Positives = 59/83 (71%), Gaps = 1/83 (1%)

Query: 468 SVLAMRFRQGVTRAVQANAIDNYVNGTVGSDLPLEQWDTLFEGKPPALFTDSQREEWIKK 527
           SV   +  QGV RA  +NAID YVNGTVG D     W+ +FE  PP L T++ R+EWI K
Sbjct: 461 SVCYAKNGQGVKRAEMSNAIDVYVNGTVGQDTDKATWEAMFES-PPELLTENDRKEWIAK 519

Query: 528 MDKVALASDAFFPFRDNIDRAVQ 550
           +  V+L+SDAFFPFRDNIDRAVQ
Sbjct: 520 LKGVSLSSDAFFPFRDNIDRAVQ 542


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score =  118 bits (284), Expect = 1e-26
 Identities = 55/77 (71%), Positives = 65/77 (84%)

Query: 75  ILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRAA 134
           ILAR+S+ D+ DM +Q +E I VVVCNLYPFV TV+K  V V++AVE IDIGGVTLLRAA
Sbjct: 2   ILARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRAA 61

Query: 135 AKNHDRVTVVCDPADYD 151
           AKNH+RVTVVCDP DY+
Sbjct: 62  AKNHERVTVVCDPEDYN 78


>SB_30521| Best HMM Match : DUF333 (HMM E-Value=9.4)
          Length = 195

 Score = 38.3 bits (85), Expect = 0.017
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 417 ATIALKYTQSNSVCFARDGQVIGIGAGQQSRIHCTRLAGGKAA 459
           A +A     S    +A++   IGIGAGQ SR++  ++AG KAA
Sbjct: 71  AKLACLQVDSRGSPYAKNNMTIGIGAGQMSRVYSAKIAGIKAA 113


>SB_47280| Best HMM Match : DUF655 (HMM E-Value=2.2)
          Length = 508

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 7/79 (8%)

Query: 337 VIAPGYSPEALKLLSKK----KGGNYCVLKIDPT---YEPSLMEQKTIFGLTLEQKRNDA 389
           V+    +PE L  + KK    K  NYC L + P    Y+  L+E+  I   +L  + + +
Sbjct: 131 VLLETVNPEELSRILKKHPYDKFLNYCYLFLKPIWEQYDRPLLEKYIIGEASLGDEDHVS 190

Query: 390 KITAELFKNVVTTKKDLPS 408
               ELF   +  KK++PS
Sbjct: 191 PSLIELFDEYMDPKKEIPS 209


>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
          Length = 1706

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 139  DRVTVVCDPADYDAVVKEIKE-NKHHQTTL 167
            D +   CDPA+ +A++  I+E N+HHQ  L
Sbjct: 1447 DGILRTCDPAELEALLMLIEEQNEHHQKVL 1476


>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2409

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 402  TKKDLPSNAV--RDLIVATIALKYTQSNSVCFARDGQVIGIGAGQQSRIHCTRLAGGKAA 459
            T + + +NAV  R   VAT+ +K  +S +   + D + I + +GQ +   C    G +AA
Sbjct: 961  TYQCVAANAVGRRKSRVATVTIK--ESPTTALSIDPKQITVISGQSTSFSCQYRDGPQAA 1018

Query: 460  LWWLRRHPSVLAMRFRQGVTRAVQANAIDNYVNGTVGSDLPLE 502
            + W ++   +   R+    +  +Q ++I     G     +PLE
Sbjct: 1019 VRWQKKGGDLPLNRYVTTQSGELQLSSIQPGDAGEYVCSVPLE 1061


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.132    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,318,118
Number of Sequences: 59808
Number of extensions: 717030
Number of successful extensions: 1454
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1448
Number of HSP's gapped (non-prelim): 7
length of query: 589
length of database: 16,821,457
effective HSP length: 86
effective length of query: 503
effective length of database: 11,677,969
effective search space: 5874018407
effective search space used: 5874018407
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)