Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002460-TA|BGIBMGA002460-PA|IPR001900|Ribonuclease II and
R
(390 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q960A7 Cluster: SD10981p; n=13; Coelomata|Rep: SD10981p... 438 e-122
UniRef50_Q9Y2L1 Cluster: Exosome complex exonuclease RRP44; n=35... 400 e-110
UniRef50_Q17632 Cluster: Probable exosome complex exonuclease RR... 368 e-100
UniRef50_Q6ZQ07 Cluster: MKIAA1008 protein; n=4; Deuterostomia|R... 357 4e-97
UniRef50_Q4P861 Cluster: Putative uncharacterized protein; n=2; ... 326 8e-88
UniRef50_Q0CT74 Cluster: Mitotic control protein dis3; n=16; Asc... 319 9e-86
UniRef50_P37202 Cluster: Mitotic control protein dis3; n=1; Schi... 318 2e-85
UniRef50_Q54BH9 Cluster: Putative uncharacterized protein; n=1; ... 317 4e-85
UniRef50_UPI000049906F Cluster: exosome complex exonuclease; n=1... 312 8e-84
UniRef50_A7PKV4 Cluster: Chromosome chr7 scaffold_20, whole geno... 306 7e-82
UniRef50_Q23DE7 Cluster: RNB-like protein; n=1; Tetrahymena ther... 302 1e-80
UniRef50_Q4DG23 Cluster: RRP44p homologue, putative; n=4; Trypan... 300 4e-80
UniRef50_Q08162 Cluster: Exosome complex exonuclease RRP44; n=12... 297 3e-79
UniRef50_Q4Q8N7 Cluster: Rrp44p homologue, putative; n=3; Leishm... 292 1e-77
UniRef50_Q00YG1 Cluster: Exosomal 3'-5' exoribonuclease complex,... 290 4e-77
UniRef50_Q9SNK4 Cluster: EST AU068209(C12438) corresponds to a r... 281 2e-74
UniRef50_A2FUQ4 Cluster: RNB-like protein; n=1; Trichomonas vagi... 266 9e-70
UniRef50_A7AWK8 Cluster: RNB-like domain containing protein; n=1... 248 1e-64
UniRef50_A3FQ82 Cluster: Mitotic control protein dis3, putative;... 242 1e-62
UniRef50_A0CC06 Cluster: Chromosome undetermined scaffold_166, w... 241 2e-62
UniRef50_Q00VG4 Cluster: Exosomal 3'-5' exoribonuclease complex,... 229 7e-59
UniRef50_Q4UH40 Cluster: Exosome complex exonuclease rrp44, puta... 226 7e-58
UniRef50_A7S7H2 Cluster: Predicted protein; n=2; Nematostella ve... 213 9e-54
UniRef50_Q8IDB6 Cluster: Mitotic control protein dis3 homologue,... 212 1e-53
UniRef50_Q8WTU9 Cluster: DIS3 mitotic control homolog (S. cerevi... 212 2e-53
UniRef50_Q69Z56 Cluster: MKIAA1955 protein; n=17; Euteleostomi|R... 211 2e-53
UniRef50_Q4YNU8 Cluster: Mitotic control protein dis3 homologue,... 208 2e-52
UniRef50_Q55FB1 Cluster: Putative uncharacterized protein; n=1; ... 206 8e-52
UniRef50_Q4RNE5 Cluster: Chromosome undetermined SCAF15013, whol... 204 3e-51
UniRef50_UPI0000E4632C Cluster: PREDICTED: similar to mKIAA1955 ... 201 3e-50
UniRef50_Q8SW47 Cluster: Similarity to DIS3 PROTEIN; n=1; Enceph... 195 2e-48
UniRef50_Q4T2G1 Cluster: Chromosome undetermined SCAF10273, whol... 194 4e-48
UniRef50_O14040 Cluster: Ribonuclease II (RNB) family; n=2; Schi... 186 1e-45
UniRef50_UPI0000E47D53 Cluster: PREDICTED: hypothetical protein,... 165 2e-39
UniRef50_Q5KDY7 Cluster: SSD1 protein, putative; n=2; Filobasidi... 162 2e-38
UniRef50_Q54XT5 Cluster: Putative uncharacterized protein; n=1; ... 161 4e-38
UniRef50_A7S1B6 Cluster: Predicted protein; n=1; Nematostella ve... 161 4e-38
UniRef50_UPI000065FEE8 Cluster: DIS3 mitotic control homolog (S.... 154 4e-36
UniRef50_Q17L93 Cluster: Ribonuclease; n=2; Culicidae|Rep: Ribon... 150 7e-35
UniRef50_Q09568 Cluster: Uncharacterized ribonuclease F48E8.6; n... 147 5e-34
UniRef50_A7NV97 Cluster: Chromosome chr18 scaffold_1, whole geno... 146 7e-34
UniRef50_Q8IYB7 Cluster: DIS3 mitotic control homolog (S. cerevi... 146 1e-33
UniRef50_UPI00015B4E71 Cluster: PREDICTED: similar to ribonuclea... 140 4e-32
UniRef50_Q5BYX9 Cluster: SJCHGC05889 protein; n=1; Schistosoma j... 139 1e-31
UniRef50_Q11XW5 Cluster: Exoribonuclease II; n=5; cellular organ... 138 2e-31
UniRef50_Q2S2D1 Cluster: Ribonuclease R; n=1; Salinibacter ruber... 135 2e-30
UniRef50_Q8A378 Cluster: Ribonuclease R; n=9; Bacteroidales|Rep:... 132 2e-29
UniRef50_UPI0000DB782F Cluster: PREDICTED: similar to CG16940-PA... 130 8e-29
UniRef50_Q4SNZ0 Cluster: Chromosome 15 SCAF14542, whole genome s... 127 4e-28
UniRef50_Q384J0 Cluster: Exosome complex exonuclease RRP44, puta... 127 4e-28
UniRef50_A6EL71 Cluster: Exoribonuclease II; n=15; Bacteroidetes... 126 8e-28
UniRef50_A0BWE7 Cluster: Chromosome undetermined scaffold_131, w... 126 8e-28
UniRef50_Q8KF23 Cluster: Ribonuclease II family protein; n=10; C... 126 1e-27
UniRef50_Q8XKU6 Cluster: Ribonuclease R; n=11; Firmicutes|Rep: R... 125 2e-27
UniRef50_UPI0000D56C52 Cluster: PREDICTED: similar to CG16940-PA... 124 4e-27
UniRef50_Q00X95 Cluster: Exosomal 3'-5' exoribonuclease complex,... 124 5e-27
UniRef50_Q54N92 Cluster: Putative uncharacterized protein; n=1; ... 119 1e-25
UniRef50_Q6MYZ1 Cluster: Protein phosphatase ssd1 homologue, put... 119 2e-25
UniRef50_Q88YG8 Cluster: Ribonuclease R; n=11; Lactobacillales|R... 116 1e-24
UniRef50_Q1Q6K5 Cluster: Similar to ribonuclease R; n=1; Candida... 114 4e-24
UniRef50_UPI00006CBEC4 Cluster: RNB-like protein; n=1; Tetrahyme... 112 1e-23
UniRef50_Q6E6C1 Cluster: DIS3 protein-like protein; n=1; Antonos... 112 1e-23
UniRef50_Q9WZI1 Cluster: Ribonuclease R; n=5; Thermotogaceae|Rep... 110 5e-23
UniRef50_Q9RXG0 Cluster: Ribonuclease; n=3; Deinococcus|Rep: Rib... 109 9e-23
UniRef50_Q7P474 Cluster: Exoribonuclease II; n=3; Fusobacterium ... 109 9e-23
UniRef50_Q0B076 Cluster: Exoribonuclease II; n=1; Syntrophomonas... 109 2e-22
UniRef50_A6BJ76 Cluster: Putative uncharacterized protein; n=2; ... 109 2e-22
UniRef50_Q67SL9 Cluster: Ribonulease R; n=7; Firmicutes|Rep: Rib... 107 4e-22
UniRef50_Q5SJU8 Cluster: Exoribonuclease; n=2; Thermus thermophi... 107 4e-22
UniRef50_Q6MCC7 Cluster: Putative ribonuclease R; n=1; Candidatu... 106 1e-21
UniRef50_Q39GY3 Cluster: 3'-5' exoribonuclease, VacB and RNase I... 105 2e-21
UniRef50_Q01VX0 Cluster: Ribonuclease R; n=1; Solibacter usitatu... 105 2e-21
UniRef50_Q1IJI5 Cluster: Ribonuclease R; n=1; Acidobacteria bact... 105 2e-21
UniRef50_Q4Q8M6 Cluster: Ribonuclease II-like protein, putative;... 105 2e-21
UniRef50_UPI0000E47D08 Cluster: PREDICTED: similar to PPAR-alpha... 105 3e-21
UniRef50_Q6C1S7 Cluster: Yarrowia lipolytica chromosome F of str... 104 5e-21
UniRef50_O32231 Cluster: Ribonuclease R; n=63; Firmicutes|Rep: R... 104 5e-21
UniRef50_A5KIG0 Cluster: Putative uncharacterized protein; n=2; ... 103 6e-21
UniRef50_A5IXZ7 Cluster: Ribonuclease R (VacB-like (Shigella fle... 103 6e-21
UniRef50_A1WUS9 Cluster: Ribonuclease R; n=2; Ectothiorhodospira... 103 6e-21
UniRef50_UPI0000E47E78 Cluster: PREDICTED: similar to PPAR-alpha... 103 8e-21
UniRef50_Q9CH00 Cluster: Ribonuclease R 1; n=46; Lactobacillales... 103 1e-20
UniRef50_Q2AEI5 Cluster: 3'-5' exoribonuclease, VacB and RNase I... 102 2e-20
UniRef50_Q1NL99 Cluster: 3'-5' exoribonuclease, VacB and RNase I... 101 2e-20
UniRef50_A6SZV8 Cluster: Exoribonuclease RNAse R; n=20; Burkhold... 101 2e-20
UniRef50_A5EVE2 Cluster: Ribonuclease R; n=1; Dichelobacter nodo... 101 4e-20
UniRef50_Q8IRJ7 Cluster: CG16940-PC, isoform C; n=4; Sophophora|... 99 2e-19
UniRef50_O67834 Cluster: Ribonuclease R; n=2; Aquifex aeolicus|R... 98 4e-19
UniRef50_Q02146 Cluster: Ribonuclease R 2; n=3; Lactococcus lact... 97 5e-19
UniRef50_UPI0000E4A47E Cluster: PREDICTED: similar to CG9425-PB,... 97 7e-19
UniRef50_Q4UGX2 Cluster: Possible ribonuclease ii family protein... 97 7e-19
UniRef50_Q74D34 Cluster: Ribonuclease R, putative; n=7; Desulfur... 97 9e-19
UniRef50_Q04E22 Cluster: Exoribonuclease R; n=2; Oenococcus oeni... 96 2e-18
UniRef50_Q7QUJ8 Cluster: GLP_436_41516_39297; n=1; Giardia lambl... 96 2e-18
UniRef50_P54084 Cluster: Ribonuclease R; n=33; Gammaproteobacter... 95 2e-18
UniRef50_A6NVY9 Cluster: Putative uncharacterized protein; n=1; ... 95 4e-18
UniRef50_Q4A6A7 Cluster: VACB-like ribonuclease II; n=2; Mycopla... 93 9e-18
UniRef50_A6VV57 Cluster: Ribonuclease R; n=1; Marinomonas sp. MW... 93 9e-18
UniRef50_A3EPY9 Cluster: Exoribonuclease R; n=1; Leptospirillum ... 93 9e-18
UniRef50_Q1GTS6 Cluster: Ribonuclease R; n=8; Sphingomonadales|R... 93 1e-17
UniRef50_P40611 Cluster: Ribonuclease R; n=137; Proteobacteria|R... 92 2e-17
UniRef50_Q11IM6 Cluster: Ribonuclease R; n=2; Alphaproteobacteri... 91 5e-17
UniRef50_A6QWR5 Cluster: Putative uncharacterized protein; n=1; ... 91 6e-17
UniRef50_Q9PR88 Cluster: Ribonuclease R; n=1; Ureaplasma parvum|... 91 6e-17
UniRef50_A4YWH1 Cluster: Ribonuclease R; n=31; Alphaproteobacter... 89 1e-16
UniRef50_O94525 Cluster: Ribonuclease II (RNB) family; n=1; Schi... 89 2e-16
UniRef50_Q6F7U9 Cluster: Exoribonuclease R; n=5; Moraxellaceae|R... 88 4e-16
UniRef50_Q9PBZ8 Cluster: VacB protein; n=16; Xanthomonadaceae|Re... 87 7e-16
UniRef50_A2AS03 Cluster: Novel protein (Possible orthologue of h... 86 1e-15
UniRef50_Q5FLT5 Cluster: Ribonuclease R; n=3; Lactobacillus|Rep:... 85 2e-15
UniRef50_Q31FJ1 Cluster: Ribonuclease R; n=1; Thiomicrospira cru... 85 4e-15
UniRef50_Q0VMF7 Cluster: Ribonuclease R; n=1; Alcanivorax borkum... 85 4e-15
UniRef50_Q5V0M7 Cluster: Ribonuclease R; n=6; Halobacteriaceae|R... 84 5e-15
UniRef50_Q98QL0 Cluster: Ribonuclease R; n=1; Mycoplasma pulmoni... 84 5e-15
UniRef50_A4EAC1 Cluster: Putative uncharacterized protein; n=1; ... 84 7e-15
UniRef50_A1AWH7 Cluster: Ribonuclease R; n=2; sulfur-oxidizing s... 84 7e-15
UniRef50_O13327 Cluster: Protein phosphatase Ssd1 homolog; n=6; ... 83 9e-15
UniRef50_A1K401 Cluster: Exoribonuclease II; n=32; Bacteria|Rep:... 83 1e-14
UniRef50_Q28VI9 Cluster: Ribonuclease R; n=27; Alphaproteobacter... 82 3e-14
UniRef50_Q7NB22 Cluster: VacB; n=1; Mycoplasma gallisepticum|Rep... 81 4e-14
UniRef50_Q6FZS0 Cluster: Exoribonuclease, VacB and RNase II fami... 81 4e-14
UniRef50_Q1DGB6 Cluster: 3'-5' exoribonuclease, VacB/RNase II fa... 81 4e-14
UniRef50_Q9BYK8 Cluster: Peroxisomal proliferator-activated rece... 81 4e-14
UniRef50_Q8F9Z7 Cluster: VacB protein; n=4; Leptospira|Rep: VacB... 81 5e-14
UniRef50_Q6AMK8 Cluster: Related to ribonuclease R; n=1; Desulfo... 81 5e-14
UniRef50_A6GC79 Cluster: Ribonuclease R; n=1; Plesiocystis pacif... 81 5e-14
UniRef50_A0Y7J7 Cluster: Ribonuclease R; n=1; marine gamma prote... 81 5e-14
UniRef50_A0LG74 Cluster: Exoribonuclease II; n=1; Syntrophobacte... 81 6e-14
UniRef50_Q6KI25 Cluster: Vacb-like ribonuclease II; n=2; cellula... 80 9e-14
UniRef50_Q6MQN7 Cluster: Ribonuclease R; n=1; Bdellovibrio bacte... 80 1e-13
UniRef50_Q3A2L6 Cluster: Exoribonuclease RNase R; n=1; Pelobacte... 79 2e-13
UniRef50_Q1NRA8 Cluster: Exoribonuclease II; n=1; delta proteoba... 79 2e-13
UniRef50_O84402 Cluster: Ribonuclease R; n=8; Chlamydiaceae|Rep:... 79 2e-13
UniRef50_Q14Q19 Cluster: Probable ribonuclease r protein; n=1; S... 78 5e-13
UniRef50_A7HAA8 Cluster: Ribonuclease R; n=4; cellular organisms... 78 5e-13
UniRef50_A0JYP3 Cluster: Ribonuclease II; n=3; Actinobacteria (c... 78 5e-13
UniRef50_A1IC27 Cluster: Exoribonuclease II; n=1; Candidatus Des... 77 6e-13
UniRef50_Q6ALZ0 Cluster: Related to ribonuclease R; n=1; Desulfo... 77 8e-13
UniRef50_A3VTQ9 Cluster: 3'-5' exoribonuclease, VacB and RNase I... 77 8e-13
UniRef50_UPI0000ECA91C Cluster: Peroxisomal proliferator-activat... 77 1e-12
UniRef50_Q1K2V6 Cluster: Ribonuclease R; n=1; Desulfuromonas ace... 77 1e-12
UniRef50_A3YBG8 Cluster: Ribonuclease R; n=1; Marinomonas sp. ME... 77 1e-12
UniRef50_Q0GXV6 Cluster: Putative ribonuclease; n=1; Lactococcus... 77 1e-12
UniRef50_Q30T59 Cluster: Exoribonuclease II; n=1; Thiomicrospira... 76 1e-12
UniRef50_A7AQY3 Cluster: RNB-like protein; n=1; Babesia bovis|Re... 76 1e-12
UniRef50_Q9A5J4 Cluster: Exoribonuclease, VacB and RNase II fami... 75 2e-12
UniRef50_Q3SL56 Cluster: Exoribonuclease II; n=1; Thiobacillus d... 75 2e-12
UniRef50_Q0EWH9 Cluster: Exoribonuclease II; n=1; Mariprofundus ... 75 2e-12
UniRef50_A6CFY5 Cluster: Ribonuclease R; n=1; Planctomyces maris... 75 2e-12
UniRef50_A3ZQN3 Cluster: Ribonuclease R; n=1; Blastopirellula ma... 75 2e-12
UniRef50_Q7UFR0 Cluster: Ribonuclease R; n=1; Pirellula sp.|Rep:... 75 3e-12
