GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002461-TA|BGIBMGA002461-PA|IPR000056|Ribulose-phosphate
3-epimerase, IPR011060|Ribulose-phosphate binding barrel
         (197 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31691| Best HMM Match : No HMM Matches (HMM E-Value=.)             137   6e-33
SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)                  30   1.5  
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.9  
SB_35209| Best HMM Match : Ank (HMM E-Value=0)                         29   2.5  
SB_53519| Best HMM Match : zf-CCHC (HMM E-Value=0.00066)               27   7.8  
SB_16704| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_31691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score =  137 bits (331), Expect = 6e-33
 Identities = 83/180 (46%), Positives = 104/180 (57%), Gaps = 36/180 (20%)

Query: 9   IGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKIKDAFF 68
           IGPSILN DLS L +E  +LL  GADYLHLDVMDG FVPNLTFG P+VKCLR K+ +AFF
Sbjct: 42  IGPSILNGDLSCLADECNRLLQCGADYLHLDVMDGHFVPNLTFGAPLVKCLRKKVPNAFF 101

Query: 69  ETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSE 128
           + HMMV  PE+        G+      I+P   V +V   V    M + + ++PG     
Sbjct: 102 DMHMMVANPEK-------VGIG-----IKPGTPVTDVLPYVEHVNMVLIMTVEPG----- 144

Query: 129 VEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPSTINCCA 188
                              FGGQ FM + M K+++LR+ Y  LDIEVDGGVG ST++  A
Sbjct: 145 -------------------FGGQSFMADMMPKIEFLRQKYRELDIEVDGGVGTSTVDVAA 185


>SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2214

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 94  FHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSEVEKYISISDMVLIMTVEPGFGGQKF 153
           F +EP+  +  +C K+  +  +V  A+   TP  E + ++ +   +L + +      Q  
Sbjct: 561 FRLEPLNLISRLCDKLEVNVKRVRSALDAPTPPKE-DAFVPMVTSILEVLISDCMKEQDR 619

Query: 154 MENQMAKVQYLRENYPLL 171
            EN++ K+Q  R    +L
Sbjct: 620 FENEILKLQGHRNRLDIL 637


>SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)
          Length = 553

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 9/81 (11%)

Query: 95  HIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSEVEKYISISDMV--------LIMTVEP 146
           H+  VKD  ++C  V  + M  G     G  ++  E Y+ ++D           I  +  
Sbjct: 270 HLSRVKDKSDLCLPVTVYNMASGAGFVVGDAIAIPEPYVQVTDFTEDGKGFEQCIKILRL 329

Query: 147 GFGGQKFMENQMAKVQYLREN 167
             G   F  NQ+A +  +REN
Sbjct: 330 AVGKFSFCTNQIASLS-IREN 349


>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 26  QKLLDNGADYLHLDVMDGQFVPNLTFGHPVVK 57
           Q L+  G + +H+DV+DG    NL   HP  K
Sbjct: 401 QVLVVQGQNDIHVDVVDGSSEQNLINSHPTAK 432


>SB_35209| Best HMM Match : Ank (HMM E-Value=0)
          Length = 787

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 88  GVNQYT-FHIEPVKDVIEVCRKVREH-GMKVGVAIKPGTPVS 127
           G N YT  HI    D + +CRK+ EH G  V  A    TP+S
Sbjct: 221 GFNGYTPLHIAGQIDNVNICRKLVEHGGSVVAAADDKMTPLS 262


>SB_53519| Best HMM Match : zf-CCHC (HMM E-Value=0.00066)
          Length = 449

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)

Query: 30  DNGADYLHLDVMDGQFVPNLTFGH 53
           D   D L+L V+DG+F P L++GH
Sbjct: 356 DRKIDLLYL-VVDGEFTPLLSYGH 378


>SB_16704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 47  PNLTFGHPVVKCLRGKIKDAFF--ETHMMVEK 76
           PN    H VVKCL  K+++A    ++H++ EK
Sbjct: 187 PNAETKHAVVKCLSEKVRNAVINDKSHVISEK 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.138    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,756,092
Number of Sequences: 59808
Number of extensions: 272241
Number of successful extensions: 501
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 9
length of query: 197
length of database: 16,821,457
effective HSP length: 79
effective length of query: 118
effective length of database: 12,096,625
effective search space: 1427401750
effective search space used: 1427401750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)