GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002462-TA|BGIBMGA002462-PA|IPR013982|AICARFT/IMPCHase
bienzyme, formylation region, IPR002695|AICARFT/IMPCHase bienzyme,
IPR011607|MGS-like
         (589 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   4.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   9.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   9.3  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 16  LLSLAKSLSECGLQLIASGGTATALRNA 43
           LLS  +S+SEC L   +S  +  + RN+
Sbjct: 166 LLSKRRSVSECSLGTASSTSSTASSRNS 193


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 408 SNAVRDLIVATIALKYTQSNSVCFARDGQVIGIGAGQQSRIHCTRLAGGKAALWWLR 464
           SN +   I   + LK   ++S  FA   +++ +  G  + +HC         + WL+
Sbjct: 789 SNGIGSGIGKVVQLKV--NSSPYFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWLK 843


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 408 SNAVRDLIVATIALKYTQSNSVCFARDGQVIGIGAGQQSRIHCTRLAGGKAALWWLR 464
           SN +   I   + LK   ++S  FA   +++ +  G  + +HC         + WL+
Sbjct: 785 SNGIGSGIGKVVQLKV--NSSPYFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWLK 839


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,599
Number of Sequences: 429
Number of extensions: 5972
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 3
length of query: 589
length of database: 140,377
effective HSP length: 61
effective length of query: 528
effective length of database: 114,208
effective search space: 60301824
effective search space used: 60301824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)