UniRef50_A6Q7D2 Cluster: Ribonuclease; n=1; Sulfurovum sp. NBC37... 75 3e-12
UniRef50_Q8EW72 Cluster: 3'-5' exoribonuclease RNase R; n=1; Myc... 75 4e-12
UniRef50_Q6F1Q7 Cluster: Virulence associated protein, ribonucle... 74 7e-12
UniRef50_Q4AAR6 Cluster: VACB-like ribonuclease II; n=5; Mycopla... 73 2e-11
UniRef50_Q0BU01 Cluster: Ribonuclease R; n=1; Granulibacter beth... 73 2e-11
UniRef50_A4IWL1 Cluster: Ribonuclease R; n=11; Francisella tular... 73 2e-11
UniRef50_P57628 Cluster: Ribonuclease R; n=2; Buchnera aphidicol... 73 2e-11
UniRef50_Q0AQ64 Cluster: Ribonuclease R; n=3; Rhodobacterales|Re... 72 2e-11
UniRef50_UPI00006A279F Cluster: Peroxisomal proliferator-activat... 72 3e-11
UniRef50_Q7MQZ6 Cluster: RIBONUCLEASE; n=2; Epsilonproteobacteri... 71 4e-11
UniRef50_Q3IK27 Cluster: Cold-shock RNAse R; n=13; Gammaproteoba... 71 4e-11
UniRef50_A6RWQ8 Cluster: Putative uncharacterized protein; n=1; ... 71 7e-11
UniRef50_Q2JH83 Cluster: Acetazolamide conferring resistance pro... 70 1e-10
UniRef50_UPI0000F1E528 Cluster: PREDICTED: similar to KIAA1769 p... 69 2e-10
UniRef50_UPI00003824E3 Cluster: COG0557: Exoribonuclease R; n=1;... 69 2e-10
UniRef50_Q0JHU4 Cluster: Os01g0841800 protein; n=4; Oryza sativa... 69 2e-10
UniRef50_A1SI92 Cluster: Ribonuclease II; n=1; Nocardioides sp. ... 69 3e-10
UniRef50_Q1N135 Cluster: Exoribonuclease R; n=1; Oceanobacter sp... 68 5e-10
UniRef50_Q1D4N8 Cluster: Ribonuclease R; n=3; Deltaproteobacteri... 68 5e-10
UniRef50_Q46363 Cluster: Acetazolamide conferring resistance pro... 68 5e-10
UniRef50_A7RTS2 Cluster: Predicted protein; n=1; Nematostella ve... 67 9e-10
UniRef50_Q8YXH3 Cluster: Zam protein; n=6; Cyanobacteria|Rep: Za... 66 1e-09
UniRef50_A5K6D1 Cluster: Putative uncharacterized protein; n=1; ... 66 2e-09
UniRef50_Q1AVL2 Cluster: Exoribonuclease II; n=1; Rubrobacter xy... 65 3e-09
UniRef50_A6DBI2 Cluster: RNB-like protein; n=1; Caminibacter med... 65 3e-09
UniRef50_Q29XV9 Cluster: Possible RNAase; n=17; Campylobacter|Re... 65 3e-09
UniRef50_Q9RYD0 Cluster: Ribonuclease II family protein; n=1; De... 64 5e-09
UniRef50_Q2S7B5 Cluster: Exoribonuclease R; n=1; Hahella chejuen... 64 6e-09
UniRef50_Q2RPE7 Cluster: Ribonuclease R; n=7; Alphaproteobacteri... 64 6e-09
UniRef50_Q7REV4 Cluster: Rhoptry protein; n=4; Plasmodium (Vinck... 64 8e-09
UniRef50_Q7R054 Cluster: GLP_56_56502_53413; n=1; Giardia lambli... 64 8e-09
UniRef50_Q6SG71 Cluster: RNB-like family protein; n=4; Bacteria|... 63 1e-08
UniRef50_Q4XZG1 Cluster: Putative uncharacterized protein; n=1; ... 63 1e-08
UniRef50_Q8NNG9 Cluster: Exoribonucleases; n=5; Corynebacterium|... 63 1e-08
UniRef50_A6DIQ3 Cluster: Exoribonuclease, VacB/RNB family protei... 63 1e-08
UniRef50_A5E347 Cluster: Protein SSD1; n=1; Lodderomyces elongis... 63 1e-08
UniRef50_A4CUF3 Cluster: Exoribonuclease II; n=4; Synechococcus|... 62 2e-08
UniRef50_A6F5G1 Cluster: Exoribonuclease R; n=1; Marinobacter al... 62 3e-08
UniRef50_Q4T9U5 Cluster: Chromosome undetermined SCAF7493, whole... 61 6e-08
UniRef50_Q7VIS0 Cluster: Putative uncharacterized protein; n=1; ... 61 6e-08
UniRef50_A4BI97 Cluster: Exoribonuclease R; n=1; Reinekea sp. ME... 61 6e-08
UniRef50_A1U792 Cluster: VacB and RNase II family 3'-5' exoribon... 61 6e-08
UniRef50_P75529 Cluster: Ribonuclease R; n=5; Mycoplasma|Rep: Ri... 60 7e-08
UniRef50_Q9KLE1 Cluster: Exoribonuclease 2; n=37; Bacteria|Rep: ... 60 7e-08
UniRef50_A6F7X7 Cluster: Exoribonuclease II; n=1; Moritella sp. ... 60 1e-07
UniRef50_P73177 Cluster: Uncharacterized ribonuclease sll1290; n... 60 1e-07
UniRef50_A2QYG4 Cluster: Contig An12c0030, complete genome; n=7;... 59 2e-07
UniRef50_P24276 Cluster: Protein SSD1; n=6; Saccharomycetales|Re... 59 2e-07
UniRef50_Q3AVJ3 Cluster: Exoribonuclease II; n=3; Synechococcus|... 58 3e-07
UniRef50_Q7VBX3 Cluster: Exoribonuclease R/ribonuclease II; n=1;... 58 4e-07
UniRef50_Q7U6W2 Cluster: Probable ribonuclease II; n=3; Cyanobac... 58 5e-07
UniRef50_A5GLA4 Cluster: Exoribonuclease R/ribonuclease II; n=2;... 58 5e-07
UniRef50_Q010V1 Cluster: Ribonuclease II; n=2; Ostreococcus|Rep:... 57 7e-07
UniRef50_Q5SI46 Cluster: Ribonuclease II family protein; n=3; De... 57 9e-07
UniRef50_Q2JIR4 Cluster: Exoribonuclease, VacB/RNB family; n=3; ... 57 9e-07
UniRef50_A1VBI0 Cluster: Ribonuclease R; n=3; Desulfovibrio|Rep:... 57 9e-07
UniRef50_Q7RID0 Cluster: RNB-like protein, putative; n=8; Plasmo... 57 9e-07
UniRef50_Q6NQJ6 Cluster: At5g02250; n=3; core eudicotyledons|Rep... 56 2e-06
UniRef50_A4FA45 Cluster: Ribonuclease R; n=4; Actinomycetales|Re... 55 3e-06
UniRef50_Q21LP7 Cluster: VacB and RNase II family 3'-5' exoribon... 55 4e-06
UniRef50_Q1MQS9 Cluster: Exoribonuclease R; n=1; Lawsonia intrac... 55 4e-06
UniRef50_A0Y8Y7 Cluster: Exoribonuclease R; n=1; marine gamma pr... 54 5e-06
UniRef50_Q5CV75 Cluster: Ssd1p/F48E8.6-like RNAseII; n=2; Crypto... 54 5e-06
UniRef50_Q5MZZ6 Cluster: Protein conferring resistance to acetaz... 54 6e-06
UniRef50_Q4XFQ2 Cluster: Putative uncharacterized protein; n=1; ... 54 8e-06
UniRef50_P44440 Cluster: Exoribonuclease 2; n=21; Pasteurellacea... 53 1e-05
UniRef50_P57354 Cluster: Exoribonuclease 2; n=6; Gammaproteobact... 53 1e-05
UniRef50_A3RLY2 Cluster: Chloroplast ribonuclease; n=1; Chlamydo... 52 3e-05
UniRef50_Q54IW8 Cluster: Putative uncharacterized protein; n=1; ... 52 3e-05
UniRef50_Q82U76 Cluster: Ribonuclease II domain; n=5; Betaproteo... 51 5e-05
UniRef50_A6DTA8 Cluster: Putative ribonuclease R; n=1; Lentispha... 51 5e-05
UniRef50_A3S2U2 Cluster: Exoribonuclease R/ribonuclease II; n=1;... 51 5e-05
UniRef50_A1WBZ0 Cluster: Ribonuclease II; n=9; Burkholderiales|R... 50 8e-05
UniRef50_O74454 Cluster: Protein sts5; n=1; Schizosaccharomyces ... 50 8e-05
UniRef50_A6PKV3 Cluster: Ribonuclease II; n=1; Victivallis vaden... 50 1e-04
UniRef50_Q1MTN7 Cluster: 3'-5' exonuclease for RNA 3' ss-tail; n... 50 1e-04
UniRef50_Q9K185 Cluster: Ribonuclease II-related protein; n=6; N... 50 1e-04
UniRef50_Q129F3 Cluster: Exoribonuclease II; n=6; cellular organ... 50 1e-04
UniRef50_Q553P9 Cluster: Putative uncharacterized protein; n=1; ... 50 1e-04
UniRef50_A5GTC0 Cluster: Exoribonuclease R/ribonuclease II; n=1;... 49 2e-04
UniRef50_A0Z0P5 Cluster: Exoribonuclease R; n=3; Bacteria|Rep: E... 49 2e-04
UniRef50_Q4C5D6 Cluster: Exoribonuclease II; n=6; Chroococcales|... 49 2e-04
UniRef50_Q4JWH5 Cluster: Putative ribonuclease R; n=1; Corynebac... 48 3e-04
UniRef50_A4SVC2 Cluster: Ribonuclease II; n=1; Polynucleobacter ... 48 4e-04
UniRef50_A7I6H4 Cluster: Ribonuclease II; n=1; Candidatus Methan... 48 6e-04
UniRef50_A7BS42 Cluster: Exoribonuclease II; n=1; Beggiatoa sp. ... 47 7e-04
UniRef50_P59107 Cluster: Exoribonuclease 2; n=42; Gammaproteobac... 47 7e-04
UniRef50_A3TM00 Cluster: Putative ribonuclease R; n=1; Janibacte... 47 0.001
UniRef50_A3PCZ0 Cluster: Probable ribonuclease II; n=5; Prochlor... 46 0.001
UniRef50_A6R486 Cluster: Predicted protein; n=1; Ajellomyces cap... 46 0.001
UniRef50_A5DYU5 Cluster: Putative uncharacterized protein; n=1; ... 46 0.001
UniRef50_Q98NP8 Cluster: Ribonuclease; n=3; Bacteria|Rep: Ribonu... 45 0.003
UniRef50_Q59Y80 Cluster: Putative uncharacterized protein MSU1; ... 45 0.004
UniRef50_P47950 Cluster: Mitochondrial protein cyt-4; n=1; Neuro... 45 0.004
UniRef50_Q8I389 Cluster: Putative uncharacterized protein PFI029... 44 0.005
UniRef50_Q5K8S9 Cluster: Exoribonuclease II, putative; n=1; Filo... 44 0.005
UniRef50_P56123 Cluster: Ribonuclease R; n=4; Helicobacter|Rep: ... 44 0.005
UniRef50_Q8DHS2 Cluster: Protein conferring resistance to acetaz... 44 0.009
UniRef50_A1SWZ6 Cluster: Exoribonuclease II; n=2; Psychromonas|R... 43 0.012
UniRef50_A4QVD5 Cluster: Putative uncharacterized protein; n=1; ... 43 0.012
UniRef50_A6GR92 Cluster: Putative uncharacterized protein; n=1; ... 43 0.016
UniRef50_UPI00006CD88E Cluster: RNB-like protein; n=3; Tetrahyme... 42 0.028
UniRef50_Q5BX05 Cluster: SJCHGC08307 protein; n=1; Schistosoma j... 42 0.028
UniRef50_Q6CUB0 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 42 0.028
UniRef50_Q4P7A2 Cluster: Putative uncharacterized protein; n=1; ... 42 0.028
UniRef50_Q46KZ5 Cluster: Exoribonuclease R/ribonuclease II; n=2;... 41 0.048
UniRef50_Q39JS1 Cluster: Ribonuclease II; n=39; Burkholderiales|... 41 0.064
UniRef50_Q0V5W7 Cluster: Putative uncharacterized protein; n=1; ... 40 0.11
UniRef50_Q2HG64 Cluster: Putative uncharacterized protein; n=1; ... 40 0.15
UniRef50_A3LU45 Cluster: 3'-5' RNA exonuclease complex component... 40 0.15
UniRef50_P39112 Cluster: Exoribonuclease II, mitochondrial precu... 40 0.15
UniRef50_Q1MRX1 Cluster: Exoribonuclease R; n=1; Lawsonia intrac... 39 0.26
UniRef50_Q1DPE6 Cluster: Putative uncharacterized protein; n=1; ... 39 0.26
UniRef50_Q73MY5 Cluster: RNB-like family protein; n=1; Treponema... 38 0.34
UniRef50_Q01V71 Cluster: Exoribonuclease II; n=1; Solibacter usi... 38 0.60
UniRef50_A1AXH8 Cluster: Ribonuclease II; n=2; sulfur-oxidizing ... 38 0.60
UniRef50_Q5P6K1 Cluster: Ribonuclease II; n=3; Rhodocyclaceae|Re... 37 0.79
UniRef50_Q8PZF0 Cluster: Exoribonuclease II; n=1; Methanosarcina... 37 0.79
UniRef50_Q2FP21 Cluster: Ribonuclease II; n=1; Methanospirillum ... 37 0.79
UniRef50_Q69YG5 Cluster: Putative uncharacterized protein DKFZp4... 37 1.0
UniRef50_Q6BW11 Cluster: Debaryomyces hansenii chromosome B of s... 37 1.0
UniRef50_O83783 Cluster: Exoribonuclease II; n=1; Treponema pall... 36 2.4
UniRef50_A5DGD7 Cluster: Putative uncharacterized protein; n=1; ... 36 2.4
UniRef50_Q58454 Cluster: Uncharacterized protein MJ1054 (EC 1.1.... 36 2.4
UniRef50_Q99369 Cluster: Family of serine hydrolases 3; n=3; Sac... 35 4.2
UniRef50_Q726E6 Cluster: RNB-like family protein; n=3; Desulfovi... 34 5.6
UniRef50_A7JFK7 Cluster: Ribonuclease II family protein; n=10; F... 34 5.6
UniRef50_A2EA23 Cluster: Putative uncharacterized protein; n=9; ... 34 5.6
UniRef50_A6RT52 Cluster: Predicted protein; n=1; Botryotinia fuc... 34 5.6
UniRef50_Q7NKM9 Cluster: Gll1448 protein; n=1; Gloeobacter viola... 34 7.3
UniRef50_Q9HPA2 Cluster: Htr17 transducer; n=1; Halobacterium sa... 33 9.7
UniRef50_Q2LSK9 Cluster: Probable chemoreceptor glutamine deamid... 33 9.7
>UniRef50_Q960A7 Cluster: SD10981p; n=13; Coelomata|Rep: SD10981p -
Drosophila melanogaster (Fruit fly)
Length = 982
Score = 438 bits (1080), Expect = e-122
Identities = 216/381 (56%), Positives = 270/381 (70%), Gaps = 14/381 (3%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKT----EDP-ENILEEETVLLD 57
IL+QG +NRA+DGD+VA+E+ P+ EW PS IVLE+K E P E ++E +L+
Sbjct: 276 ILIQGRESLNRAVDGDLVAVELLPEAEWSAPSEIVLEEKNVYADEVPSEERAKDENEMLN 335
Query: 58 AAKPVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETR 117
+ E TPTG++VGI+RRKWRQYCGIL PS RH+F PA+++IPR+RIETR
Sbjct: 336 QVRAAALSAERTPTGRIVGIVRRKWRQYCGILQPSLIEDTNRHIFVPADRKIPRIRIETR 395
Query: 118 QSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAV 177
Q+ +L +QRI+V +D+WPRNSRYP GH VR P D ENEVILLEHDVPH +FS+ V
Sbjct: 396 QAAMLQNQRIIVTIDTWPRNSRYPHGHFVRSLGPLGDMATENEVILLEHDVPHCKFSDEV 455
Query: 178 LNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGV 237
L+ LP WTI +E+ KRVDLRD+ +CSVDPPGCTDIDDALH R L + + EVGV
Sbjct: 456 LSFLPKMPWTITDEDYSKRVDLRDLYICSVDPPGCTDIDDALHCRELPNGN----LEVGV 511
Query: 238 HIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLA 297
HIADV+HF++P ALD EAA+R TTVYLV +RIDMVP +S + + G ER A
Sbjct: 512 HIADVSHFIRPGNALDMEAAARGTTVYLVGKRIDMVPELLSSN-----LCSLVGGVERFA 566
Query: 298 FSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXX 357
FSCVWE+D ANVLS +FHKS+IKSK AMTYEEAQ IDD+++++EIAKS
Sbjct: 567 FSCVWEVDNEANVLSKRFHKSVIKSKRAMTYEEAQNIIDDATQQNEIAKSLRNLNRLAKI 626
Query: 358 XXXXXXDSGALLLASPEIRFQ 378
D+GAL+LASPEIRFQ
Sbjct: 627 LKKRRMDNGALVLASPEIRFQ 647
>UniRef50_Q9Y2L1 Cluster: Exosome complex exonuclease RRP44; n=35;
Coelomata|Rep: Exosome complex exonuclease RRP44 - Homo
sapiens (Human)
Length = 958
Score = 400 bits (984), Expect = e-110
Identities = 194/376 (51%), Positives = 258/376 (68%), Gaps = 12/376 (3%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENI-LEEETVLLDAAKP 61
