Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002461-TA|BGIBMGA002461-PA|IPR000056|Ribulose-phosphate
3-epimerase, IPR011060|Ribulose-phosphate binding barrel
(197 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC072401-1|AAH72401.1| 228|Homo sapiens ribulose-5-phosphate-3-... 247 2e-65
BC016764-1|AAH16764.1| 228|Homo sapiens ribulose-5-phosphate-3-... 247 2e-65
BC005148-1|AAH05148.2| 228|Homo sapiens ribulose-5-phosphate-3-... 247 2e-65
DQ120706-1|ABC40667.1| 228|Homo sapiens rcRPE protein. 232 5e-61
AJ224326-1|CAA11895.1| 174|Homo sapiens ribulose-5-phosphate-ep... 169 7e-42
AK056028-1|BAB71076.1| 178|Homo sapiens protein ( Homo sapiens ... 143 4e-34
AC007038-1|AAX93087.1| 178|Homo sapiens unknown protein. 143 4e-34
AK093658-1|BAC04212.1| 178|Homo sapiens protein ( Homo sapiens ... 139 7e-33
>BC072401-1|AAH72401.1| 228|Homo sapiens
ribulose-5-phosphate-3-epimerase protein.
Length = 228
Score = 247 bits (604), Expect = 2e-65
Identities = 113/181 (62%), Positives = 142/181 (78%), Gaps = 1/181 (0%)
Query: 9 IGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKI-KDAF 67
IGPSILN+DL+ L E ++LD+GADYLHLDVMDG FVPN+TFGHPVV+ LR ++ +D F
Sbjct: 7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPF 66
Query: 68 FETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVS 127
F+ HMMV KPEQW+ PMA AG NQYTFH+E ++ + + +RE+GMKVG+AIKPGT V
Sbjct: 67 FDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVE 126
Query: 128 EVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPSTINCC 187
+ + + DM L+MTVEPGFGGQKFME+ M KV +LR +P LDIEVDGGVGP T++ C
Sbjct: 127 YLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKC 186
Query: 188 A 188
A
Sbjct: 187 A 187
>BC016764-1|AAH16764.1| 228|Homo sapiens
ribulose-5-phosphate-3-epimerase protein.
Length = 228
Score = 247 bits (604), Expect = 2e-65
Identities = 113/181 (62%), Positives = 142/181 (78%), Gaps = 1/181 (0%)
Query: 9 IGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKI-KDAF 67
IGPSILN+DL+ L E ++LD+GADYLHLDVMDG FVPN+TFGHPVV+ LR ++ +D F
Sbjct: 7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPF 66
Query: 68 FETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVS 127
F+ HMMV KPEQW+ PMA AG NQYTFH+E ++ + + +RE+GMKVG+AIKPGT V
Sbjct: 67 FDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVE 126
Query: 128 EVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPSTINCC 187
+ + + DM L+MTVEPGFGGQKFME+ M KV +LR +P LDIEVDGGVGP T++ C
Sbjct: 127 YLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKC 186
Query: 188 A 188
A
Sbjct: 187 A 187
>BC005148-1|AAH05148.2| 228|Homo sapiens
ribulose-5-phosphate-3-epimerase protein.
Length = 228
Score = 247 bits (604), Expect = 2e-65
Identities = 113/181 (62%), Positives = 142/181 (78%), Gaps = 1/181 (0%)
Query: 9 IGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKI-KDAF 67
IGPSILN+DL+ L E ++LD+GADYLHLDVMDG FVPN+TFGHPVV+ LR ++ +D F
Sbjct: 7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPF 66
Query: 68 FETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVS 127
F+ HMMV KPEQW+ PMA AG NQYTFH+E ++ + + +RE+GMKVG+AIKPGT V
Sbjct: 67 FDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVE 126
Query: 128 EVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPSTINCC 187
+ + + DM L+MTVEPGFGGQKFME+ M KV +LR +P LDIEVDGGVGP T++ C
Sbjct: 127 YLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKC 186
Query: 188 A 188
A
Sbjct: 187 A 187
>DQ120706-1|ABC40667.1| 228|Homo sapiens rcRPE protein.
