GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002461-TA|BGIBMGA002461-PA|IPR000056|Ribulose-phosphate
3-epimerase, IPR011060|Ribulose-phosphate binding barrel
         (197 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061110-1|AAL28658.1|  221|Drosophila melanogaster LD09559p pro...   311   4e-85
AE013599-451|AAM71098.1|  221|Drosophila melanogaster CG30499-PA...   311   4e-85
BT003492-1|AAO39495.1|  766|Drosophila melanogaster RE55430p pro...    38   0.007
AE014297-2928|AAF55848.1|  766|Drosophila melanogaster CG7034-PA...    38   0.007
AY118788-1|AAM50648.1|  189|Drosophila melanogaster GH15296p pro...    32   0.46 
AF014951-1|AAB67804.1|  185|Drosophila melanogaster calcium-bind...    32   0.46 
AF189221-1|AAF61856.1|  743|Drosophila melanogaster HERC2 protein.     29   5.6  
AY094876-1|AAM11229.1|  312|Drosophila melanogaster RE41485p pro...    28   9.8  
AE014296-2599|AAF49565.1|  312|Drosophila melanogaster CG17032-P...    28   9.8  

>AY061110-1|AAL28658.1|  221|Drosophila melanogaster LD09559p
           protein.
          Length = 221

 Score =  311 bits (764), Expect = 4e-85
 Identities = 142/184 (77%), Positives = 162/184 (88%)

Query: 5   LKALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKIK 64
           ++A IGPSILNADLS L  ESQKLLDNGADYLHLDVMDG FVPNLTFGHP+VK LR KIK
Sbjct: 3   VQAKIGPSILNADLSNLAAESQKLLDNGADYLHLDVMDGTFVPNLTFGHPMVKSLRNKIK 62

Query: 65  DAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGT 124
            AFFETHMMV+ PEQWI PMADAGVN YTFH+EPV+DV+ V R+V+E GMKVG+AIKPGT
Sbjct: 63  TAFFETHMMVQNPEQWIEPMADAGVNLYTFHVEPVQDVVRVSRRVQESGMKVGLAIKPGT 122

Query: 125 PVSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPSTI 184
            V ++EKY+SI+D+VL+MTVEPGFGGQ FM + M KV++LRENYP LDIEVDGGVGP TI
Sbjct: 123 EVQDLEKYLSIADVVLVMTVEPGFGGQSFMADMMPKVKWLRENYPNLDIEVDGGVGPKTI 182

Query: 185 NCCA 188
           +CCA
Sbjct: 183 HCCA 186


>AE013599-451|AAM71098.1|  221|Drosophila melanogaster CG30499-PA
           protein.
          Length = 221

 Score =  311 bits (764), Expect = 4e-85
 Identities = 142/184 (77%), Positives = 162/184 (88%)

Query: 5   LKALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKIK 64
           ++A IGPSILNADLS L  ESQKLLDNGADYLHLDVMDG FVPNLTFGHP+VK LR KIK
Sbjct: 3   VQAKIGPSILNADLSNLAAESQKLLDNGADYLHLDVMDGTFVPNLTFGHPMVKSLRNKIK 62

Query: 65  DAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGT 124
            AFFETHMMV+ PEQWI PMADAGVN YTFH+EPV+DV+ V R+V+E GMKVG+AIKPGT
Sbjct: 63  TAFFETHMMVQNPEQWIEPMADAGVNLYTFHVEPVQDVVRVSRRVQESGMKVGLAIKPGT 122

Query: 125 PVSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPSTI 184
            V ++EKY+SI+D+VL+MTVEPGFGGQ FM + M KV++LRENYP LDIEVDGGVGP TI
Sbjct: 123 EVQDLEKYLSIADVVLVMTVEPGFGGQSFMADMMPKVKWLRENYPNLDIEVDGGVGPKTI 182

Query: 185 NCCA 188
           +CCA
Sbjct: 183 HCCA 186


>BT003492-1|AAO39495.1|  766|Drosophila melanogaster RE55430p
           protein.
          Length = 766

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 6/100 (6%)