I+LQG +NRA+ DIVA+E+ PK +W PS++VL D+ ++ E++ EEET + K
Sbjct: 275 IILQGLKHLNRAVHEDIVAVELLPKSQWVAPSSVVLHDEGQNEEDVEKEEETERM--LKT 332
Query: 62 VDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEI 121
++ + PTG+VVGII+R WR YCG+L S + RHLFTPA+KRIPR+RIETRQ+
Sbjct: 333 AVSEKMLKPTGRVVGIIKRNWRPYCGMLSKSDIKESRRHLFTPADKRIPRIRIETRQAST 392
Query: 122 LASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCL 181
L +RI+VA+D WPRNSRYP GH VR +K+ E EV+LLEHDVPH FS+AVL+ L
Sbjct: 393 LEGRRIIVAIDGWPRNSRYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFL 452
Query: 182 PPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIAD 241
P W+I E++ + R DLR +C+CSVDPPGCTDIDDALH R L + + EVGVHIAD
Sbjct: 453 PKMPWSITEKDMKNREDLRHLCICSVDPPGCTDIDDALHCRELENGN----LEVGVHIAD 508
Query: 242 VTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCV 301
V+HF++P ALD+E+A R TTVYL ++RIDMVP +S + + C +RLAFSC+
Sbjct: 509 VSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSN-----LCSLKCDVDRLAFSCI 563
Query: 302 WEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXXXXXX 361
WEM+ NA +L TKF KS+I SKA++TY EAQ+ ID ++ D+I S
Sbjct: 564 WEMNHNAEILKTKFTKSVINSKASLTYAEAQLRIDSANMNDDITTSLRGLNKLAKILKKR 623
Query: 362 XXDSGALLLASPEIRF 377
+ GAL L+SPE+RF
Sbjct: 624 RIEKGALTLSSPEVRF 639
>UniRef50_Q17632 Cluster: Probable exosome complex exonuclease
RRP44; n=2; Caenorhabditis|Rep: Probable exosome complex
exonuclease RRP44 - Caenorhabditis elegans
Length = 1029
Score = 368 bits (906), Expect = e-100
Identities = 190/376 (50%), Positives = 246/376 (65%), Gaps = 19/376 (5%)
Query: 12 NRAIDGDIVAIEIFPKEEWRKPSN-IVLED-----KT-EDPENILEEETVLLDAAKPVDN 64
NRA++GD VA+++ P+++W P I L D KT +D N EE D K +
Sbjct: 285 NRAVNGDTVAVQLLPEDQWTAPEKKIRLRDVEEYVKTADDMGNEDEENDDENDEPKAKKS 344
Query: 65 DDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEILAS 124
T KVVGII+R WR+YCG+L+PS GA RHLF PAE+ IPR+RIET Q+E L+
Sbjct: 345 KKMTVSTAKVVGIIKRNWREYCGMLLPSTVKGARRHLFCPAERLIPRIRIETEQAETLSQ 404
Query: 125 QRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPN 184
QRI+VA+D WPR+S+YPLGH VR ++ ENEV+LLEHD+PHA FSE+VL+CLP
Sbjct: 405 QRIVVAIDHWPRDSKYPLGHYVRSIGEMGSRETENEVLLLEHDIPHAPFSESVLDCLPRE 464
Query: 185 DWTIPEEERQ---KRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIAD 241
+W E + RVDLRD+ +CSVDP GCTDIDDALH +++G +EVGVHIAD
Sbjct: 465 EWEPDLTENRGPLPRVDLRDLTICSVDPLGCTDIDDALHCKQIGED----LFEVGVHIAD 520
Query: 242 VTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCV 301
VTHFV+P TA+D EAA R TTVYL DRRIDM+P +S + + EER AFSC+
Sbjct: 521 VTHFVRPGTAIDDEAALRGTTVYLCDRRIDMLPCLLSSN-----LCSLRGEEERYAFSCI 575
Query: 302 WEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXXXXXX 361
W M +A++ S K+HKS+IKSKAA+TYE+AQ IDD ++++A
Sbjct: 576 WTMTSSADIQSVKYHKSLIKSKAALTYEKAQEIIDDPKEQNDVALGLRGLMKLSKVLNAR 635
Query: 362 XXDSGALLLASPEIRF 377
+GAL LAS E+RF
Sbjct: 636 RTGNGALTLASSEVRF 651
>UniRef50_Q6ZQ07 Cluster: MKIAA1008 protein; n=4; Deuterostomia|Rep:
MKIAA1008 protein - Mus musculus (Mouse)
Length = 429
Score = 357 bits (877), Expect = 4e-97
Identities = 173/325 (53%), Positives = 232/325 (71%), Gaps = 12/325 (3%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENI-LEEETVLLDAAKP 61
IL+QG +NRA+ DIVA+E+ P+ +W PS++VL+D+ ++ +++ +EE LL K
Sbjct: 116 ILIQGIKHLNRAVHEDIVAVELLPRSQWVAPSSVVLDDEGQNEDDVEKDEERELL--LKT 173
Query: 62 VDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEI 121
++ + PTG+VVGII+R WR YCG+L S + RHLFTPA+KRIPR+RIETRQ+
Sbjct: 174 AVSEKMLRPTGRVVGIIKRNWRPYCGMLSKSDIKESRRHLFTPADKRIPRIRIETRQASA 233
Query: 122 LASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCL 181
L +RI+VA+D WPRNSRYP GH V+ +K+ E EV+LLEHDVPH FS+AVL+ L
Sbjct: 234 LEGRRIIVAIDGWPRNSRYPNGHFVKNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFL 293
Query: 182 PPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIAD 241
P W+I EE+ + R DLR +CVCSVDPPGCTDIDDALH R L S+G EVGVHIAD
Sbjct: 294 PRMPWSITEEDMKNREDLRHLCVCSVDPPGCTDIDDALHCREL--SNG--NLEVGVHIAD 349
Query: 242 VTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCV 301
V+HF++P ALD+E+A R TTVYL ++RIDMVP +S + + +RLAFSC+
Sbjct: 350 VSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSN-----LCSLRSNVDRLAFSCI 404
Query: 302 WEMDENANVLSTKFHKSIIKSKAAM 326
WEM+ NA +L T+F KS+I SK ++
Sbjct: 405 WEMNHNAEILKTRFTKSVINSKVSV 429
>UniRef50_Q4P861 Cluster: Putative uncharacterized protein; n=2;
Basidiomycota|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 1012
Score = 326 bits (800), Expect = 8e-88
Identities = 182/409 (44%), Positives = 251/409 (61%), Gaps = 46/409 (11%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLED----KTEDPE-----------N 47
ILL G +NRA+DGDIVA+++ PKE+W+ + V++ K +D E +
Sbjct: 306 ILLVGRESMNRAVDGDIVAVQMLPKEQWKSATEEVIDADAALKDDDAEAGNGDGDGEADD 365
Query: 48 ILEEETVLLDAAKPVDND----DEITPTGKVVGIIRRKWRQYCGILMPSKFH-------G 96
+E +AA N E PTGKVVGI+RR WR Y + + + G
Sbjct: 366 DIEARLARKEAADAEANARSSRGEPQPTGKVVGIVRRNWRSYVAHVDVNSVNSSALSSLG 425
Query: 97 ATRHLFTPAEKRIPRVRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKD 156
A TP ++++PR+RI TRQ++ L Q+IL+ALD+W SRYP GH VR K+
Sbjct: 426 AQTVFATPVDRKLPRIRIRTRQAKDLMGQKILIALDAWRPTSRYPDGHFVRALGQAESKE 485
Query: 157 AENEVILLEHDVPHARFSEAVLNCLPP--NDWTIPEEER-----QKRVDLRDVCVCSVDP 209
AE E +LLEHDVP+ FS+A+L+CLPP + W +P ++ + RVD+RD +CS+DP
Sbjct: 486 AEQESLLLEHDVPYRPFSKAILDCLPPEGDSWVVPPKDMTHHAWRDRVDMRDEIICSIDP 545
Query: 210 PGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRR 269
PGC DIDDALHA++L + + E GVHIADV++FV+PD +D EAASR TTVYLVD+R
Sbjct: 546 PGCQDIDDALHAKQLPNGN----IEAGVHIADVSYFVRPDNPMDAEAASRGTTVYLVDKR 601
Query: 270 IDMVPG--NVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMT 327
IDM+P ++ +++ Y+ ERLAFS VWEM +A +++ +FHKS+I SKAA T
Sbjct: 602 IDMLPHLLGTNLCSLRPYV-------ERLAFSAVWEMTPDAEIVNVRFHKSVIASKAAFT 654
Query: 328 YEEAQIAIDDSSRKDEIAKSXXXXXXXXXXXXXXXXDSGALLLASPEIR 376
YEEAQ+ DD+S+ D I KS D+GAL LASPE+R
Sbjct: 655 YEEAQLRKDDASKNDAITKSIRLLNSLAKKLKQKRMDAGALNLASPEVR 703
>UniRef50_Q0CT74 Cluster: Mitotic control protein dis3; n=16;
Ascomycota|Rep: Mitotic control protein dis3 -
Aspergillus terreus (strain NIH 2624)
Length = 1034
Score = 319 bits (783), Expect = 9e-86
Identities = 177/406 (43%), Positives = 251/406 (61%), Gaps = 42/406 (10%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDK---------TEDPENIL--EE 51
+++ G NRAI GD+V IE+ PK++W+ PS ++E++ +ED E ++ E
Sbjct: 300 LIILGRENSNRAISGDVVVIEVLPKDQWKAPSTKIVEEEAVTKNDNPESEDTETVVTERE 359
Query: 52 ETVLLDAAKPV---DNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGAT-------RHL 101
L + K +++ + PT KVVG+++R WRQY G + S GA + +
Sbjct: 360 RKALQEEVKKAHGKNSEGKPQPTAKVVGVVKRNWRQYVGHV-DSGSTGAQGTSGRRQQTV 418
Query: 102 FT-PAEKRIPRVRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENE 160
F P +KR+P++R+ TRQ+ L QRILV +D+W R+SRYP GH +R K AE E
Sbjct: 419 FVLPMDKRVPKIRVRTRQAADLLGQRILVTIDAWDRDSRYPTGHFIRSLGELETKGAETE 478
Query: 161 VILLEHDVPHARFSEAVLNCLPP--NDWTIPEEER----QKRVDLRDVCVCSVDPPGCTD 214
+LLE+DV + F +AVL+CLPP +DW +P + + R DLRD+ +CS+DPPGC D
Sbjct: 479 ALLLEYDVQYKPFPKAVLDCLPPEGHDWRVPASKDNVGWKGRRDLRDLLICSIDPPGCQD 538
Query: 215 IDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVP 274
IDDALHAR L + + +EVGVHIADV+HFVKP+ A+D EA+ R TTVYLVD+RIDM+P
Sbjct: 539 IDDALHARPLPNGN----FEVGVHIADVSHFVKPNNAMDLEASLRGTTVYLVDKRIDMLP 594
Query: 275 G--NVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQ 332
+ ++K Y+ ER AFS +WEM NA V+S F KS+I+S+ A +YE+AQ
Sbjct: 595 HLLGTDLCSLKPYV-------ERYAFSVLWEMTPNAEVVSADFTKSVIRSREAFSYEQAQ 647
Query: 333 IAIDDSSRKDEIAKSXXXXXXXXXXXXXXXXDSGALLLASPEIRFQ 378
IDD S+KDE+ +S D+GAL LASPE+R +
Sbjct: 648 KRIDDPSQKDELTESMRTLLRFSKILRQKRMDAGALNLASPEVRIE 693
>UniRef50_P37202 Cluster: Mitotic control protein dis3; n=1;
Schizosaccharomyces pombe|Rep: Mitotic control protein
dis3 - Schizosaccharomyces pombe (Fission yeast)
Length = 970
Score = 318 bits (781), Expect = 2e-85
Identities = 172/394 (43%), Positives = 241/394 (61%), Gaps = 34/394 (8%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKPV 62
+L+ G +NRA+ GDIV I+I P+++W+ + E+ +D E+++ D+A+ +
Sbjct: 292 VLVSGRENLNRAVQGDIVCIQILPQDQWKTEA----EEIADDDEDVVVSTAAEPDSAR-I 346
Query: 63 DNDDEIT-----PTGKVVGIIRRKWRQYCG-----ILMPSKFHGATRHLFTPAEKRIPRV 112
++ + IT PT KVVGI++R WR Y G + SK L TP ++R+P++
Sbjct: 347 NDLELITKRNAHPTAKVVGILKRNWRPYVGHVDNATIAQSKGGSQQTVLLTPMDRRVPKI 406
Query: 113 RIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHAR 172
R TRQ+ L +RI+VA+D W +SRYP GH VR K+AE E +LLE+DV H
Sbjct: 407 RFRTRQAPRLVGRRIVVAIDLWDASSRYPEGHFVRDLGEMETKEAETEALLLEYDVQHRP 466
Query: 173 FSEAVLNCLPP--NDWTIPEEER----QKRVDLRDVCVCSVDPPGCTDIDDALHARRLGS 226
F +AVL+CLP ++W +P ++ + R D RD +CS+DPPGC DIDDALHA L +
Sbjct: 467 FPKAVLDCLPEEGHNWKVPADKTHPLWKNRKDFRDKLICSIDPPGCQDIDDALHACVLPN 526
Query: 227 SDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPG--NVSVTTVKY 284
+ YEVGVHIADVTHFVKP+T++D EAASR TTVYLVD+RIDM+P + +++
Sbjct: 527 GN----YEVGVHIADVTHFVKPNTSMDSEAASRGTTVYLVDKRIDMLPMLLGTDLCSLRP 582
Query: 285 YILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEI 344
Y+ ER AFSC+WEMDENAN++ F KS+I SK A +Y +AQ IDD +D +
Sbjct: 583 YV-------ERFAFSCIWEMDENANIIKVHFTKSVIASKEAFSYADAQARIDDQKMQDPL 635
Query: 345 AKSXXXXXXXXXXXXXXXXDSGALLLASPEIRFQ 378
+ D GAL LASPE+R Q
Sbjct: 636 TQGMRVLLKLSKILKQKRMDEGALNLASPEVRIQ 669
>UniRef50_Q54BH9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1006
Score = 317 bits (778), Expect = 4e-85
Identities = 169/391 (43%), Positives = 243/391 (62%), Gaps = 35/391 (8%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVL---EDKTEDPENILEEETVLLDAA 59
IL+QG INRA+DGDIVA+E+F + +W PS +++ E ED ++I ++ +
Sbjct: 274 ILIQGIENINRAVDGDIVAVELFDQSKWNTPSTLIMLENEGVEEDDDSIAKDSLI----- 328
Query: 60 KPVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATR-------HL--FTPAEKRIP 110
+ PTGKVVGII+R W+ YCG + + T H F P +KRIP
Sbjct: 329 ------SKKQPTGKVVGIIKRNWKPYCGAVEFKQDDNNTTTKTSTGLHFLYFMPIDKRIP 382
Query: 111 RVRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPH 170
++RI++RQ L +RI+VA+D W +NS+YP GH V+ P DK+ E++V+LL+ D+PH
Sbjct: 383 KIRIKSRQVSNLIGKRIVVAIDQWDKNSKYPSGHFVKDLGPLGDKETESQVLLLQFDIPH 442
Query: 171 ARFSEAVLNCLPPNDW--TIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSD 228
F AV+ CLP D + + R DLR C+ SVDPPGCTDIDDALH + LG
Sbjct: 443 HPFGAAVMKCLPSPDIMDRVTSADMVGRKDLRKECIFSVDPPGCTDIDDALHIKDLGK-- 500
Query: 229 GLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQ 288
EVGVHIADV+HFV+ TA+D+EAA+RST+VYLVDRRIDM+PG +S +
Sbjct: 501 --GIMEVGVHIADVSHFVQEGTAIDEEAANRSTSVYLVDRRIDMLPGELSGN-----LCS 553
Query: 289 VSCGEERLAFSCVWEMDEN-ANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKS 347
+ +R AFSC+W+++++ +++ ++ KSII+S A++TYE+AQI IDD S+ D+I +
Sbjct: 554 LMSNVDRFAFSCIWKINQHTGEIIAVEYTKSIIRSCASLTYEQAQIRIDDKSQNDQITVN 613
Query: 348 XXXXXXXXXXXXXXXXDSGALLLASPEIRFQ 378
D GAL LASP+++F+
Sbjct: 614 LRNLNSLAKILRKQRFDRGALYLASPQVKFK 644
>UniRef50_UPI000049906F Cluster: exosome complex exonuclease; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: exosome complex
exonuclease - Entamoeba histolytica HM-1:IMSS
Length = 901
Score = 312 bits (767), Expect = 8e-84
Identities = 171/383 (44%), Positives = 231/383 (60%), Gaps = 16/383 (4%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKPV 62
IL+ G INRA++GDIVA+++ PK++W+K S+ + D ++ + I TV +D A V
Sbjct: 252 ILVSGLEDINRAVEGDIVALQLLPKDQWKKESHTINNDYEKNEKEI--NNTVHMDNAMEV 309
Query: 63 DNDDEITPTGKVVGIIRRKWRQYCG-ILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEI 121
+ PTGK+VGII+R W+ G I S +T LF P +KR P +RI+ R
Sbjct: 310 EGK----PTGKIVGIIKRNWKPLPGYIKQESSGSYSTNLLFLPTDKRFPPIRIKARDPAK 365
Query: 122 LASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCL 181
LASQRILV +D+W S+YP GH V DK +E E IL H++PH F E VL CL
Sbjct: 366 LASQRILVLIDAWDTTSKYPTGHYVATLGNVGDKASETEAILELHEIPHYEFPEIVLKCL 425
Query: 182 PPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIAD 241
P + I E+ + R D R VCS+DPPGCTDIDDALH + L + + YE+GVHIAD
Sbjct: 426 PVLPFEITEDYLKGRRDFRKENVCSIDPPGCTDIDDALHCKILPNGN----YEIGVHIAD 481
Query: 242 VTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCV 301
