Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002461-TA|BGIBMGA002461-PA|IPR000056|Ribulose-phosphate
3-epimerase, IPR011060|Ribulose-phosphate binding barrel
(197 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0657 + 19271266-19271388,19271906-19271910,19272005-192720... 192 2e-49
03_01_0485 + 3695857-3695951,3696489-3696597,3696746-3696886,369... 135 2e-32
07_01_0587 - 4362843-4362977,4363072-4363131,4363228-4363305,436... 28 4.4
09_02_0150 - 5033342-5033806 28 5.8
04_03_1031 + 21850857-21851009,21852229-21852350,21852447-218528... 28 5.8
08_01_0121 - 963297-963743 27 7.7
03_06_0302 - 32981404-32981538,32981619-32981678,32981800-329818... 27 7.7
01_06_1828 - 40174446-40174543,40175031-40175171,40176518-401767... 27 7.7
>09_04_0657 +
19271266-19271388,19271906-19271910,19272005-19272067,
19272150-19272256,19272321-19272418,19273070-19273162,
19273279-19273320,19273464-19273619
Length = 228
Score = 192 bits (468), Expect = 2e-49
Identities = 92/187 (49%), Positives = 131/187 (70%), Gaps = 5/187 (2%)
Query: 7 ALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKIKDA 66
A I PS+L++D + L E+ +++ GAD+LH+D+MDG FVPNLT G PV++ LR K A
Sbjct: 7 AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTK-A 65
Query: 67 FFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVI-EVCRKVREHGMKVGVAIKPGTP 125
+ + H+MV P ++ P+A AG + +TFHIE +D E+ + ++ GM+ GV+++PGTP
Sbjct: 66 YLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTP 125
Query: 126 VSEVEKYISIS---DMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPS 182
V EV + ++VL+MTVEPGFGGQKFM M KV+ LR+ YP LDIEVDGG+GPS
Sbjct: 126 VEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPS 185
Query: 183 TINCCAN 189
TI+ A+
Sbjct: 186 TIDVAAS 192
>03_01_0485 +
3695857-3695951,3696489-3696597,3696746-3696886,
3696986-3697099,3697558-3697636,3698163-3698272,
3698344-3698400,3698520-3698609
Length = 264
Score = 135 bits (327), Expect = 2e-32
Identities = 71/180 (39%), Positives = 109/180 (60%), Gaps = 7/180 (3%)
Query: 8 LIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKIKDAF 67
++ PSIL+A+ S+L E+ + + G D++H+DVMDG+FVPN+T G VV LR + D
Sbjct: 52 IVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALR-PVTDLP 110
Query: 68 FETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVI--EVCRKVREHGMKVGVAIKPGTP 125
+ H+M+ +PEQ + AG + + H E + +++ G K GV + P TP
Sbjct: 111 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATP 170
Query: 126 VSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLR----ENYPLLDIEVDGGVGP 181
++ ++ + + D+VLIM+V PGFGGQ F+E+Q+ K+ LR E IEVDGGVGP
Sbjct: 171 LTAIDYVLDVVDLVLIMSVNPGFGGQSFIESQVKKIAELRRLCAEKGVNPWIEVDGGVGP 230
>07_01_0587 -
4362843-4362977,4363072-4363131,4363228-4363305,
4363552-4363629,4363950-4364026,4364416-4364590,
4364698-4364844,4365477-4365716
Length = 329
Score = 28.3 bits (60), Expect = 4.4
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 80 WITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSEVEKYISISDMV 139
++T + +AGV+ P+++ + + ++ +++ + P TP +EK S+
Sbjct: 177 FMTVVKEAGVHGLVVPDVPLEETNILRSEAAKNNLELVLLTTPTTPTERMEKITKASEGF 236
Query: 140 LIMTVEPGFGGQKFMENQMAKVQYLRENY-PLLDIEVDGGVGPST 183
+ + G G + N KVQ L ++ + D V G G ST
Sbjct: 237 IYLVSTVGVTGAR--ANVSGKVQSLLQDIKQVTDKAVAVGFGIST 279
>09_02_0150 - 5033342-5033806
Length = 154
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 157 QMAKVQYLRENYPLLDIEVDGGVGPSTINCCANVSIKPN 195
Q + + E LL I ++ GV P+ + C +SI+ N
Sbjct: 41 QYGRADRMHEAENLLHIMIENGVRPNNVRCTTLISIRCN 79
>04_03_1031 +
21850857-21851009,21852229-21852350,21852447-21852891,
21852981-21853087,21853192-21854524,21854632-21854859,
21854951-21855181,21855278-21855537,21855651-21856113
Length = 1113
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 9 IGPSILNADLSQLYEESQKLLDNGAD 34
I P L +S+LY+ KLLDN AD
Sbjct: 972 IAPPELQNTISELYDALVKLLDNNAD 997
>08_01_0121 - 963297-963743
Length = 148
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 149 GGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPSTI 184
GG++ E Q+A +RE + L D + DG + PS +
Sbjct: 2 GGKELSEEQVAS---MREAFSLFDTDGDGRIAPSEL 34
>03_06_0302 -
32981404-32981538,32981619-32981678,32981800-32981877,
32982264-32982341,32982516-32982592,32983271-32983445,
32983532-32983678,32984407-32984496
Length = 279
Score = 27.5 bits (58), Expect = 7.7
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 87 AGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSEVEKYISISDMVLIMTVEP 146
AGV+ P+++ + + HG+++ + P TP +++ S+ + +
Sbjct: 134 AGVHGLVVPDLPLEETALLRNEAVMHGIELVLLTTPTTPTERMKEIAKASEGFIYLVSSV 193
Query: 147 GFGGQKFMENQMAKVQY-LRENYPLLDIEVDGGVGPST 183
G G + N +V+Y L+E + D V G G ST
Sbjct: 194 GVTGAR--SNVNLRVEYLLQEIKKVTDKPVAVGFGIST 229
>01_06_1828 -
40174446-40174543,40175031-40175171,40176518-40176719,
40176815-40176914,40177029-40177081,40177951-40178097,
40178184-40178341,40178509-40178599,40179415-40179522,
40179815-40179952,40180154-40180246,40180342-40180434,
40180528-40180637,40181087-40181135,40181324-40181437,
40181530-40181589,40181674-40181742,40182034-40182135,
40182235-40182263,40182348-40182630,40183574-40183960
Length = 874
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 63 IKDAFFETHMMVEKPEQWITPMAD 86
I+DAFF+ MM ++ +TPM+D
Sbjct: 804 IRDAFFKRKMMTGVLDRCVTPMSD 827
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.138 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,995,765
Number of Sequences: 37544
Number of extensions: 246123
Number of successful extensions: 430
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 419
Number of HSP's gapped (non-prelim): 8
length of query: 197
length of database: 14,793,348
effective HSP length: 78
effective length of query: 119
effective length of database: 11,864,916
effective search space: 1411925004
effective search space used: 1411925004
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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