Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002461-TA|BGIBMGA002461-PA|IPR000056|Ribulose-phosphate
3-epimerase, IPR011060|Ribulose-phosphate binding barrel
(197 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomy... 180 1e-46
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||... 30 0.26
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c... 27 1.9
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 26 3.2
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 26 4.3
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 25 7.5
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 25 7.5
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 25 9.9
>SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 228
Score = 180 bits (439), Expect = 1e-46
Identities = 86/187 (45%), Positives = 125/187 (66%), Gaps = 2/187 (1%)
Query: 5 LKALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKI- 63
++A I PS+L D + L +E ++L G+D+LH+DVMD QFVPNLT G VVK +R
Sbjct: 2 VQAKIAPSLLAGDFANLEKEVGRMLKYGSDWLHVDVMDAQFVPNLTIGPIVVKAMRNHYT 61
Query: 64 -KDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKP 122
++AFF+ H+MV +PE++I +ADAG + + FH E + E+ + E GM VG A+KP
Sbjct: 62 KEEAFFDCHLMVIEPERYIDQLADAGASLFCFHYEATEKHEEIISRAHEKGMLVGCALKP 121
Query: 123 GTPVSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPS 182
TPV + ++ DMVL+MTVEPG GGQ FM + KV++LR+ YP L++EVDGG+
Sbjct: 122 KTPVEVILPFVEKLDMVLVMTVEPGKGGQSFMPECLPKVEFLRKKYPTLNVEVDGGLSLK 181
Query: 183 TINCCAN 189
T++ A+
Sbjct: 182 TVDAAAD 188
>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 327
Score = 29.9 bits (64), Expect = 0.26
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 142 MTVEPGFGGQKFMENQMAKV-QYLRENYPLLDIEVDG----GVGPSTINCCANVSIKPNN 196
+ + PG G ++M+ MAKV +Y R+N + I+ DG P ++ NV + PN
Sbjct: 116 IVIGPGLGRDEWMQEIMAKVIEYARKNDMPMVIDADGLWLIQQRPELVSGYHNVILTPNV 175
Query: 197 I 197
I
Sbjct: 176 I 176
>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 334
Score = 27.1 bits (57), Expect = 1.9
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 99 VKDVIEVCRKVREHGMKVGVAIKPGTPVSE----VEKYISISDMVLIMTVEPGFGGQKFM 154
+K V E +KV+ + AI P TP+ E +++++ D+ I EP K
Sbjct: 104 IKTVRETLKKVKTIDLYQCAAIDPDTPIEETMACLKEFVDSGDIRCIGLCEPSVEEIK-R 162
Query: 155 ENQMAKVQYLRENYPLLDIEVD 176
+ + ++ + +Y +L E++
Sbjct: 163 AHSVVRIAAIEVHYSMLFREIE 184
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 4 HLKALIGPSILNADLSQLYEESQKLLD-NGADY----LHLDVMDGQFVPNLTFGH 53
HLK +I + LNA+ QLY E L+ G Y +L+ + QF + +FG+
Sbjct: 783 HLKIIIMSATLNAEKFQLYFEGSNLITIPGKTYPVHRFYLEDILSQFGNDKSFGN 837
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 73 MVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKV--GVAIKPGTPVSEVE 130
+ K + W M + ++ F + ++ +E+C R ++V + TP+++V+
Sbjct: 24 LFSKYDLWSKAMDEKKLSSSLFTVNDTQEFLELCEACRRGDLEVVKSLVENYNTPINQVD 83
Query: 131 KYISISDMVL 140
++ S +VL
Sbjct: 84 QF-DYSPLVL 92
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 153 FMENQMAKVQYLRENYPLLDIEVDGGVG 180
F + +++Q L+E + LLD + DG +G
Sbjct: 39 FAQLTSSQIQELKEAFALLDKDGDGNIG 66
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.0 bits (52), Expect = 7.5
Identities = 18/77 (23%), Positives = 33/77 (42%)
Query: 114 MKVGVAIKPGTPVSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDI 173
M V I+ G +SE+ + + V ++ + G ++N V YL + P + I
Sbjct: 425 MIVQKIIEKGHSLSELTEAQELLGFVSVIIEKKGVDSLDDLQNVALMVHYLNNDDPQIQI 484
Query: 174 EVDGGVGPSTINCCANV 190
E+ + + I NV
Sbjct: 485 EILRSLKDTFIKAGENV 501
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 69 ETHMMVEKPEQWITPMADAGVNQYTFHIEP 98
E + V KP+ T + VNQY + +EP
Sbjct: 116 EVNSEVVKPDSATTENENRYVNQYNYPVEP 145
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.138 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 946,411
Number of Sequences: 5004
Number of extensions: 38758
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 8
length of query: 197
length of database: 2,362,478
effective HSP length: 69
effective length of query: 128
effective length of database: 2,017,202
effective search space: 258201856
effective search space used: 258201856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)
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