V+ FVKP TALD+EAA R TTVYL DRRIDM+P +T V I ++ + L FS V
Sbjct: 482 VSCFVKPHTALDEEAAKRGTTVYLADRRIDMLP--KPLTEV---ICSITQNTDTLTFSVV 536
Query: 302 WEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXXXXXX 361
WE+D++ANV++ +HK I+ S A Y +AQ IDD S + E A+
Sbjct: 537 WELDKDANVINCTYHKGIVHSYRAYAYGQAQSVIDDKSNQSEYAQQLRAMLMLSKKLKQK 596
Query: 362 XXDSGALLLASPEIRFQFFKKLN 384
D+GAL+LAS EI+ + ++ N
Sbjct: 597 RIDAGALMLASSEIKIEKDEQFN 619
>UniRef50_A7PKV4 Cluster: Chromosome chr7 scaffold_20, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr7 scaffold_20, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 943
Score = 306 bits (751), Expect = 7e-82
Identities = 174/398 (43%), Positives = 236/398 (59%), Gaps = 31/398 (7%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDP--ENILEEETVLL---- 56
I++ G +NRA DGD+VA+E+ P+++W++ ++ + D+ P E+ EE+ L+
Sbjct: 262 IIIYGRGNMNRAFDGDVVAVELLPQDQWQEEKSLSIADEAFYPFAEDEEEEDVHLVPSSA 321
Query: 57 -DAAKPVDNDDEIT---------PTGKVVGIIRRKWRQYCGIL----MPSKFHGATRHLF 102
DA + D P+G+VVGII+R W YCG L MP+ G LF
Sbjct: 322 DDAPRNTDLAQGSVGGTKAVLCRPSGRVVGIIKRNWHSYCGSLEPMPMPAGNGGIAHALF 381
Query: 103 TPAEKRIPRVRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVI 162
++RIP++RI+TRQ L +RI+VA+DSW SRYP GH VR D+D E+EV+
Sbjct: 382 VSKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCLSRYPSGHYVRTIGEIGDRDTESEVV 441
Query: 163 LLEHDVPHARFSEAVLNCLPPNDWTIPEEERQK--RVDLRDVCVCSVDPPGCTDIDDALH 220
L+E+D+ FS VL CLPP W++ E+ R+DLR VCV SVDPPGC DIDDALH
Sbjct: 442 LIENDINSRPFSLQVLACLPPLPWSVSSEDLANPCRLDLRHVCVFSVDPPGCKDIDDALH 501
Query: 221 ARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVT 280
L + + +EVGVHIADVT+FV P T LD EAA R T+VYLV+RRIDM+P ++
Sbjct: 502 CTTLPNGN----FEVGVHIADVTNFVHPGTPLDDEAAQRGTSVYLVERRIDMLPKPLTED 557
Query: 281 TVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSR 340
I + ERLAFS +WEM A ++STK+ KSIIKS AA++Y EAQ +DDS
Sbjct: 558 -----ICSLRSDVERLAFSVIWEMTPQAEIISTKYTKSIIKSCAALSYIEAQARMDDSRL 612
Query: 341 KDEIAKSXXXXXXXXXXXXXXXXDSGALLLASPEIRFQ 378
D + + GAL LAS E++FQ
Sbjct: 613 MDPLTMDLRNMNALAKVMRLRRIERGALTLASAEVKFQ 650
>UniRef50_Q23DE7 Cluster: RNB-like protein; n=1; Tetrahymena
thermophila SB210|Rep: RNB-like protein - Tetrahymena
thermophila SB210
Length = 946
Score = 302 bits (741), Expect = 1e-80
Identities = 167/397 (42%), Positives = 239/397 (60%), Gaps = 31/397 (7%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIV--LEDKTEDPENILEE--------- 51
I + G +NRA+ GD++AIE+ P+ EW SN + ED+ ED +N+ E
Sbjct: 265 IKIIGQPNLNRALHGDLIAIELLPENEWIS-SNYMGDNEDEEEDFKNVHEAVKTNNSNKQ 323
Query: 52 -ETVLLDAAKPVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFH------GATRHLFTP 104
E L+ + + + + PTG+VVG+I+R R +CG + P + G F P
Sbjct: 324 LEEKYLNVVEKIKKLN-LNPTGRVVGVIKRIQRYFCGEVTPEAINLPNLPSGIELREFIP 382
Query: 105 AEKRIPRVRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILL 164
A+ R P + T L ++I + D+W ++S+YPLGH L + D AE +VILL
Sbjct: 383 ADGRFPHFYLRTTNGSQLQGKKIQIGFDNWSKSSKYPLGHFKMLIGDSGDTKAEGDVILL 442
Query: 165 EHDVPHARFSEAVLNCLPPND--WTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHAR 222
EH+V + FS+ VL+CLPP D W IP+ E +KRVDLR + VCS+DPPGC DIDDALH
Sbjct: 443 EHNVEYRAFSKQVLDCLPPQDDKWQIPQSEIKKRVDLRGINVCSIDPPGCKDIDDALHCI 502
Query: 223 RLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTV 282
L + + +EVGVHIADV++FV+PDTA+DKEA +R TTVYLVDRR DM+P ++ T
Sbjct: 503 SLPNGN----FEVGVHIADVSYFVRPDTAIDKEAQNRCTTVYLVDRRTDMLPKLLTET-- 556
Query: 283 KYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKD 342
+ + +RLAFS VW MD++AN++ T++HKSII+S A++ Y +AQ IDD +
Sbjct: 557 ---LCSLKDDGDRLAFSVVWVMDKDANIIETRYHKSIIRSVASLNYGKAQSMIDDVNDNS 613
Query: 343 EIAKSXXXXXXXXXXXXXXXXDSGALLLASPEIRFQF 379
E+ KS ++GAL LAS +++F F
Sbjct: 614 ELTKSIRNLNMLAKKLKQKRIENGALSLASTQVKFTF 650
>UniRef50_Q4DG23 Cluster: RRP44p homologue, putative; n=4;
Trypanosoma|Rep: RRP44p homologue, putative -
Trypanosoma cruzi
Length = 972
Score = 300 bits (736), Expect = 4e-80
Identities = 168/387 (43%), Positives = 223/387 (57%), Gaps = 34/387 (8%)
Query: 2 RILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKP 61
R+LL G +NRAI GDIVA+E+ P WR P +D EN E V
Sbjct: 275 RVLLPGRSNLNRAIHGDIVAVELLPVSSWRGP-----KDAKPLDENATEAAAVA------ 323
Query: 62 VDNDDEITPTGKVVGIIRRKWRQYCGIL----------MPSKFHGATRHLFTPAEKRIPR 111
P G+VVGI + R +CG + K GA LF P + RIPR
Sbjct: 324 ----GGYMPVGRVVGITSMERRPFCGSIDVEELTRLTASEGKISGAVSVLFQPKDNRIPR 379
Query: 112 VRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHA 171
+RI TR E L +R+ V +D WP + +P+GH V + DKD E +VILLE+DVPH
Sbjct: 380 IRISTRDLEYLKDKRLSVIIDDWPEYNSFPVGHYVEVLGTIGDKDTEAKVILLENDVPHY 439
Query: 172 RFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLA 231
FSEAV +CLP W++ ++E ++R+DLRD+CV SVDP GC DIDDALH R + +
Sbjct: 440 DFSEAVYDCLPKGQWSVSKDELERRLDLRDLCVVSVDPLGCRDIDDALHCRVVNENH--- 496
Query: 232 TYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSC 291
+EVGVHIADVTHF+ +TA+D+EAA RST+VYLVDRRI+M+P ++ + +
Sbjct: 497 -FEVGVHIADVTHFLHENTAMDEEAAKRSTSVYLVDRRINMLPQLLTEN-----LCSIVS 550
Query: 292 GEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXX 351
E+R AFS +WE DE NV+ F K++I+S+AA+ Y +AQ IDD + K EIA S
Sbjct: 551 NEDRYAFSILWEFDEEYNVVRDYFGKTVIRSRAALYYGDAQRMIDDVNDKSEIAVSLRHL 610
Query: 352 XXXXXXXXXXXXDSGALLLASPEIRFQ 378
GAL LAS E +F+
Sbjct: 611 MNISRHFKAMREKDGALFLASQEFKFK 637
>UniRef50_Q08162 Cluster: Exosome complex exonuclease RRP44; n=12;
Ascomycota|Rep: Exosome complex exonuclease RRP44 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 1001
Score = 297 bits (729), Expect = 3e-79
Identities = 170/415 (40%), Positives = 240/415 (57%), Gaps = 52/415 (12%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLE------------------DKTED 44
+L+ G +NRA +GD V +E+ P+ EW+ PS+IVL+ D E
Sbjct: 299 VLIVGQKNLNRAFNGDQVIVELLPQSEWKAPSSIVLDSEHFDVNDNPDIEAGDDDDNNES 358
Query: 45 PENIL----EEETVLLDAAKPVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFH---GA 97
N ++ +L A +I PT KVV I RR WRQY G L PS +
Sbjct: 359 SSNTTVISDKQRRLLAKDAMIAQRSKKIQPTAKVVYIQRRSWRQYVGQLAPSSVDPQSSS 418
Query: 98 TRHLFTPA-EKRIPRVRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKD 156
T+++F +K +P+VRI TR++ L +RI++++DSWP +YPLGH VR
Sbjct: 419 TQNVFVILMDKCLPKVRIRTRRAAELLDKRIVISIDSWPTTHKYPLGHFVRDLGTIESAQ 478
Query: 157 AENEVILLEHDVPHARFSEAVLNCLPP--NDWTIP-----------EEERQKRVDLRDVC 203
AE E +LLEHDV + FS+ VL CLP +DW P + KR DLRD
Sbjct: 479 AETEALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKL 538
Query: 204 VCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTV 263
+CS+DPPGC DIDDALHA++L + + +EVGVHIADVTHFVKP TALD E A+R T+V
Sbjct: 539 ICSIDPPGCVDIDDALHAKKLPNGN----WEVGVHIADVTHFVKPGTALDAEGAARGTSV 594
Query: 264 YLVDRRIDMVPG--NVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIK 321
YLVD+RIDM+P + ++K Y+ +R AFS +WE+D++AN+++ F KS+I+
Sbjct: 595 YLVDKRIDMLPMLLGTDLCSLKPYV-------DRFAFSVIWELDDSANIVNVNFMKSVIR 647
Query: 322 SKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXXXXXXXXDSGALLLASPEIR 376
S+ A +YE+AQ+ IDD ++ DE+ ++GAL LASPE++
Sbjct: 648 SREAFSYEQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVK 702
>UniRef50_Q4Q8N7 Cluster: Rrp44p homologue, putative; n=3;
Leishmania|Rep: Rrp44p homologue, putative - Leishmania
major
Length = 920
Score = 292 bits (716), Expect = 1e-77
Identities = 161/384 (41%), Positives = 219/384 (57%), Gaps = 31/384 (8%)
Query: 2 RILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKP 61
RIL+QG + +NRAI D+VA+++ P WR P PE+ EE+ +
Sbjct: 211 RILIQGRVNMNRAIHDDVVAVQLLPVSSWRGPKG-----SAPLPESASEEDAITAG---- 261
Query: 62 VDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRH-------LFTPAEKRIPRVRI 114
PTGKVVG++ R +CG L + + LF P RIPR+RI
Sbjct: 262 ------FVPTGKVVGLLSSNRRPFCGSLDEGELEQVKANMSDNVSILFQPKNNRIPRIRI 315
Query: 115 ETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFS 174
TR + L +R+ V +D WP S +P+GH V + D+D E VILLEHDVPH FS
Sbjct: 316 STRHVQDLMDKRLSVVIDDWPLYSSFPVGHYVEVLGKIGDRDTEAMVILLEHDVPHYDFS 375
Query: 175 EAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYE 234
EAV +CLP W++ ++E +R+DLRD+C+ SVDP GC DIDDALH R + + E
Sbjct: 376 EAVHDCLPKGQWSVTKDEEARRLDLRDLCIVSVDPLGCRDIDDALHCRVVNGNH----LE 431
Query: 235 VGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEE 294
VGVHIADVTHF+ TA+D EAA RST+VYLVDRRI+M+P ++ + + E+
Sbjct: 432 VGVHIADVTHFLHEGTAMDDEAAKRSTSVYLVDRRINMLPQLLTEN-----LCSLVEAED 486
Query: 295 RLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXX 354
R AFS +WE DEN NV+ F K+II+S+ A+ Y +AQ ID+ + +IA S
Sbjct: 487 RYAFSILWEFDENLNVVRDWFGKTIIRSRGALYYGDAQRMIDNPADTSDIAVSLRELMRL 546
Query: 355 XXXXXXXXXDSGALLLASPEIRFQ 378
+ GAL LAS E +F+
Sbjct: 547 SKHFKAQREEDGALFLASQEFKFK 570
>UniRef50_Q00YG1 Cluster: Exosomal 3'-5' exoribonuclease complex,
subunit Rrp44/Dis3; n=2; Ostreococcus|Rep: Exosomal
3'-5' exoribonuclease complex, subunit Rrp44/Dis3 -
Ostreococcus tauri
Length = 975
Score = 290 bits (712), Expect = 4e-77
Identities = 176/406 (43%), Positives = 232/406 (57%), Gaps = 39/406 (9%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKP-SNIVLED---------KTEDPENILEEE 52
+ L G +NRA DGD VAIEI P+ EW +P S IV D T+D L E
Sbjct: 283 VFLSGRAAMNRAFDGDSVAIEILPESEWLRPGSKIVTSDIEDDAAATTSTDDESGGLAPE 342
Query: 53 TVL---LDAAKPVDNDDEITPTGKVVGIIRRKWRQ--YCGIL------MPSKFHGA---T 98
T + A + PTGKVVGIIRR WR+ Y + K GA T
Sbjct: 343 TAEETDIVGAVATGAKSGVVPTGKVVGIIRRNWRERGYAASIDMGKDGKGPKATGAGFTT 402
Query: 99 RHLFTPAEKRIPRVRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAE 158
R L P+++R P++RI+TRQ E L QRI+V +D WP +S YP GH V+ DAE
Sbjct: 403 RVLCVPSDRRFPKIRIQTRQLEGLLDQRIVVVVDDWPADSAYPEGHYVKSLGVIGTVDAE 462
Query: 159 NEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQK--RVDLRDVCVCSVDPPGCTDID 216
+ +LLE+DV F+ AV C+P W + E + R DLRD+ VCSVDPPGC DID
Sbjct: 463 TQALLLENDVDDRPFAPAVFACVPALPWRVTEHHLAEPGREDLRDLLVCSVDPPGCKDID 522
Query: 217 DALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGN 276
DAL AR L E+GVHIADVT F+ P+TA+D+EAA R TT YLV RR+DM+PG
Sbjct: 523 DALSARELDDE----RIELGVHIADVTSFLHPNTAMDEEAARRGTTTYLVQRRLDMLPG- 577
Query: 277 VSVTTVKYYILQVSCGEERLAFSCVWEMDENA----NVLSTKFHKSIIKSKAAMTYEEAQ 332
++TT I + GEERLAFS W ++++ + +F KS+IKS AA+TYE+AQ
Sbjct: 578 -ALTT---DICSLVGGEERLAFSAFWIVNKSTMLPDETIKPRFTKSVIKSAAALTYEQAQ 633
Query: 333 IAIDDSSRKDEIAKSXXXXXXXXXXXXXXXXDSGALLLASPEIRFQ 378
+ IDD++ D++ S ++GAL LASPE++F+
Sbjct: 634 LRIDDATLNDDLTLSLRRLRDIARRLRKRRMENGALTLASPEVKFE 679
>UniRef50_Q9SNK4 Cluster: EST AU068209(C12438) corresponds to a
region of the predicted gene; n=2; Magnoliophyta|Rep:
EST AU068209(C12438) corresponds to a region of the
predicted gene - Oryza sativa subsp. japonica (Rice)
Length = 908
Score = 281 bits (690), Expect = 2e-74
Identities = 163/392 (41%), Positives = 226/392 (57%), Gaps = 40/392 (10%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDA---A 59
I++ G +NRA DGDIVA+E+ P+++W + + + +D +D E++ DA A
Sbjct: 262 IVIHGRSNMNRAFDGDIVAVELLPQDQWHESKSFIADDDEDDEEDVHLAPNSADDAPRKA 321
Query: 60 KPVDND-----DEIT--PTGKVVGIIRRKWRQYCGIL----MPSKFHGATRHLFTPAEKR 108
P + D ++ P G+VVGII+R W YCG L MP+ G LF ++R
Sbjct: 322 NPTQSTAASSADSVSSRPVGRVVGIIKRNWNSYCGSLEPMPMPAGSGGVAHALFVSKDRR 381
Query: 109 IPRVRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDV 168
IP++RI+TRQ L +RI+VA+DSW SRYP GH V+L+E+D+
Sbjct: 382 IPKIRIQTRQLGNLLDKRIIVAVDSWDVLSRYPSGHY---------------VVLIENDI 426
Query: 169 PHARFSEAVLNCLPPNDWTIPEEE--RQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGS 226
FS VL CLPP WT+ E+ R DLR V V SVDPPGC DIDDALH L +
Sbjct: 427 NTRPFSTQVLACLPPLPWTLSPEDLANPNRQDLRHVRVFSVDPPGCRDIDDALHCTPLPN 486
Query: 227 SDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYI 286
+ +EVGVHIADVT+FV P T LD+EA+ R T+VYLV +RIDM+P ++ +
Sbjct: 487 GN----FEVGVHIADVTNFVHPGTPLDEEASQRGTSVYLVGQRIDMLPKPLTED-----V 537
Query: 287 LQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAK 346
+ ERLAFS +WEM +A+++ST++ KS+IKS AAM+Y EAQ +DDS D +
Sbjct: 538 CSLRADVERLAFSVIWEMTPHADIISTRYTKSVIKSCAAMSYVEAQARMDDSRLVDPLTV 597
Query: 347 SXXXXXXXXXXXXXXXXDSGALLLASPEIRFQ 378
+ GAL LAS E++F+
Sbjct: 598 DLRNLNSLAKIMRHRRCERGALTLASAEVKFE 629
>UniRef50_A2FUQ4 Cluster: RNB-like protein; n=1; Trichomonas
vaginalis G3|Rep: RNB-like protein - Trichomonas
