GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002462-TA|BGIBMGA002462-PA|IPR013982|AICARFT/IMPCHase
bienzyme, formylation region, IPR002695|AICARFT/IMPCHase bienzyme,
IPR011607|MGS-like
         (589 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    27   1.4  
Y08163-1|CAA69355.1|  192|Anopheles gambiae hypothetical protein...    25   5.6  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 442 AGQQSRIHCTRLAGGKAALWWLRRHPSVLAMRFRQGVTRAVQANAIDN--YVNGTVG 496
           A  + RI  TR  G   A+ WLR H  +   +  + +   +   A++N  ++  T+G
Sbjct: 412 ASNKLRILQTRFEGTYKAVLWLREHKHLFQGKIYEPMILELNVPALENVQFLENTIG 468


>Y08163-1|CAA69355.1|  192|Anopheles gambiae hypothetical protein
           protein.
          Length = 192

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 256 LSLPAAASFKHVSPAGAAVGLPLTDEEAAV 285
           L+  AAA    +   GA+VGLP  DEE  V
Sbjct: 3   LANTAAAVLLLIVCIGASVGLPTVDEENVV 32


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.132    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 573,802
Number of Sequences: 2123
Number of extensions: 22320
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 2
length of query: 589
length of database: 516,269
effective HSP length: 68
effective length of query: 521
effective length of database: 371,905
effective search space: 193762505
effective search space used: 193762505
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)