Length = 228
Score = 232 bits (568), Expect = 5e-61
Identities = 108/181 (59%), Positives = 138/181 (76%), Gaps = 1/181 (0%)
Query: 9 IGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKI-KDAF 67
IGPSILN+DL+ L + ++LD+GADYLHLDVMDG FVPN+TFGHPVV+ LR ++ +D F
Sbjct: 7 IGPSILNSDLANLGAKCLQMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPF 66
Query: 68 FETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVS 127
F+ HMMV KPEQW+ PMA A NQYTFH+E ++ + + +RE+GMKVG+AIKPGT V
Sbjct: 67 FDMHMMVSKPEQWVKPMAVAEANQYTFHLEATENPGTLIKDIRENGMKVGLAIKPGTSVE 126
Query: 128 EVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPSTINCC 187
+ + + DM L+MTVEPGFG QKFME+ M KV +LR +P LDIE DGGVG T++ C
Sbjct: 127 YLAPWANQIDMALVMTVEPGFGEQKFMEDMMPKVHWLRTQFPSLDIEGDGGVGSDTVHKC 186
Query: 188 A 188
A
Sbjct: 187 A 187
>AJ224326-1|CAA11895.1| 174|Homo sapiens
ribulose-5-phosphate-epimerase protein.
Length = 174
Score = 169 bits (410), Expect = 7e-42
Identities = 75/125 (60%), Positives = 95/125 (76%)
Query: 64 KDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPG 123
+D FF+ HMMV KPEQW+ PMA AG NQYTFH+E ++ + + +RE+GMKVG+AIKPG
Sbjct: 9 QDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPG 68
Query: 124 TPVSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPST 183
T V + + + DM L+MTVEPGFGGQKFME+ M KV +LR +P LDIEVDGGVGP T
Sbjct: 69 TSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDT 128
Query: 184 INCCA 188
++ CA
Sbjct: 129 VHKCA 133
>AK056028-1|BAB71076.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ31466 fis, clone NT2NE2001372, highly similar to
Homo sapiens mRNA for putative
ribulose-5-phosphate-epimerase. ).
Length = 178
Score = 143 bits (346), Expect = 4e-34
Identities = 72/136 (52%), Positives = 90/136 (66%), Gaps = 18/136 (13%)
Query: 71 HMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMK--------------- 115
HMMV KPEQW+ PMA AG NQYTFH+E ++ + + +RE+GMK
Sbjct: 2 HMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKSCSVTQAEVQWHSQG 61
Query: 116 ---VGVAIKPGTPVSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLD 172
VG+AIKPGT V + + + DM L+MTVEPGFGGQKFME+ M KV +LR +P LD
Sbjct: 62 PLQVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLD 121
Query: 173 IEVDGGVGPSTINCCA 188
IEVDGGVGP T++ CA
Sbjct: 122 IEVDGGVGPDTVHKCA 137
>AC007038-1|AAX93087.1| 178|Homo sapiens unknown protein.
Length = 178
Score = 143 bits (346), Expect = 4e-34
Identities = 72/136 (52%), Positives = 90/136 (66%), Gaps = 18/136 (13%)
Query: 71 HMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMK--------------- 115
HMMV KPEQW+ PMA AG NQYTFH+E ++ + + +RE+GMK
Sbjct: 2 HMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKSCSVTQAEVQWHSQG 61
Query: 116 ---VGVAIKPGTPVSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLD 172
VG+AIKPGT V + + + DM L+MTVEPGFGGQKFME+ M KV +LR +P LD
Sbjct: 62 PLQVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLD 121
Query: 173 IEVDGGVGPSTINCCA 188
IEVDGGVGP T++ CA
Sbjct: 122 IEVDGGVGPDTVHKCA 137
>AK093658-1|BAC04212.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ36339 fis, clone THYMU2006365, highly similar to
Homo sapiens mRNA for putative
ribulose-5-phosphate-epimerase. ).
Length = 178
Score = 139 bits (336), Expect = 7e-33
Identities = 71/136 (52%), Positives = 89/136 (65%), Gaps = 18/136 (13%)
Query: 71 HMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMK--------------- 115
HMMV KPEQW+ PMA AG NQYTFH+E ++ + + +RE+GMK
Sbjct: 2 HMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKSCSVTQAEVQWHSQG 61
Query: 116 ---VGVAIKPGTPVSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLD 172
VG+AIKPGT V + + + DM L+MTVEPGFGGQKFME+ M KV +LR +P LD
Sbjct: 62 PLQVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLD 121
Query: 173 IEVDGGVGPSTINCCA 188
IEVDGGVG T++ CA
Sbjct: 122 IEVDGGVGLDTVHKCA 137
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.320 0.138 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,090,051
Number of Sequences: 224733
Number of extensions: 1207800
Number of successful extensions: 2067
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2052
Number of HSP's gapped (non-prelim): 8
length of query: 197
length of database: 73,234,838
effective HSP length: 86
effective length of query: 111
effective length of database: 53,907,800
effective search space: 5983765800
effective search space used: 5983765800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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