vaginalis G3
Length = 863
Score = 266 bits (651), Expect = 9e-70
Identities = 140/311 (45%), Positives = 192/311 (61%), Gaps = 12/311 (3%)
Query: 70 PTGKVVGIIRRKWRQYCGILMPSKFHGATRH--LFTPAEKRIPRVRIETRQSEILASQRI 127
PTGKVV I+ RK R CG ++P K L P ++ +P++RI +RQ + L R+
Sbjct: 274 PTGKVVSILSRKSRVICGTVLPPKVQTNDWQSLLVVPQQENLPKIRIRSRQVQELIGMRV 333
Query: 128 LVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWT 187
VA+DSW NS+YP GH + + AE+EVIL+ +++PH FS+AVLNCLPP D+
Sbjct: 334 HVAIDSWAINSKYPSGHYISTIGQAGNLQAESEVILMTNEIPHDAFSDAVLNCLPPKDFQ 393
Query: 188 IPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVK 247
EE ++R+DLRD CVCS+DPPGCTDIDDALH + + T E+GVHIADV+ FV+
Sbjct: 394 PTPEEVKRRMDLRDRCVCSIDPPGCTDIDDALHYKDIDEE----TCEIGVHIADVSFFVR 449
Query: 248 PDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMD-E 306
TA+D EA R TTVYLV++RI M+P +S + + G ERLAFS V M+ +
Sbjct: 450 EGTAIDLEARDRGTTVYLVEKRIHMLPSLLSED-----LCSIRGGIERLAFSVVAIMNKK 504
Query: 307 NANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXXXXXXXXDSG 366
A + KF KSIIKS+AA++Y AQ ++D + + E+AK D G
Sbjct: 505 TAETIDVKFGKSIIKSRAALSYGRAQEIVEDQNDQSELAKGIRGLLALSKIMNKKRMDDG 564
Query: 367 ALLLASPEIRF 377
AL L+SP++ F
Sbjct: 565 ALTLSSPQLHF 575
>UniRef50_A7AWK8 Cluster: RNB-like domain containing protein; n=1;
Babesia bovis|Rep: RNB-like domain containing protein -
Babesia bovis
Length = 951
Score = 248 bits (608), Expect = 1e-64
Identities = 155/386 (40%), Positives = 213/386 (55%), Gaps = 28/386 (7%)
Query: 7 GHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTED---PENILEEETV---LLDAAK 60
G +NRAI GD V IEI ++V+ D +D PE+I+ E++ LLD K
Sbjct: 303 GTYNLNRAIHGDAVCIEIVTDG-----MDVVVPDSGDDAAVPEDIVAEDSEDIKLLDVDK 357
Query: 61 PVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKF------HG-ATRHLFTPAEKRIPRVR 113
+ + +VVGI++R WR+YCG LM H + +F P + RIP +
Sbjct: 358 TDKPLECLKKECRVVGILKRNWREYCGTLMAVDEAIDMVGHSHMVQRIFVPVDARIPYIC 417
Query: 114 IETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARF 173
I+TR+S L ++RI+V +DSW R SR P GH V + D + E+ VIL EH+V F
Sbjct: 418 IDTRKSSELENKRIVVVIDSWDRFSRKPSGHWVEIIGDVEDLETESAVILREHEVITREF 477
Query: 174 SEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATY 233
LPP DW E+ + R D R V SVDPPGC DIDDAL L + +
Sbjct: 478 PPKAYMELPPADWKPGAEDIKLRKDFRKNLVFSVDPPGCKDIDDALGFSVLDNGN----I 533
Query: 234 EVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGE 293
EV VHIADVTHFVK + +DKEA+ R TTVYLVDRR DM+P S+ T + + E
Sbjct: 534 EVSVHIADVTHFVKAGSFIDKEASKRCTTVYLVDRRTDMLP---SLLTTN--LCSLVPNE 588
Query: 294 ERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXX 353
+RL FS VW+ D N ++ T+F+K II+S A TY++AQ I D+ D I ++
Sbjct: 589 DRLCFSVVWQFDRNNEIVDTQFYKGIIRSSRAFTYKDAQDLI-DAGGSDNITEALKGLDN 647
Query: 354 XXXXXXXXXXDSGALLLASPEIRFQF 379
+SGA+ L SPE++F++
Sbjct: 648 IAKILRAKRFESGAVELESPEVKFEY 673
>UniRef50_A3FQ82 Cluster: Mitotic control protein dis3, putative;
n=3; Cryptosporidium|Rep: Mitotic control protein dis3,
putative - Cryptosporidium parvum Iowa II
Length = 922
Score = 242 bits (592), Expect = 1e-62
Identities = 142/387 (36%), Positives = 213/387 (55%), Gaps = 28/387 (7%)
Query: 22 IEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKPVDND-----DEITPTGKVVG 76
IE F E +I+L D D + L + + + + + DN+ + +G+V+G
Sbjct: 350 IEDFEHSEIAGIGSILLGDDDYDENSALNIQNISIQSIENEDNNSLAFSENTNFSGRVIG 409
Query: 77 IIRRKWRQYCGILMP-----SKFH----GATRH--LFTPAEKRIPRVRIETRQSEILASQ 125
++ R W +YCG L+P +F+ +TR +F P + +IP++ I T+ S + +Q
Sbjct: 410 VLSRNWGEYCGSLVPINSNDDRFNICNNTSTRQHRIFVPIDPKIPKIIIHTKLSSTIENQ 469
Query: 126 RILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPN- 184
R++V +D W +S YP GH+V + D + E VIL D+ + FS +VL CLP N
Sbjct: 470 RLVVVIDEWDCSSFYPTGHIVGVLGKAGDLETETSVILRIRDINSSEFSPSVLKCLPNND 529
Query: 185 ---DWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLAT---YEVGVH 238
DW E + + RVDLR+ V SVDPPGC DIDDAL + +D + Y V VH
Sbjct: 530 RNDDWKPNEIDFRDRVDLRNKLVFSVDPPGCKDIDDALSIELINPNDDNSQEKWYLVSVH 589
Query: 239 IADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAF 298
IADVTHFVKP+T +D EA+ RS T YLV++RIDM+P ++ I + ++RL+F
Sbjct: 590 IADVTHFVKPNTPIDDEASRRSNTCYLVNKRIDMLPEELTTN-----ICSLVSNKDRLSF 644
Query: 299 SCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXXX 358
+C WE++ENA + + F+K+II SK + TY +AQ IDD EIA S
Sbjct: 645 TCNWEINENAEIRNVYFNKTIINSKYSFTYLQAQNIIDDKCNNSEIAISLRRLMKISQVL 704
Query: 359 XXXXXDSGALLLASPEIRFQFFKKLNI 385
GA+ L+S E++ F + N+
Sbjct: 705 RKNRISRGAIELSSSEVKVDFEESRNL 731
>UniRef50_A0CC06 Cluster: Chromosome undetermined scaffold_166,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_166,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 897
Score = 241 bits (590), Expect = 2e-62
Identities = 144/383 (37%), Positives = 212/383 (55%), Gaps = 33/383 (8%)
Query: 12 NRAIDGDIVAIEIFPKEEW---RKPSNIVLEDK----------TEDPENILEEETVLLDA 58
NR + GD VA+E+ +++W +K I ++ T D + + + L +
Sbjct: 252 NRVLHGDRVAVELLSEDQWEQQQKQKEIKFDEDDDDDGNNNTHTNDTSHEIMSTSHLQNL 311
Query: 59 AKPVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQ 118
+ V + + + P GKVV +++R R +CG H ++F PA+ R P ++ +
Sbjct: 312 FRKVQSQN-LVPYGKVVSVLQRTERHFCG-------H-VENNIFVPADGRYPNFILKHSK 362
Query: 119 SEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVL 178
+ L ++I V WP S PL L ++ D E VILLEH V FS VL
Sbjct: 363 YDTLQDKKIQVQFVDWPVWSDKPLCKLKKVLGKAGDMYIEGNVILLEHQVEIREFSHQVL 422
Query: 179 NCLP--PNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVG 236
CLP + + I E+E ++R+DLRD+ VCS+DP GC DIDD LH RRL ++ YEVG
Sbjct: 423 ACLPIEGDKYRISEQEIKRRMDLRDILVCSIDPVGCKDIDDTLHCRRLENN----LYEVG 478
Query: 237 VHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERL 296
VHIADV+HFVKPD+A+DKEAA R TTVYLVDRR DM+P ++ + + +RL
Sbjct: 479 VHIADVSHFVKPDSAIDKEAAHRCTTVYLVDRRTDMLPKLLTEN-----LCSLVSNVDRL 533
Query: 297 AFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXX 356
AFS +W MD+ AN+ KF KS+I+S A++ Y++AQ ID+ + ++ +
Sbjct: 534 AFSVIWIMDDQANIKDVKFGKSVIRSVASLHYQQAQEMIDNPNDNSQLTQGIRLLNMLAK 593
Query: 357 XXXXXXXDSGALLLASPEIRFQF 379
D GAL LAS +++F F
Sbjct: 594 KLKQLRTDQGALSLASNQVKFSF 616
>UniRef50_Q00VG4 Cluster: Exosomal 3'-5' exoribonuclease complex,
subunit Rrp44/Dis3; n=3; Ostreococcus|Rep: Exosomal
3'-5' exoribonuclease complex, subunit Rrp44/Dis3 -
Ostreococcus tauri
Length = 1157
Score = 229 bits (561), Expect = 7e-59
Identities = 134/340 (39%), Positives = 191/340 (56%), Gaps = 30/340 (8%)
Query: 11 INRAIDGDIVAIEIFPKEEW-RKPSNIVLEDKTEDPENILEEETVLLDAAKPVDNDDEIT 69
+NRA+ GD+VA+E+ P+ EW N VLED E + E + ++ P T
Sbjct: 1 MNRAMHGDVVAVEVAPESEWCASMINTVLED-----EGVRESDLSASVSSSPK------T 49
Query: 70 PTGKVVGIIRRKWRQYCGILMPSKFHGATRH--------LFTPAEKRIPRVRIETRQSEI 121
TGK+VGI+RR+ L TR+ L P + +I ++++ TR++
Sbjct: 50 RTGKIVGILRREVMDVVACLDSIDEEEITRNPHAKRNGALCVPMDGKIVKIKLLTRRANE 109
Query: 122 LASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCL 181
L +R +V +D W N RYP GHL+R+ D D E +L H++P F L L
Sbjct: 110 LVGKRFVVRVDRWRENQRYPNGHLIRVLGDVGDVDGEMAALLARHEIPAEPFGARALAEL 169
Query: 182 PPN--DWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLAT---YEVG 236
P +W +P EE + R DLR CS+DPPGCTD+DDAL R + S+ A +E+G
Sbjct: 170 PREGTNWVVPREELETRRDLRHHRACSIDPPGCTDVDDALSVRAVPQSERGANGGAFEIG 229
Query: 237 VHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERL 296
VHIADV++FV+P T LD EA +R TTVYLVDRR+DM+P +S +L+ +RL
Sbjct: 230 VHIADVSYFVQPGTTLDHEAQTRGTTVYLVDRRLDMLPSLLSENLAS--LLE---KRDRL 284
Query: 297 AFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAID 336
A SCVW +DEN +V+ F +++I S+ MTY +AQ D
Sbjct: 285 AMSCVWTLDENLDVVDVWFGRTVIHSRHQMTYYQAQAIYD 324
>UniRef50_Q4UH40 Cluster: Exosome complex exonuclease rrp44,
putative; n=2; Theileria|Rep: Exosome complex
exonuclease rrp44, putative - Theileria annulata
Length = 955
Score = 226 bits (553), Expect = 7e-58
Identities = 154/417 (36%), Positives = 220/417 (52%), Gaps = 53/417 (12%)
Query: 9 IGINRAIDGDIVAIEIFPKEEWRKPSNIV--LEDKTEDPENILEEETVLLDAAKPVDNDD 66
I +NRA+DGD V +++ P+N V D +N ++ + L+ +NDD
Sbjct: 285 IHLNRALDGDQVIVQLIDT-----PNNTVDNTTDNVHYSDNGIDNNSAGLEEQVGTENDD 339
Query: 67 EITPTG--------------KVVGIIRRKWRQYCGILMPSKFH---GATRHLFTPAEKRI 109
G K+V I+ R +++CG L+P + G + LF P + RI
Sbjct: 340 SNLIYGYLEPEQYKVIKRYCKIVSIVNRMRKEFCGSLLPIEGEVGDGYVQRLFVPVDARI 399
Query: 110 PRVRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVP 169
P + IETR+S+ L + RI+V +DSW R S+ P GH + P D++ E+ VIL EH V
Sbjct: 400 PFISIETRRSKELENNRIVVEVDSWDRFSKRPNGHWTEILGPIDDRNVESTVILREHQVI 459
Query: 170 HARFS-------EAVLNCLPPNDWTIPEEERQK----------RVDLRDVCVCSVDPPGC 212
FS + + L T +E++ RVD RD V SVDPPGC
Sbjct: 460 TEDFSLQSYRHLGLITSSLVDTSSTEKDEDKSDIKITPELLGGRVDYRDEVVFSVDPPGC 519
Query: 213 TDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDM 272
DIDDAL +RL + + +EV VHIADVT+FV + LDKEA+ R TTVYLVDRR DM
Sbjct: 520 KDIDDALGCKRLSNGN----FEVSVHIADVTYFVPEGSNLDKEASERCTTVYLVDRRTDM 575
Query: 273 VPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQ 332
+P ++ + + RL FS WEMD N +L+TKF KS+IKS+ ++TY++AQ
Sbjct: 576 LPKLLTTN-----LCSLMSDVNRLTFSVYWEMDMNGVILATKFSKSVIKSRRSLTYQQAQ 630
Query: 333 IAIDDSSRKDEIAKSXXXXXXXXXXXXXXXXDSGALLLASPEIRFQF--FKKLNIQS 387
ID SS DE++ S + GA+ L S E++F+F K LN++S
Sbjct: 631 EMIDSSS-NDEVSVSLRNLNNLSKILRKQRIERGAVELESSEVKFEFDMSKVLNLES 686
>UniRef50_A7S7H2 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1048
Score = 213 bits (519), Expect = 9e-54
Identities = 130/354 (36%), Positives = 189/354 (53%), Gaps = 34/354 (9%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKPV 62
+L+ G NRA+ GD+V +E+ PK +W+ S + L EE A+
Sbjct: 278 VLIYGVANRNRAVHGDVVVVEVLPKSQWKGRSTALK----------LHEED-----AEDS 322
Query: 63 DNDDEITPTGKVVGIIRRKWRQYC-----GILMPSKFHGATRHLFTPAEKRIPRVRIETR 117
N ++ TG VVG+++R WR Y ++ + A + + P + RIP++RI TR
Sbjct: 323 GNSSDVMMTGHVVGVLQRNWRDYVVSFAEDVVSQDQRRSAGKVVVVPWDYRIPKIRISTR 382
Query: 118 QSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAV 177
Q E L QR ++ +DSW +S YP GH VR D + E +++EH + F++
Sbjct: 383 QVEALRDQRYVIRIDSWEVDSMYPSGHFVRALGLIGDLETEVATLMVEHTLSAPPFTDGQ 442
Query: 178 LNCLPPND----WTIPEEERQKRVDLR-DVCVCSVDPPGCTDIDDALHARRLGSSDGLAT 232
L LP + W I EEE +R DLR V S+DP GC D+DD L R+L DG
Sbjct: 443 LKELPSDSPTEPWVISEEEVCRRRDLRKSHLVFSIDPKGCEDVDDTLSIRQL--KDG--R 498
Query: 233 YEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCG 292
E+GVHIADVTHFV P + D EA SRST+VYL DRR DM+P +S + + G
Sbjct: 499 LELGVHIADVTHFVHPGSLTDAEARSRSTSVYLADRRYDMLPEILSAN-----LCSLISG 553
Query: 293 EERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAK 346
+RLA S +W + N +V+ T + ++II+S + YE AQ D +++ K
Sbjct: 554 VDRLAMSVMWVLGSNYDVIKTWYGRTIIRSSYKLFYEVAQAIADGVVPNEDLLK 607
>UniRef50_Q8IDB6 Cluster: Mitotic control protein dis3 homologue,
putative; n=1; Plasmodium falciparum 3D7|Rep: Mitotic
control protein dis3 homologue, putative - Plasmodium
falciparum (isolate 3D7)
Length = 1062
Score = 212 bits (518), Expect = 1e-53
Identities = 118/316 (37%), Positives = 185/316 (58%), Gaps = 13/316 (4%)
Query: 72 GKVVGIIRRKWRQYCGILMP--SKFHGATRHL--FTPAEKRIPRVRIETRQSEILASQRI 127
GKVVGII R ++Y GI+ + + + L F +IP + I+ + + L ++R+
Sbjct: 467 GKVVGIISRCRKEYGGIIKEYSNNLNNIKKKLMFFKAFNNKIPYIMIKAQLEDELRNKRV 526
Query: 128 LVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWT 187
+V +D+W SR PLG + + D + E ++I E+++ FSE V CLPPN+W
Sbjct: 527 IVTIDNWDIYSRNPLGRCISVLGNCDDIETETKLIYNEYNISTREFSENVYKCLPPNNWV 586
Query: 188 IPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRL---GSSDGLATYEVGVHIADVTH 244
IP+EE +KR D R+V S+DPPGC DIDDAL L G+ + Y +GVHIADV++
Sbjct: 587 IPDEEYEKRNDFRNVLTFSIDPPGCQDIDDALSVEFLQQDGNIEKNYIYRIGVHIADVSY 646
Query: 245 FVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEM 304
FVK ++ +D EA+ R TTVYL+++R+DM+P +TT +++ GEERL +SC++
Sbjct: 647 FVKQNSPIDLEASKRCTTVYLINQRVDMLP--KLLTTNLCSLVE---GEERLTYSCIFCF 701
Query: 305 DENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXXXXXXXXD 364
+++ +++ K IIKS + +YE+AQ IDD + + + AKS +
Sbjct: 702 NKDFDIIDISVKKCIIKSNKSFSYEQAQNVIDDKNDQSDTAKSLRLLNKIAKHLKQKWSN 761
Query: 365 SGAL-LLASPEIRFQF 379
GAL L + E+ F+F
Sbjct: 762 DGALELRGNTEVLFEF 777
>UniRef50_Q8WTU9 Cluster: DIS3 mitotic control homolog (S.
