GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002461-TA|BGIBMGA002461-PA|IPR000056|Ribulose-phosphate
3-epimerase, IPR011060|Ribulose-phosphate binding barrel
         (197 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    26   0.18 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.2  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 1   MTRHLKALIGPSILNADLSQLYEESQKLLDNGADYL 36
           MTR+L    G  +  + ++ L  E  K LDNG  +L
Sbjct: 591 MTRYLGDFEGNQVEGSPVTSLNREEIKRLDNGVGFL 626


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 7/32 (21%), Positives = 19/32 (59%)

Query: 78  EQWITPMADAGVNQYTFHIEPVKDVIEVCRKV 109
           + W    ++ G+N++ F ++ ++D+    RK+
Sbjct: 52  DPWFAGSSNVGINKWRFLLQCLEDLDRSLRKL 83


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.138    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,158
Number of Sequences: 317
Number of extensions: 1995
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 197
length of database: 114,650
effective HSP length: 54
effective length of query: 143
effective length of database: 97,532
effective search space: 13947076
effective search space used: 13947076
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)