Query: 19  SQLYEESQKLLDNGA-DYLHLDVMDGQFVPNLTFGHPVVKCLRGKIKDAFFETHMMVEKP 77
           S +Y+E  K +  GA   ++LD+M  +F        PV     G++   F     +++  
Sbjct: 640 SIMYDEDVKQISTGALTQINLDLMQCEF---FAASEPVPGLKEGELSKYFLRNRQLLDLL 696

Query: 78  --EQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMK 115
             E+W T   D G  +  +H+   + +I +  K+RE   K
Sbjct: 697 ILEEWSTYFHDYGKQENRYHLVQPQSIIVILEKIREADKK 736


>AE014297-2928|AAF55848.1|  766|Drosophila melanogaster CG7034-PA
           protein.
          Length = 766

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 6/100 (6%)

Query: 19  SQLYEESQKLLDNGA-DYLHLDVMDGQFVPNLTFGHPVVKCLRGKIKDAFFETHMMVEKP 77
           S +Y+E  K +  GA   ++LD+M  +F        PV     G++   F     +++  
Sbjct: 640 SIMYDEDVKQISTGALTQINLDLMQCEF---FAASEPVPGLKEGELSKYFLRNRQLLDLL 696

Query: 78  --EQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMK 115
             E+W T   D G  +  +H+   + +I +  K+RE   K
Sbjct: 697 ILEEWSTYFHDYGKQENRYHLVQPQSIIVILEKIREADKK 736


>AY118788-1|AAM50648.1|  189|Drosophila melanogaster GH15296p
           protein.
          Length = 189

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 126 VSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDG--GVGPST 183
           +++ +K   IS+      V+    G+K+ E   A   ++  N+ LLDI+ DG  GV    
Sbjct: 68  IADDDKDGKISNQEFKDAVKKTCVGKKYEEFPQAMRAFIESNFKLLDIDSDGIVGVKEYR 127

Query: 184 INCCANVSI 192
            NC   V+I
Sbjct: 128 YNCITRVAI 136


>AF014951-1|AAB67804.1|  185|Drosophila melanogaster calcium-binding
           protein protein.
          Length = 185

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 126 VSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDG--GVGPST 183
           +++ +K   IS+      V+    G+K+ E   A   ++  N+ LLDI+ DG  GV    
Sbjct: 64  IADDDKDGKISNQEFKDAVKKTCVGKKYEEFPQAMRAFIESNFKLLDIDSDGIVGVKEYR 123

Query: 184 INCCANVSI 192
            NC   V+I
Sbjct: 124 YNCITRVAI 132


>AF189221-1|AAF61856.1|  743|Drosophila melanogaster HERC2 protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 86  DAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVS 127
           +AG N+  F ++P    +      R  G+ +G+A++ G+P+S
Sbjct: 430 EAGANRDCFLLDPTLSSVLQMNMFRFLGVLMGIAVRTGSPLS 471


>AY094876-1|AAM11229.1|  312|Drosophila melanogaster RE41485p
           protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 146 PGFGGQK-FMENQMAKVQY-LRENYPLLDIEVDGGVGPSTINCCANVSIKP 194
           PGFGG   F  NQ  KVQ             VD G GP   N  ANV + P
Sbjct: 145 PGFGGNPGFGGNQGGKVQAGTSAGAGGTKAGVDVGAGPDGGNANANVELNP 195


>AE014296-2599|AAF49565.1|  312|Drosophila melanogaster CG17032-PA
           protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 146 PGFGGQK-FMENQMAKVQY-LRENYPLLDIEVDGGVGPSTINCCANVSIKP 194
           PGFGG   F  NQ  KVQ             VD G GP   N  ANV + P
Sbjct: 145 PGFGGNPGFGGNQGGKVQAGTSAGAGGTKAGVDVGAGPDGGNANANVELNP 195


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.320    0.138    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,198,426
Number of Sequences: 52641
Number of extensions: 423303
Number of successful extensions: 748
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 9
length of query: 197
length of database: 24,830,863
effective HSP length: 81
effective length of query: 116
effective length of database: 20,566,942
effective search space: 2385765272
effective search space used: 2385765272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)