cerevisiae)-like; n=15; Eutheria|Rep: DIS3 mitotic
control homolog (S. cerevisiae)-like - Homo sapiens
(Human)
Length = 971
Score = 212 bits (517), Expect = 2e-53
Identities = 130/346 (37%), Positives = 191/346 (55%), Gaps = 36/346 (10%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKPV 62
IL+ G NR+I GD+V +E+ PK EW+ + + E+ +D +
Sbjct: 194 ILIHGMKARNRSIHGDVVVVELLPKNEWKGRTVALCENDCDDKAS--------------G 239
Query: 63 DNDDEITPTGKVVGIIRRKWRQYCGILMPSKFH------GATRHLFTPAEKRIPRVRIET 116
++ E PTG+VVGI+++ WR Y + PSK A + L TP + RIP++RI T
Sbjct: 240 ESPSEPMPTGRVVGILQKNWRDYV-VTFPSKEEVQSQGKNAQKILVTPWDYRIPKIRIST 298
Query: 117 RQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEA 176
+Q+E L R++V +DSW S YP GH VR+ D + E IL+E+ + FSEA
Sbjct: 299 QQAETLQDFRVVVRIDSWESTSVYPNGHFVRVLGRIGDLEGEIATILVENSISVIPFSEA 358
Query: 177 VLNCLPPN----DWTIPEEERQKRVDLR-DVCVCSVDPPGCTDIDDALHARRLGSSDGLA 231
+ +P N W + EE QKR DLR V S+DP GC D+DD L R L + +
Sbjct: 359 QMCEMPVNTPESPWKVSPEEEQKRKDLRKSHLVFSIDPKGCEDVDDTLSVRTLNNGN--- 415
Query: 232 TYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSC 291
E+GVHIADVTHFV P++ +D EA +R+TT YL DRR DM+P +S + +
Sbjct: 416 -LELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRRYDMLPSVLSAD-----LCSLLG 469
Query: 292 GEERLAFSCVWEMDE-NANVLSTKFHKSIIKSKAAMTYEEAQIAID 336
G +R A S +WE+D+ + + + ++II+S + YE AQ +D
Sbjct: 470 GVDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEAAQELLD 515
>UniRef50_Q69Z56 Cluster: MKIAA1955 protein; n=17; Euteleostomi|Rep:
MKIAA1955 protein - Mus musculus (Mouse)
Length = 1073
Score = 211 bits (516), Expect = 2e-53
Identities = 129/347 (37%), Positives = 192/347 (55%), Gaps = 38/347 (10%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKPV 62
IL+ G NR+I GD+V +E+ PK EW+ + + E+ ++D +
Sbjct: 297 ILIHGSKARNRSIHGDVVVVEMLPKSEWKGRTAALGENDSDDKAS--------------G 342
Query: 63 DNDDEITPTGKVVGIIRRKWRQYCGILMPSKFH------GATRHLFTPAEKRIPRVRIET 116
++ E PTG+VVGI+++ WR Y + PSK A + L TP + RIP++RI T
Sbjct: 343 ESPSEPMPTGRVVGILQKNWRDYV-VTFPSKEEVQSQGKNAQKILVTPWDYRIPKIRIST 401
Query: 117 RQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEA 176
+Q+E L R++V +DSW S YP GH VR+ D + E IL+E+ + FSEA
Sbjct: 402 QQAEALQDFRVVVRIDSWEATSVYPNGHFVRVLGRIGDLEGEIATILVENSISVVPFSEA 461
Query: 177 VLNC-----LPPNDWTIPEEERQKRVDLRDV-CVCSVDPPGCTDIDDALHARRLGSSDGL 230
+ C P N W + +E Q+R DLR V S+DP GC D+DD L R L + +
Sbjct: 462 QM-CEMPVNTPENPWKVSPKEEQERKDLRTTHLVFSIDPKGCEDVDDTLSVRTLNNGN-- 518
Query: 231 ATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVS 290
E+GVHIADVTHFV P++ +D EA +R+TT YL DRR DM+P +S + +
Sbjct: 519 --LELGVHIADVTHFVAPNSYIDVEARTRATTYYLADRRYDMLPSILSAD-----LCSLL 571
Query: 291 CGEERLAFSCVWEMDENA-NVLSTKFHKSIIKSKAAMTYEEAQIAID 336
G +R A S +WE+D+ + + + ++II+S + YE AQ +D
Sbjct: 572 GGVDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQELLD 618
>UniRef50_Q4YNU8 Cluster: Mitotic control protein dis3 homologue,
putative; n=9; Plasmodium|Rep: Mitotic control protein
dis3 homologue, putative - Plasmodium berghei
Length = 1015
Score = 208 bits (508), Expect = 2e-52
Identities = 139/418 (33%), Positives = 218/418 (52%), Gaps = 49/418 (11%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPS--------NIVLEDKTEDPENILEEETV 54
++++G+ +NRAI DIVA+EIF ++ PS +V D+ E+ E EEE
Sbjct: 316 VIIKGY-KMNRAIHNDIVAVEIF--SQFTDPSYGESDYFEELVDPDEKEEEEEEEEEEER 372
Query: 55 LLDAAKPVDNDDEITPT-------------------------GKVVGIIRRKWRQYCGIL 89
D + N+ TP GKV+GII R ++Y G++
Sbjct: 373 ADDGEEKKTNNMNKTPCIAKSENEQNIKTGEGNEFIECKKLYGKVIGIISRSRKEYGGVI 432
Query: 90 MPSKFHGATRHL-----FTPAEKRIPRVRIETRQSEILASQRILVALDSWPRNSRYPLGH 144
+++ F +IP + I++ E L+++R++V +D W NS+YPLG
Sbjct: 433 KSCDNDKNNKYIEKLLFFKAFNSKIPHIIIKSNMEEELSNKRVIVTIDKWDFNSKYPLGR 492
Query: 145 LVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCV 204
+ + D +AE ++I E+++ FSE+ LPP++W IPEEE KR+D R++
Sbjct: 493 CLSVLGVCDDIEAETKLIYNEYNISTKEFSESAYLSLPPSNWVIPEEEFSKRIDFRNILT 552
Query: 205 CSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVY 264
S+DPPGC DIDDAL L + +VGVHIADV++FVK ++ALD EA+ R TTVY
Sbjct: 553 FSIDPPGCQDIDDALSVEIL---EDEKIIKVGVHIADVSYFVKQNSALDLEASKRCTTVY 609
Query: 265 LVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKA 324
L ++R+DM+P +TT +++ ++RL +SC++ + N ++L K II S
Sbjct: 610 LTNQRVDMLP--KLLTTDLCSLVE---KQDRLTYSCIFTFNTNYDILDINIAKCIINSDR 664
Query: 325 AMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXXXXXXXXDSGALLLASPEIRFQFFKK 382
+ TYE+AQ IDDS+ IA S + L + E+ F+F +K
Sbjct: 665 SFTYEQAQNIIDDSNDTSSIAISLRLLNSIAKDLKKKWLNDALELKGNSEVVFEFEQK 722
>UniRef50_Q55FB1 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1504
Score = 206 bits (503), Expect = 8e-52
Identities = 117/344 (34%), Positives = 184/344 (53%), Gaps = 18/344 (5%)
Query: 2 RILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKP 61
++++ G NRA+ GD VA+ + P+++W + + D +D +N + D
Sbjct: 510 KVMIIGKFNQNRAVHGDKVAVSLLPEDQWLPYDSSLNLDDDDDDDNDNSNDDNSNDEEYF 569
Query: 62 VDNDDEIT-PTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSE 120
+N+D++ PTGKV+GI +R WR Y G + + + P + RIP +R+ T+
Sbjct: 570 KNNNDKLKIPTGKVIGIFQRNWRDYIGTVEKNTSLFTNFLMIVPFDYRIPLIRVPTKNPS 629
Query: 121 ILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNC 180
+R+++ +DSW NS YP+GH V + + E +++EHD+ ++ +++L C
Sbjct: 630 QYLGKRLVIRMDSWDLNSNYPMGHYVSSIGESGSLETELSALMVEHDISLKQWPQSILKC 689
Query: 181 LPPND----WTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVG 236
LP + W IP EE+ R L + + S+DP G DIDDA+ +G E+G
Sbjct: 690 LPESSDQSPWQIPPEEKAYRRQLTNHHIMSIDPLGSKDIDDAI---SIGYPTN-DIIEIG 745
Query: 237 VHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERL 296
VHIADV+HFVK + LD EA R TT+YL DRR DM+P +S + + G R
Sbjct: 746 VHIADVSHFVKEGSPLDLEAKRRGTTIYLPDRRFDMLPAVLSED-----VCSLRGGLPRC 800
Query: 297 AFSCVWEMDENAN----VLSTKFHKSIIKSKAAMTYEEAQIAID 336
A S VW+ N N ++ T F ++II S A + Y+ AQ ID
Sbjct: 801 AMSVVWQFKRNPNKTYEIVDTWFGRTIIHSSAELHYQLAQDIID 844
>UniRef50_Q4RNE5 Cluster: Chromosome undetermined SCAF15013, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF15013,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 855
Score = 204 bits (498), Expect = 3e-51
Identities = 99/206 (48%), Positives = 138/206 (66%), Gaps = 6/206 (2%)
Query: 2 RILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKP 61
++L+QG +NRA+ D+VA+++FP+ +W PS+++L+D+ E + +EE +
Sbjct: 241 QVLIQGLQNLNRAVHQDVVALQLFPQSQWVAPSSVLLQDEGEAKDADADEEE------EK 294
Query: 62 VDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEI 121
V N PTGKVVGII+R WR +CG+L S+ +TRHLFTPA++ IPR+RIETRQ+
Sbjct: 295 VVNLSARKPTGKVVGIIKRNWRPFCGMLNVSQIKESTRHLFTPADRCIPRIRIETRQASA 354
Query: 122 LASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCL 181
LA QRI+VA+D WP++SRYP GH VR DKD E EV+LLEHDVPH FS+AVL+ L
Sbjct: 355 LAGQRIMVAIDGWPKHSRYPNGHFVRSLGKAGDKDTEQEVLLLEHDVPHQPFSQAVLSFL 414
Query: 182 PPNDWTIPEEERQKRVDLRDVCVCSV 207
P W+I E +L +CS+
Sbjct: 415 PKMPWSITAERIDMVPELLSSNLCSL 440
Score = 62.1 bits (144), Expect = 2e-08
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 29/133 (21%)
Query: 269 RIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSK----- 323
RIDMVP +S + + +R AFSC+WE+ +A +L T+F KS+I SK
Sbjct: 425 RIDMVPELLSSN-----LCSLRSNVDRFAFSCIWELSHDAEILKTRFTKSVINSKVTHTH 479
Query: 324 -------------------AAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXXXXXXXXD 364
A++TY EAQ+ IDD ++ D+I +S +
Sbjct: 480 THTHSRVGRSLKTAVEPPQASLTYAEAQMRIDDGTKNDDITQSLRGLNKLAKILKKQRIE 539
Query: 365 SGALLLASPEIRF 377
+GAL L+S E+RF
Sbjct: 540 NGALTLSSLEVRF 552
>UniRef50_UPI0000E4632C Cluster: PREDICTED: similar to mKIAA1955
protein; n=3; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to mKIAA1955 protein -
Strongylocentrotus purpuratus
Length = 887
Score = 201 bits (490), Expect = 3e-50
Identities = 129/349 (36%), Positives = 183/349 (52%), Gaps = 42/349 (12%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKPV 62
IL+ G NRA+ GDIV +E+ PK +W ++ + E++
Sbjct: 273 ILISGTKNRNRAVHGDIVVVELLPKAQWTGKKLVLKSGDDREAEDV-------------- 318
Query: 63 DNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGAT-------RHLFTPAEKRIPRVRIE 115
+ P G+VVGI+ R WR Y P K T + L P + RIP++R+
Sbjct: 319 ---SDAVPCGRVVGILERNWRDYVATF-PEKDERETGGKNTKSKILVIPWDYRIPKIRVS 374
Query: 116 TRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSE 175
TRQ++ L QRI+V LD+WP +S+YP GH VR P + E L+E+ +P FSE
Sbjct: 375 TRQADALNDQRIVVRLDNWPADSQYPNGHYVRSLGPIGQLETEVAATLIENSLPVGPFSE 434
Query: 176 AVLNCLPPNDWTIP----EEERQKRVDLRDV-CVCSVDPPGCTDIDDALHARRLGSSDGL 230
+ +P N W P +EE KR DLR+ + S+DP GC D+DD L R LG+ +
Sbjct: 435 GQIKEMPVNTWDNPWLMTDEEIGKRKDLRNSHLIFSIDPKGCEDVDDTLSVRELGNGN-- 492
Query: 231 ATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVS 290
E+GVHIADV++FVK + D EA RSTTVYL DRR DM+P +S + +
Sbjct: 493 --IELGVHIADVSYFVKEGSLTDLEARLRSTTVYLADRRYDMLPEILSAD-----LCSLI 545
Query: 291 CGEERLAFSCVWEMDE-NANVLSTK--FHKSIIKSKAAMTYEEAQIAID 336
G +R A S +WE+ V+ K + ++II+S M YE AQ+ D
Sbjct: 546 GGVDRYAVSVLWELKPFTFEVIKDKVWYGRTIIRSAYKMFYEAAQMLHD 594
>UniRef50_Q8SW47 Cluster: Similarity to DIS3 PROTEIN; n=1;
Encephalitozoon cuniculi|Rep: Similarity to DIS3 PROTEIN
- Encephalitozoon cuniculi
Length = 835
Score = 195 bits (475), Expect = 2e-48
Identities = 129/388 (33%), Positives = 200/388 (51%), Gaps = 36/388 (9%)
Query: 1 MRILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAAK 60
+++L+ G +NRA+ GD V +E+ D+ ++ +L+ E + K
Sbjct: 203 VKVLVVGKKNMNRALSGDEVYVEVV--------------DEYDEDGILLDNEEGTQETRK 248
Query: 61 PVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHG--ATRHLFTPAEKRIPRVRIETRQ 118
+ GKVVGI RRK R G + P HG A L P ++RIP +RI T Q
Sbjct: 249 GAAGEGVF---GKVVGIHRRKCRAVIGSISPRTVHGDGAQNVLVIPIDRRIPAIRIRTSQ 305
Query: 119 SEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVL 178
+E L ++R+ V +D W R S YP GH R D++AE E +L+ + + + + A +
Sbjct: 306 AEELMNKRLCVEIDGWERTSNYPSGHYYRRLGTLGDRNAEMEAVLVANGITYYNKNWAEI 365
Query: 179 NCLPPNDWTI-------PEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLA 231
+P + I E R D R++ + S+DPP C DIDDALH R L + +
Sbjct: 366 LRVPWMNEDIFGMEKAYNEVREGTREDFRELSIVSIDPPDCEDIDDALHCRLLPNGN--- 422
Query: 232 TYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSC 291
+EVGVHIADVT++V + +DK AA R TT+YL + RIDM+P +S + +
Sbjct: 423 -WEVGVHIADVTYYVTKGSEIDKIAADRGTTIYLPEWRIDMLPPALSTD-----LCSLVA 476
Query: 292 GEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDD-SSRKDEIAKSXXX 350
G++R AFS VWEM + V+ T F +S+I+SK + +Y EA A+ DE+++S
Sbjct: 477 GKDRAAFSVVWEMSSDVRVVRTHFCRSLIRSKRSFSYNEAYDAVQGLVDAGDEVSRSLRM 536
Query: 351 XXXXXXXXXXXXXDSGALLLASPEIRFQ 378
G+L L++ ++ F+
Sbjct: 537 LLEISRVLRSRRFAKGSLDLSTRQLVFR 564
>UniRef50_Q4T2G1 Cluster: Chromosome undetermined SCAF10273, whole
genome shotgun sequence; n=2; Tetraodontidae|Rep:
Chromosome undetermined SCAF10273, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 1074
Score = 194 bits (472), Expect = 4e-48
Identities = 125/347 (36%), Positives = 188/347 (54%), Gaps = 43/347 (12%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKPV 62
+L+ G NRA GD+VA+E+ P+ EWR + E E+ E+
Sbjct: 264 VLVCGIKNRNRATHGDVVAVELLPRGEWRGRVAALAEGPGEESES--------------- 308
Query: 63 DNDDEITPTGKVVGIIRRKWRQYCGILMP-----SKFHGATRHLFTPAEKRIPRVRIETR 117
PTG+VVGI++R WR Y P S+ G L P ++RIP++R+ T+
Sbjct: 309 ----RAMPTGRVVGILQRNWRDYVVTFPPREGPQSQGRGPKHVLTVPWDRRIPKIRVGTQ 364
Query: 118 QSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAV 177
Q++ L R++V +DSW S+YP GH+VR+ + + E + +L+E+ + + FS+A
Sbjct: 365 QADALQGHRVVVRIDSWESTSQYPNGHMVRVLGRAGELETEIQTVLVENGIHLSPFSDAQ 424
Query: 178 LNCLPPND----WTIPEEERQKRVDLRDV-CVCSVDPPGCTDIDDALHARRLGSSDGLAT 232
L +P + W + ++ R DLR+ V S+DP GC D+DDAL RRL DG
Sbjct: 425 LREMPVSSPERPWRVDPDQAAARRDLRESHLVFSIDPRGCEDVDDALSVRRL---DG-GL 480
Query: 233 YEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCG 292
E+GVHIADVTHFVK + D EA R+TT YL DRR DM+P +S + + G
Sbjct: 481 LELGVHIADVTHFVKEGSLTDVEARLRATTYYLADRRYDMLPPVLSSD-----LCSLLGG 535
Query: 293 EERLAFSCVWEMDENANVLSTK---FHKSIIKSKAAMTYEEAQIAID 336
R A S +W++D A+ L+ K F +++I+S + YE AQ ++
Sbjct: 536 VGRYAMSVMWQLD--AHTLAVKDVWFGRTVIRSSYQLHYELAQALLN 580
>UniRef50_O14040 Cluster: Ribonuclease II (RNB) family; n=2;
Schizosaccharomyces pombe|Rep: Ribonuclease II (RNB)
family - Schizosaccharomyces pombe (Fission yeast)
