GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002461-TA|BGIBMGA002461-PA|IPR000056|Ribulose-phosphate
3-epimerase, IPR011060|Ribulose-phosphate binding barrel
         (197 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28991-4|AAK68310.1|  227|Caenorhabditis elegans Hypothetical pr...   219   1e-57
Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z81015-5|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U28991-4|AAK68310.1|  227|Caenorhabditis elegans Hypothetical
           protein F08F8.7 protein.
          Length = 227

 Score =  219 bits (535), Expect = 1e-57
 Identities = 107/188 (56%), Positives = 132/188 (70%), Gaps = 4/188 (2%)

Query: 5   LKALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKI- 63
           L+  + PSILNADL+ L  E +KLL  GAD+LHLDVMDG FVPNLTFGHPVV+ LR  + 
Sbjct: 3   LRPFVCPSILNADLASLASECKKLLAAGADWLHLDVMDGHFVPNLTFGHPVVESLRKSLG 62

Query: 64  KDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKD---VIEVCRKVREHGMKVGVAI 120
            + FF+ H+MV  P QW+ PMA AG +Q+TFH E V     V E+  K+R+ GMKVG+++
Sbjct: 63  AEPFFDVHLMVSNPGQWVEPMAKAGASQFTFHYEAVDGDVAVSELIEKIRKSGMKVGLSV 122

Query: 121 KPGTPVSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVG 180
           KPGT V  + K+ +  D  LIMTVEPGFGGQKFMEN M KV+ +R  YP L I+VDGGV 
Sbjct: 123 KPGTSVEHILKHANHLDNALIMTVEPGFGGQKFMENMMEKVRTIRSKYPNLTIQVDGGVT 182

Query: 181 PSTINCCA 188
           P  I   A
Sbjct: 183 PENIEISA 190


>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical
           protein K08E4.1 protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/25 (36%), Positives = 19/25 (76%)

Query: 87  AGVNQYTFHIEPVKDVIEVCRKVRE 111
           + +NQ+T  + P+KD+++V R V++
Sbjct: 249 SALNQFTITMVPIKDMVDVLRVVKD 273


>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical
           protein K08E4.1 protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/25 (36%), Positives = 19/25 (76%)

Query: 87  AGVNQYTFHIEPVKDVIEVCRKVRE 111
           + +NQ+T  + P+KD+++V R V++
Sbjct: 249 SALNQFTITMVPIKDMVDVLRVVKD 273


>Z81015-5|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
           protein C11E4.6 protein.
          Length = 1170

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 92  YTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGT 124
           Y FH+    + +E  + +REHG  +    + GT
Sbjct: 217 YPFHLAAKYNHVECMQALREHGFSINYTTEDGT 249


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.138    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,141,467
Number of Sequences: 27539
Number of extensions: 218111
Number of successful extensions: 394
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 4
length of query: 197
length of database: 12,573,161
effective HSP length: 78
effective length of query: 119
effective length of database: 10,425,119
effective search space: 1240589161
effective search space used: 1240589161
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)