Length = 927
Score = 186 bits (452), Expect = 1e-45
Identities = 112/287 (39%), Positives = 159/287 (55%), Gaps = 24/287 (8%)
Query: 73 KVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEILASQRIL---- 128
K+VGI+R + SK ++ +F P +KR+P + I L+ + +
Sbjct: 308 KIVGILRAPGWSLKNVEYVSK--KSSYAIFIPKDKRLPFITIHKNDLSDLSGENWIENIL 365
Query: 129 --------VALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNC 180
V + W SRYP+G L D +A +LLE+ + + FS+ VLNC
Sbjct: 366 KHHDQLFSVEITRWSIYSRYPMGVLGEKLGNITDVEAYTNALLLENGISSSPFSDEVLNC 425
Query: 181 LPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIA 240
LPP+DW I EE +KR DLR+ + ++DP D+DDA+ R L + TYEVGVHIA
Sbjct: 426 LPPDDWIISHEEIKKRRDLRNELIITIDPETARDLDDAVSCRALDN----GTYEVGVHIA 481
Query: 241 DVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSC 300
DVTHFVKPD+ALDKEAASR+TTVYLV + I M+P + + ++ ERLAFS
Sbjct: 482 DVTHFVKPDSALDKEAASRATTVYLVQKAIPMLP-----PLLCERLCSLNPNVERLAFSV 536
Query: 301 VWEMDENANVLSTK-FHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAK 346
W++D N + + F K++IK+ A + Y EAQ I+ S D + K
Sbjct: 537 FWKLDSNGKEIGKRWFGKTVIKTCARLAYSEAQGVIEGKSWDDAVGK 583
>UniRef50_UPI0000E47D53 Cluster: PREDICTED: hypothetical protein,
partial; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: hypothetical protein, partial -
Strongylocentrotus purpuratus
Length = 807
Score = 165 bits (401), Expect = 2e-39
Identities = 114/342 (33%), Positives = 169/342 (49%), Gaps = 24/342 (7%)
Query: 17 GDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKPVD----NDDEITP-T 71
GD+V E S+ V+ED P N T + + ND + P T
Sbjct: 131 GDLVRREWSDARSEVSSSSEVIEDAPRTPSNNRGSSTSGGGTPQKIGGTLGNDPRMAPKT 190
Query: 72 GKVVGIIRRKW-RQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEILASQR---- 126
+VV I K R G L A +F P + R+PR+ I ++ SQR
Sbjct: 191 ARVVYICEYKHSRAASGHLKLPSNPRAPDVMFAPTDHRVPRIYIPRKECPATFSQRPQDY 250
Query: 127 ----ILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLP 182
+ + WPR S + GHL+ + +AE +L+EH + + F+ VL LP
Sbjct: 251 ANTLFIAQIIDWPRISAFAKGHLLYSIGQAGEVEAETTAMLIEHGIDSSEFTTEVLEDLP 310
Query: 183 PN-DWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIAD 241
W IP EE +R DLR C+ ++DP D+DDALH + LG DG+ YE+GVHIAD
Sbjct: 311 KERPWRIPAEELSQRRDLRSECIFTIDPTTARDLDDALHCKALG--DGI--YEMGVHIAD 366
Query: 242 VTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCV 301
V++FVK DT+LDK A+ R+T+VYLV + I M+P + + ++ +ERL S +
Sbjct: 367 VSYFVKEDTSLDKTASHRATSVYLVQKVIPMLP-----RLLCEELCSLNPDQERLTMSFI 421
Query: 302 WEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDE 343
W M E +L +S+I+S ++Y AQ I++ K +
Sbjct: 422 WRMTEEGEILQEWCGRSVIRSCVKLSYLHAQDMIENWEEKGD 463
>UniRef50_Q5KDY7 Cluster: SSD1 protein, putative; n=2; Filobasidiella
neoformans|Rep: SSD1 protein, putative - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 1671
Score = 162 bits (393), Expect = 2e-38
Identities = 93/238 (39%), Positives = 133/238 (55%), Gaps = 17/238 (7%)
Query: 102 FTPAEKRIPRVRIETRQSEI-------LASQRILVA-LDSWPRNSRYPLGHLVRLFVPTC 153
F P +KR+P + I T Q+ S ++ VA + WP S +P G LV
Sbjct: 1013 FKPTDKRVPLIAIPTEQAPADFIDNPDAYSNKLFVATIKRWPITSLHPFGTLVEELGAIG 1072
Query: 154 DKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCT 213
+ + E +L + + P FSE + CLPP W++PE E R DLR+ V ++DPP
Sbjct: 1073 NSEVETSALLKDCNFPTEEFSEMTMKCLPPMPWSVPEREYDVRTDLREERVFTIDPPHSK 1132
Query: 214 DIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMV 273
D+DDAL + + DG T+ VGVHIADV+ FVK + LD+EA R+T+VYLV R + M
Sbjct: 1133 DLDDALSFK--DNKDG--TFTVGVHIADVSFFVKANAQLDREARKRATSVYLVQRAVPMF 1188
Query: 274 PGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEA 331
P +S + + ERL FS ++ +DE NVL KF K+I+KS A +TY++A
Sbjct: 1189 PPLLSED-----LCSLVPDYERLTFSAIFTVDEEGNVLQKKFAKTIVKSCAKLTYDDA 1241
>UniRef50_Q54XT5 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1343
Score = 161 bits (390), Expect = 4e-38
Identities = 114/336 (33%), Positives = 167/336 (49%), Gaps = 26/336 (7%)
Query: 16 DGDIVAIEIFPKEEWRKPSNIVLEDKTE-DPENILEE-ETVLLDAAKPVDNDDEITPTGK 73
D V IE PK KPS + D N++++ E + K +N ++ +
Sbjct: 639 DEGFVKIENSPKVSSVKPSKKNNNNNNNNDHSNLIQKLEKIEKLTLKAFENKQYVSV--R 696
Query: 74 VVGIIRRKW-RQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQ-------SEILASQ 125
VV I+ K + + GI++ + + F P + +P+ I E
Sbjct: 697 VVYIVEEKHNKNHVGIMVDENVNSIFTN-FIPMDTTLPKCCIFKESIPQYKSNPEKYKKS 755
Query: 126 RILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPND 185
+ V W S P+GH LF + E +L E V FS+ V+ CLP D
Sbjct: 756 LVSVGYSGWKETSLLPIGHYKSLFGECGKIEPETYALLSEFGVETDPFSKEVMECLPKID 815
Query: 186 ----WTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIAD 241
W E++ + R DLR++ +C++DP D+DDALH L DG +EVGVHIAD
Sbjct: 816 QSKLWLPSEQDLKGRRDLRNLEICTIDPDTAKDLDDALHCIEL--EDG--NFEVGVHIAD 871
Query: 242 VTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCV 301
V+HFVKPDTALDK A ++TTVYLV + I M+P +S + ++ G ERLAFS +
Sbjct: 872 VSHFVKPDTALDKCAQRKATTVYLVQKAIPMLPSLLSEE-----LCSLNMGVERLAFSVI 926
Query: 302 WEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDD 337
W++ +L F +S+IKS + +TY AQ IDD
Sbjct: 927 WKLSPTGEILDEWFGRSVIKSFSRLTYAIAQALIDD 962
Score = 34.3 bits (75), Expect = 5.6
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 12 NRAIDGDIVAIEIFPKEEWRK-PSNIVLEDKTEDP---ENILEEETVLLDAAKPV---DN 64
NR+ + D+VA EI ++EW+K P ED+T + N +T + + V D
Sbjct: 491 NRSFNNDVVAFEILDEKEWKKRPKKDEDEDETTEATNNNNNNNNDTTSIGGEEIVNEEDE 550
Query: 65 DDEIT 69
DDE+T
Sbjct: 551 DDEVT 555
>UniRef50_A7S1B6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 766
Score = 161 bits (390), Expect = 4e-38
Identities = 118/365 (32%), Positives = 178/365 (48%), Gaps = 35/365 (9%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLL----DA 58
+ L+G + NRA+DGDIVA+ I P+ +W+ + N + ++
Sbjct: 69 VYLEGVLARNRALDGDIVALNISPRNKWKLMKHEYDAHGASHEGNKTPSKGGTTPHTPES 128
Query: 59 AKPVDNDDEITP------TGKVVGIIRRKW-RQYCGILMPSKFH--GATRHLFTPAEKRI 109
+K +E P T VV II +K R G L P +++ LF+P++ R+
Sbjct: 129 SKNKQRKNEEIPDAYLQQTAHVVYIIEKKHTRAASGNLKPFQYNQGDVPDGLFSPSDSRL 188
Query: 110 PRVRIETRQSEI--------LASQRILVALDSWPRNSR----YPLGHLVRLFVPTCDKDA 157
PR+RI + + AS + + WP N+ + G + R + +
Sbjct: 189 PRMRIPHAKCPLGFFDRPQDFASTLFVGRITEWPENAPMDNFFATGEISRSLGEAGEIEP 248
Query: 158 ENEVILLEHDVPHARFSEAVLNCLPPND-WTIPEEERQKRVDLRDVCVCSVDPPGCTDID 216
E + I E+ + F + L+CLP W+IPE E R D RD CV ++DP D+D
Sbjct: 249 ETQGIFFEYGIDPGPFPDEALDCLPKETPWSIPETEFAHRRDFRDECVFTIDPLTARDLD 308
Query: 217 DALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGN 276
DALH +RL SDGL EVGVHIADV+ FVK T LD A R+T+ Y+V + M+P
Sbjct: 309 DALHCKRL--SDGL--IEVGVHIADVSFFVKTGTPLDDIAQERATSTYMVQTVVPMLPRR 364
Query: 277 VSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAID 336
+ + ++ E+RL FS VW M + + S + II+S+ M YE AQ ID
Sbjct: 365 LCEE-----LCSLNPDEDRLTFSVVWIMTDQGEIKSDWKGRGIIRSRVKMAYEHAQEMID 419
Query: 337 DSSRK 341
++K
Sbjct: 420 KPNKK 424
>UniRef50_UPI000065FEE8 Cluster: DIS3 mitotic control homolog (S.
cerevisiae)-like 2; n=5; Euteleostomi|Rep: DIS3 mitotic
control homolog (S. cerevisiae)-like 2 - Takifugu
rubripes
Length = 811
Score = 154 bits (373), Expect = 4e-36
Identities = 99/285 (34%), Positives = 158/285 (55%), Gaps = 25/285 (8%)
Query: 64 NDDEITPTGKVVGIIRRKW-RQYCGIL--MPSKFHGATRHLFTPAEKRIPRVRIETR--- 117
N + + T KVV I+ +K R G L +P+K +F+P + R+PR+ +
Sbjct: 183 NREVLQRTAKVVYIVEKKHSRAATGFLKFVPNKPFA----MFSPVDHRVPRINVPLADCP 238
Query: 118 -----QSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHAR 172
++ AS + + +W NS + G L++ + + E E ILLE++V +
Sbjct: 239 EDFRCRAGDYASTLYICRITNWEANSNFAEGRLMKTLGQAGEIEPETEGILLEYEVDFSE 298
Query: 173 FSEAVLNCLPPN-DWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLA 231
FS+ VL CLP N W+IP EE +KR DLR+ C+ ++DP D+DDAL +RL DG
Sbjct: 299 FSDEVLECLPKNLPWSIPPEEIRKRKDLREECIFTIDPATARDLDDALSCKRL--PDG-- 354
Query: 232 TYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSC 291
+EVGVHIADV++FV+ ALD A+ R+T+VYLV + I M+P + + ++
Sbjct: 355 NFEVGVHIADVSYFVEEGGALDIIASQRATSVYLVQKVIPMLP-----RLLCEELCSLNP 409
Query: 292 GEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAID 336
+RL S +W++ +LS F ++II+S ++Y+ AQ I+
Sbjct: 410 LSDRLTLSVIWKVTPEGKILSEWFGRTIIRSCVKLSYDHAQSMIE 454
Score = 39.1 bits (87), Expect = 0.20
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWR 31
I L G + NRA+DGDIV +++ P+++W+
Sbjct: 64 IFLDGIVARNRALDGDIVVVQVLPQDQWK 92
>UniRef50_Q17L93 Cluster: Ribonuclease; n=2; Culicidae|Rep:
Ribonuclease - Aedes aegypti (Yellowfever mosquito)
Length = 1210
Score = 150 bits (363), Expect = 7e-35
Identities = 86/275 (31%), Positives = 160/275 (58%), Gaps = 20/275 (7%)
Query: 72 GKVVGIIRRKWRQYC-GILMPSKFH-GATRHL-FTPAEKRIPRVRIETR-------QSEI 121
G V+ I+ ++ + C G MP K ++++ F P + R+P +R+ + +++
Sbjct: 535 GFVIEILEKRHSRLCVGTFMPFKEKVSQSQYMKFAPRDMRMPFMRVYKQNWPEAIFKNDF 594
Query: 122 LASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCL 181
+ ++ + ++ P+ ++++ + + E++ IL+E+D+ + +SE +LN L
Sbjct: 595 KEIESVIYQAEIIEWHNDIPIANIMKSIGKCGELEVESQAILVEYDLDVSPYSEKILNSL 654
Query: 182 PPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIAD 241
P +++ IPEEE KR DLRD CV ++DP D+DDAL + L + + YE+GVHI+D
Sbjct: 655 PGSEFQIPEEELAKREDLRDECVFTIDPLTARDLDDALSCKILKNGN----YEIGVHISD 710
Query: 242 VTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCV 301
V++F++ + LD+ R+T++Y+VD M+P ++ ++ + GE++LAFS
Sbjct: 711 VSYFLREASELDELVKLRATSIYMVDGVYHMLPKSLC------FLCSLLPGEDKLAFSVF 764
Query: 302 WEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAID 336
WE+ +A VL T+F K++I S + YE AQI +D
Sbjct: 765 WEITPDAKVLKTRFAKTVINSCTQLAYEHAQIMLD 799
>UniRef50_Q09568 Cluster: Uncharacterized ribonuclease F48E8.6; n=2;
Caenorhabditis|Rep: Uncharacterized ribonuclease F48E8.6
- Caenorhabditis elegans
Length = 817
Score = 147 bits (356), Expect = 5e-34
Identities = 110/361 (30%), Positives = 169/361 (46%), Gaps = 37/361 (10%)
Query: 12 NRAIDGDIVAIEIFPKEEW-------------RKPSNIVLEDKTEDPENILEEETVLLDA 58
NRA+ GD+VA++I PKE+W K + + N E+ + +
Sbjct: 88 NRAMQGDVVAVKIKPKEDWLVNYVEYVKWWAEHKKGDRNSGKTDNNSPNKTEKRCLRNEI 147
Query: 59 AKPVDNDDEITPT-----GKVVGIIRRK-WRQYCGILMPSKFHGATRHLFTPAEKRIPRV 112
DE+ + G +V I+ +K +R G L LF + R+PR+
Sbjct: 148 QDNGVTSDEVPDSCLITIGAIVHILEKKHFRVAAGKLQLMPNSANPNVLFVATDSRVPRI 207
Query: 113 RIETRQ--SEILAS----QRILVA--LDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILL 164
I E + +R L + W S Y G LV+L + + D E E I+
Sbjct: 208 LIPKSDVDKEFFSRPKDFERFLYTAKITDWRAESVYADGRLVKLLGMSGEIDTETERIVY 267
Query: 165 EHDVPHARFSEAVLNCLP---PNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHA 221
EH + H FS+ L LP +W +P+ E + R D R V ++DP D+DDALHA
Sbjct: 268 EHQIDHREFSDECLESLPITTAENWKVPDAEFEYRRDFRSDIVFTIDPKTARDLDDALHA 327
Query: 222 RRLGSSDGLAT--YEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSV 279
+ + DG T E+GVHIADVT F+K T LDK A+ R + YL I M+P
Sbjct: 328 KHIDDCDGKGTPGLEIGVHIADVTFFLKEGTELDKWASERGNSTYLSQTVIPMLP----- 382
Query: 280 TTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSS 339
+ + ++ G +RL+FS V++M A + F +S+I+S+ + YE AQ I++
Sbjct: 383 RILCEQLCSLNPGVDRLSFSTVFKMSYEAELYDVWFGRSVIRSRVKLAYEHAQDFIENPE 442
Query: 340 R 340
+
Sbjct: 443 K 443
>UniRef50_A7NV97 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=5; core eudicotyledons|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 844
Score = 147 bits (355), Expect = 7e-34
Identities = 82/253 (32%), Positives = 134/253 (52%), Gaps = 10/253 (3%)
Query: 127 ILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDW 186
+ + W S PL H++ +F + + IL E+ + + FS L+CLP W
Sbjct: 209 VAAQISDWGEESSLPLAHVMHIFGRGGEIEPRIAAILFENAIRPSEFSPESLSCLPHIPW 268
Query: 187 TIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFV 246
+P+EE ++R DLR++C+ ++DP TD+DDAL +L + + VGVHIAD ++FV
Sbjct: 269 KVPQEEIERRRDLRNLCIFTIDPSTATDLDDALSVEKLSGGN----FRVGVHIADASYFV 324
Query: 247 KPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDE 306
PD LD+EA SRST+VYL+ ++ M+P +S + + G +RLAFS W+++
Sbjct: 325 LPDGVLDREAQSRSTSVYLLQHKLPMLPPLLSEN-----LGSLIPGVDRLAFSIFWDINL 379
Query: 307 NANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXXXXXXXXDSG 366
+V+ +++I+S ++YE AQ I D E+ +S + G
Sbjct: 380 AGDVVDRWIGRTVIQSCCKLSYEHAQ-GIIDGMFDVEVIRSIKYLYAISKTLRANRFNDG 438
Query: 367 ALLLASPEIRFQF 379
ALLL ++ F
Sbjct: 439 ALLLDGAKVILLF 451
>UniRef50_Q8IYB7 Cluster: DIS3 mitotic control homolog (S.
cerevisiae)-like 2; n=29; Tetrapoda|Rep: DIS3 mitotic
control homolog (S. cerevisiae)-like 2 - Homo sapiens
(Human)
Length = 619
Score = 146 bits (353), Expect = 1e-33
Identities = 102/326 (31%), Positives = 166/326 (50%), Gaps = 24/326 (7%)
Query: 31 RKPSNIVLEDKTEDPEN-ILEEETVLLDAAKPVDNDDEITPTGKVVGIIRRKW-RQYCGI 88
+K S V E ED + + ++ET + ++ + + KVV I+ +K R G
Sbjct: 191 KKLSVCVSEKGREDGDAPVTKDETTCISQDTRALSEKSLQRSAKVVYILEKKHSRAATGF 250
Query: 89 L--MPSKFHGATRH--LFTPAEKRIPRVRIETR--------QSEILASQRILVALDSWPR 136
L + K R LF+P++ R+PR+ + + + + A+ + + W
Sbjct: 251 LKLLADKNSELFRKYALFSPSDHRVPRIYVPLKDCPQDFVARPKDYANTLFICRIVDWKE 310
Query: 137 NSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPN-DWTIPEEERQK 195
+ + LG L + + + E E IL E+ V + FS VL CLP WTIP EE K
Sbjct: 311 DCNFALGQLAKSLGQAGEIEPETEGILTEYGVDFSDFSSEVLECLPQGLPWTIPPEEFSK 370
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R DLR C+ ++DP D+DDAL + L +DG ++VGVHIADV++FV + LDK
Sbjct: 371 RRDLRKDCIFTIDPSTARDLDDALSCKPL--ADG--NFKVGVHIADVSYFVPEGSDLDKV 426
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
AA R+T+VYLV + + M+P + + ++ ++L FS +W + +L F
Sbjct: 427 AAERATSVYLVQKVVPMLP-----RLLCEELCSLNPMSDKLTFSVIWTLTPEGKILDEWF 481
Query: 316 HKSIIKSKAAMTYEEAQIAIDDSSRK 341
++II+S ++YE AQ I+ + K
Sbjct: 482 GRTIIRSCTKLSYEHAQSMIESPTEK 507
Score = 36.7 bits (81), Expect = 1.0
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWR--KPSNIVLEDKTEDPENILEE 51
I + G + NRA++GD+V +++ P+E W+ KP + E + +I EE
Sbjct: 94 IFIDGVVARNRALNGDLVVVKLLPEEHWKVVKPESNDKETEAAYESDIPEE 144
>UniRef50_UPI00015B4E71 Cluster: PREDICTED: similar to ribonuclease;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
ribonuclease - Nasonia vitripennis
Length = 961
Score = 140 bits (340), Expect = 4e-32
Identities = 80/244 (32%), Positives = 135/244 (55%), Gaps = 19/244 (7%)
Query: 104 PAEKRIPRVRIETR--------QSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDK 155
P + R+P++RI + + L + W + + + G +V++ D
Sbjct: 362 PRDSRVPQLRINPKTVPKHFYDNPDQFKETLFLCDIVDWKKVA-FAEGEIVQIVGSKGDL 420
Query: 156 DAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDI 215
E + ILLE+D+ + + +L LPP+D+ E + R DLR+ C+ ++DP D+
Sbjct: 421 SVETKAILLENDLILTPYEDELLQDLPPSDYIPTEADLADREDLRETCIFTIDPATAVDL 480
Query: 216 DDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPG 275
DDA+ + L + + +EVG+HIADVTHF++ + LDK+ A R+TTVY+VD M+P
Sbjct: 481 DDAMSCKLLENGN----FEVGIHIADVTHFLEAFSPLDKKVAERATTVYMVDNVYHMLPK 536
Query: 276 NVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAI 335
+ + + G+++LAFS + EM +A ++S++F K++I S M Y +AQI I
Sbjct: 537 QLCLA------CSLLPGQDKLAFSVILEMTPSAEIVSSRFAKTVINSCCQMAYGQAQIMI 590
Query: 336 DDSS 339
DD S
Sbjct: 591 DDES 594
>UniRef50_Q5BYX9 Cluster: SJCHGC05889 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC05889 protein - Schistosoma
japonicum (Blood fluke)
Length = 599
Score = 139 bits (336), Expect = 1e-31
Identities = 94/279 (33%), Positives = 141/279 (50%), Gaps = 35/279 (12%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENI-----LEEETVLLD 57
I++ G NRA+DGD+V + + P+ W+ S+ + ++ E I + E + D
Sbjct: 319 IMIHGLQHRNRAVDGDVVIVRLLPRVHWKSVSSDISSQESCMAEVISNLPNMFERKLDED 378
Query: 58 AAKPVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRH--------LFTPAEKRI 109
+K + + P G VVGI+ R WR Y +P KF + TP ++RI
Sbjct: 379 CSKSLQTSSYL-PCGFVVGIVSRNWRDYVCTYVP-KFTDDSSDPKSESGWITVTPWDRRI 436
Query: 110 PRVRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVP 169
P +R+ T Q L +R +V +DSW S YP+GH V+ D + E + IL+EH++
Sbjct: 437 PHIRLHTTQISKLTRERFIVRIDSWDSYSAYPVGHFVQSLGCVGDLETEIQTILIEHNLI 496
Query: 170 HARFSEAVLNCLPP----NDWTIPEEERQKRVDLR-----------DVCVCSVDPPGCTD 214
F++A LN L P W + EE +KR DLR D+ + S+DPPGC D
Sbjct: 497 IRNFTDAQLNELAPLSVQRPWKVDSEEVKKRRDLRSPSISGNPNSEDILIFSIDPPGCQD 556
Query: 215 IDDALHARRLGSS-DGLAT----YEVGVHIADVTHFVKP 248
+DDAL + L + D ++GVHIADV+ FV P
Sbjct: 557 VDDALSVQWLSPTIDEYGAERKRLQLGVHIADVSFFVPP 595
>UniRef50_Q11XW5 Cluster: Exoribonuclease II; n=5; cellular
organisms|Rep: Exoribonuclease II - Cytophaga
hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 750
Score = 138 bits (334), Expect = 2e-31
Identities = 92/315 (29%), Positives = 155/315 (49%), Gaps = 21/315 (6%)
Query: 72 GKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEILAS---QRIL 128
G++V I+ RK + G + + RH F + R V I + I + +++L
Sbjct: 149 GEIVEIVERKRTSFVG-----RIEVSARHAFVVPDGRKMHVDIFIPKEHINGAKTGEKVL 203
Query: 129 VALDSWP-RNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWT 187
V + +WP R+ + P G + + + + E IL E +P+ F V+
Sbjct: 204 VDITAWPTRDEKSPTGKVTEVLGMAGENETEMHAILAEFGLPY-EFPNQVIKAAQDITAE 262
Query: 188 IPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVK 247
E E +KR D+R ++DP D DDA+ + L + + +E+GVHIADV+H+V+
Sbjct: 263 TSEAEIKKRRDMRGTTTFTIDPEDAKDFDDAISFKYLDNGN----WEIGVHIADVSHYVQ 318
Query: 248 PDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDEN 307
P LDKEA R+T+VYLVDR + M+P +S + + E++L FS ++E+D +
Sbjct: 319 PGDTLDKEAYRRATSVYLVDRCVPMLPERLS-----NELCSLRPNEDKLTFSAIFEIDAD 373
Query: 308 ANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXXXXXXXXDSGA 367
A VL F ++II S +YE+AQ I+ +++ ++ K GA
Sbjct: 374 AKVLDEWFGRTIIHSTRRFSYEQAQEVIE--TQQGDLVKELTILNTLAKKMRAQRFKEGA 431
Query: 368 LLLASPEIRFQFFKK 382
+ + E++FQ K
Sbjct: 432 ISFETVEVKFQLDAK 446
>UniRef50_Q2S2D1 Cluster: Ribonuclease R; n=1; Salinibacter ruber
DSM 13855|Rep: Ribonuclease R - Salinibacter ruber
(strain DSM 13855)
Length = 666
Score = 135 bits (327), Expect = 2e-30
Identities = 82/251 (32%), Positives = 131/251 (52%), Gaps = 10/251 (3%)
Query: 125 QRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPN 184
++++V++D + P G ++R+ P+ D + + + DV A F + V
Sbjct: 133 EKVMVSIDRFDDRKASPEGRILRVIGPSDDPNVRVLSLAMSMDVK-ADFPDEVEAEAESI 191
Query: 185 DWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTH 244
IPE+E ++R DLRD V ++DP D DDA+H L + + YEVGVHIADV+H
Sbjct: 192 PVKIPEDEIERRRDLRDKPVFTIDPVDAKDFDDAVHVEELDNGN----YEVGVHIADVSH 247
Query: 245 FVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEM 304
+V+PDTA+D EA R T+VYLVDR I M+P +S + + E++LAFS + E+
Sbjct: 248 YVEPDTAIDAEALERGTSVYLVDRTIPMLPEKLS-----NKVCSLRPHEDKLAFSILMEL 302
Query: 305 DENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXXXXXXXXD 364
+V+ + +++I SK +TY+ AQ I+ D++A
Sbjct: 303 TTEGDVVDYEICETVIHSKERLTYDRAQDYIEGGYPDDKMAADVVQANRLAKTITRRRMQ 362
Query: 365 SGALLLASPEI 375
GA+ S E+
Sbjct: 363 EGAIDFGSDEV 373
>UniRef50_Q8A378 Cluster: Ribonuclease R; n=9; Bacteroidales|Rep:
Ribonuclease R - Bacteroides thetaiotaomicron
Length = 718
Score = 132 bits (319), Expect = 2e-29
Identities = 87/267 (32%), Positives = 137/267 (51%), Gaps = 16/267 (5%)
Query: 72 GKVVGIIRRKWRQYCGILMPSKFHG--ATRHLFTPAEKRIPRVRIETRQSEILASQRILV 129
G+V+ I+ R + G L +K + T + + IP+ +++ ++ + +V
Sbjct: 141 GEVIEILERANDTFVGTLEVAKSYAFLVTENRTLANDIFIPKEKLKGGKT----GDKAIV 196
Query: 130 ALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIP 189
+ WP ++ P+G ++ + D E IL E +P+ + +AV I
Sbjct: 197 KVTEWPDKAKNPIGQVIDILGVAGDNTTEMHAILAEFGLPYV-YPKAVETAADKIPAEIT 255
Query: 190 EEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPD 249
EE +R D R V ++DP D DDAL R + DGL +EVGVHIADVTH+VK
Sbjct: 256 PEEIARREDFRKVTTFTIDPKDAKDFDDALSIRPI--KDGL--WEVGVHIADVTHYVKEG 311
Query: 250 TALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENAN 309
+DKEA R+T+VYLVDR I M+P + +I + EE+LAFS ++++ E
Sbjct: 312 GIIDKEAEKRATSVYLVDRTIPMLPERLC-----NFICSLRPNEEKLAFSVIFDITEKGE 366
Query: 310 VLSTKFHKSIIKSKAAMTYEEAQIAID 336
V ++ ++I S TYEEAQ I+
Sbjct: 367 VRDSRIVHTVINSDRRFTYEEAQQIIE 393
>UniRef50_UPI0000DB782F Cluster: PREDICTED: similar to CG16940-PA,
isoform A; n=1; Apis mellifera|Rep: PREDICTED: similar
to CG16940-PA, isoform A - Apis mellifera
Length = 786
Score = 130 bits (313), Expect = 8e-29
Identities = 73/243 (30%), Positives = 132/243 (54%), Gaps = 18/243 (7%)
Query: 102 FTPAEKRIPRVRIETRQSEILA-------SQRILVALDSWPRNSRYPLGHLVRLFVPTCD 154
F P + R+P V+I + A LV + W + ++ +G + ++ D
Sbjct: 188 FYPRDHRVPLVKINRESLQQFAVCPSSYEDTLYLVVITDWIK-PKFAVGKIEKIVGNIGD 246
Query: 155 KDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTD 214
E+ ILLE+D+ +S ++ LP +D+ + E + + R D R C+ ++DP D
Sbjct: 247 IRTESNAILLEYDLDVTPYSPDIIKGLPSSDYILTENDLRDREDWRQECIFTIDPDAAVD 306
Query: 215 IDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVP 274
+DD++ + L + + YE+GVHI+DVTH+++ + LD + + R+TT+Y+ D M+P
Sbjct: 307 LDDSVSCKILENEN----YEIGVHISDVTHYMEFLSPLDIQVSKRATTIYMTDNVYHMLP 362
Query: 275 GNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIA 334
+ I +S G+++LAFS +WE+ NA ++ +F K+II+S M+Y AQ
Sbjct: 363 KQLC------QICSLSPGQDKLAFSVIWEITRNAEIVKYRFAKTIIRSCCQMSYYHAQKF 416
Query: 335 IDD 337
I++
Sbjct: 417 IEN 419
>UniRef50_Q4SNZ0 Cluster: Chromosome 15 SCAF14542, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 15 SCAF14542, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 766
Score = 127 bits (307), Expect = 4e-28
Identities = 81/218 (37%), Positives = 121/218 (55%), Gaps = 22/218 (10%)
Query: 64 NDDEITPTGKVVGIIRRKW-RQYCGIL--MPSKFHGATRHLFTPAEKRIPRVRI------ 114
N + + T KVV I+ +K R G L +P K +F+P + R+PR+ +
Sbjct: 369 NREVLQRTAKVVYIVEKKHSRAATGFLKFLPDKPFA----MFSPVDHRLPRINVPLTDCP 424
Query: 115 ---ETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHA 171
+R + A+ + + +W NS + G L + + + E E ILLE++V +
Sbjct: 425 EDFRSRPGDC-ANTLFICRITNWEANSNFAEGRLEKTLGQAGEIEPETEGILLEYEVDFS 483
Query: 172 RFSEAVLNCLPPN-DWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGL 230
FS+ VL+CLP N WTIP EE KR DLR C+ ++DP D+DDAL ++L DG
Sbjct: 484 EFSDEVLDCLPKNLPWTIPPEEISKRRDLRKECIFTIDPATARDLDDALSCKQL--PDG- 540
Query: 231 ATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDR 268
+EVGVHIADV++FV+ + LD A R+T+VYLV +
Sbjct: 541 -NFEVGVHIADVSYFVEEGSVLDATAGQRATSVYLVQK 577
Score = 39.1 bits (87), Expect = 0.20
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNI 36
I L G + NRA++GDIV ++I P+++W+ S++
Sbjct: 249 IFLDGIVARNRALNGDIVVVQILPQDQWKVKSDL 282
>UniRef50_Q384J0 Cluster: Exosome complex exonuclease RRP44,
putative; n=3; Trypanosoma|Rep: Exosome complex
exonuclease RRP44, putative - Trypanosoma brucei
Length = 895
Score = 127 bits (307), Expect = 4e-28
Identities = 77/203 (37%), Positives = 109/203 (53%), Gaps = 15/203 (7%)
Query: 138 SRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRV 197
SR+P ++ F A I H + FSE NC+P IP E KR
Sbjct: 244 SRFPTARIISTFGSVHSLRANTFAICSAHHIVTDDFSEEACNCIPDR-LIIPNSEEMKRT 302
Query: 198 DLRDV----CVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALD 253
RD+ VCS+DP D+DDAL L Y VGVHIADV+HFV P +ALD
Sbjct: 303 GRRDLRREEFVCSIDPATARDLDDALSITLLPGG-----YRVGVHIADVSHFVSPGSALD 357
Query: 254 KEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLST 313
+E +R+T+VYLVDR M+P +S +Y L G ++LAFS ++++D N +
Sbjct: 358 EEGRARATSVYLVDRVYHMLPRKLS---EEYCSLHP--GSDKLAFSAIFQLDLNGKLKGE 412
Query: 314 KFHKSIIKSKAAMTYEEAQIAID 336
F KS+I+++ ++Y++AQ ID
Sbjct: 413 WFGKSVIRNRCRLSYDDAQRIID 435
Score = 34.7 bits (76), Expect = 4.2
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPE 46
++++G+ INR + D+VA+++ P E+W + LE +D +
Sbjct: 61 VVVKGYGSINRFLHNDVVAVQLLPMEQWEDVVSGELEPDGDDKD 104
>UniRef50_A6EL71 Cluster: Exoribonuclease II; n=15;
Bacteroidetes|Rep: Exoribonuclease II - unidentified
eubacterium SCB49
Length = 741
Score = 126 bits (305), Expect = 8e-28
Identities = 74/220 (33%), Positives = 121/220 (55%), Gaps = 10/220 (4%)
Query: 125 QRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPN 184
+R+LV + WP + P G++++ + + E IL ++ +P+ F V +
Sbjct: 190 ERVLVEIIDWPEKADSPNGNVIKSLGMPGEHNTEIHSILAQYGLPY-EFPAEVEDYANKI 248
Query: 185 DWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTH 244
D +I E KR D+R ++DP D DDAL L + + YE+G+HIADV+H
Sbjct: 249 DTSIHASEIAKRRDMRKDLTFTIDPKDAKDFDDALSFTELENGN----YEIGIHIADVSH 304
Query: 245 FVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEM 304
++KP T LD EA R+T+VYLVDR + M+P +S + EE+ FS V+EM
Sbjct: 305 YLKPGTVLDDEAFERATSVYLVDRVVPMLPEILSNGA-----CSLRPHEEKYTFSAVFEM 359
Query: 305 DENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEI 344
++ A V++ F +++ S A YEEAQ+ I+++S + +
Sbjct: 360 NKKAEVVNEWFGRTVTYSDARFAYEEAQLIIENNSHPEPV 399
>UniRef50_A0BWE7 Cluster: Chromosome undetermined scaffold_131,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_131,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1184
Score = 126 bits (305), Expect = 8e-28
Identities = 80/206 (38%), Positives = 112/206 (54%), Gaps = 11/206 (5%)
Query: 133 SWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEE 192
SW +NSRYP L++ + D E E IL E+ V FSE + +E
Sbjct: 620 SWAKNSRYPYVELIKEVGVQGNIDVECEAILTENSVYDNEFSEQCKEEMKAFTHNSIAKE 679
Query: 193 RQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTAL 252
R+ R+DLR +CS+DP D+DDAL LG+ YE+GVHIADV+HFV P++ +
Sbjct: 680 RENRMDLRKEYICSIDPVTARDLDDALSINDLGNG----IYEIGVHIADVSHFVLPNSEV 735
Query: 253 DKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLS 312
DKEA R+T+VYLV + I M+P + + ++ ERLAFS ++M VL
Sbjct: 736 DKEAILRTTSVYLVHKVIPMLP-----RILCEELCSLNRDVERLAFSVFFKMTSEGEVLW 790
Query: 313 TKFH--KSIIKSKAAMTYEEAQIAID 336
F KS+IKS A ++Y+ ID
Sbjct: 791 DSFRAAKSVIKSCAQLSYDIVNQLID 816
>UniRef50_Q8KF23 Cluster: Ribonuclease II family protein; n=10;
Chlorobiaceae|Rep: Ribonuclease II family protein -
Chlorobium tepidum
Length = 720
Score = 126 bits (303), Expect = 1e-27
Identities = 71/191 (37%), Positives = 108/191 (56%), Gaps = 10/191 (5%)
Query: 188 IPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVK 247
I +E+ ++R+D+RD V ++DP D DDAL LG+ G Y+VGVHIADV+H+V
Sbjct: 241 ITDEDLKERLDIRDKDVFTIDPVDAKDFDDALSIETLGNGGG---YKVGVHIADVSHYVP 297
Query: 248 PDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDEN 307
++ALDKEA R+T+VYLVDR I M+P +S + ++ G +RLAFS + + +
Sbjct: 298 ENSALDKEARKRATSVYLVDRVIPMLPSRLSEK-----VCSLNPGVDRLAFSVFFNITKK 352
Query: 308 ANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXXXXXXXXDSGA 367
V +FHK++I SK TYE+ Q +D + K + + +SG
Sbjct: 353 GEVTKFEFHKTVIHSKRRFTYEDVQQILD--AGKGDYFRELQALDQLSKKIRAQRMESGG 410
Query: 368 LLLASPEIRFQ 378
L + E+RF+
Sbjct: 411 LEFETEEVRFK 421
>UniRef50_Q8XKU6 Cluster: Ribonuclease R; n=11; Firmicutes|Rep:
Ribonuclease R - Clostridium perfringens
Length = 751
Score = 125 bits (301), Expect = 2e-27
Identities = 87/273 (31%), Positives = 140/273 (51%), Gaps = 17/273 (6%)
Query: 72 GKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEILASQR--ILV 129
G++V I R + GI +K G P ++RI +++ A + ++V
Sbjct: 124 GEIVRITERVNTKVIGIYEDNKSFG----FVLPQDQRIQNDIFISKKDRNGAKKGNVVVV 179
Query: 130 ALDSWPRNSRY-PLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTI 188
+ WP R P G +V + D + ++ ++ +P F VL I
Sbjct: 180 EITKWPDGRRKNPEGVVVEILGNRGDLGLDIITVIKKYALPE-EFPPQVLAFAEEISEEI 238
Query: 189 PEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKP 248
PE E ++R DLRDV + ++D D+DDA+ RL + + Y++GVHIADVTH+VK
Sbjct: 239 PESEIKRRTDLRDVKMVTIDGEDAKDLDDAVSIERLPNGN----YKLGVHIADVTHYVKE 294
Query: 249 DTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENA 308
+ LDKEA R+T+VYLVDR I M+P +S I ++ +RLA +C E+D
Sbjct: 295 NNPLDKEAFKRATSVYLVDRVIPMLPKKLS-----NGICSLNPQVDRLALTCFMEIDHKG 349
Query: 309 NVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRK 341
NV++ H+S+IK+ MTY + + D+ ++
Sbjct: 350 NVVNHSIHESVIKTNERMTYTDVTKILRDNDQE 382
>UniRef50_UPI0000D56C52 Cluster: PREDICTED: similar to CG16940-PA,
isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to CG16940-PA, isoform A - Tribolium castaneum
Length = 844
Score = 124 bits (299), Expect = 4e-27
Identities = 82/251 (32%), Positives = 131/251 (52%), Gaps = 20/251 (7%)
Query: 101 LFTPAEKRIPRVRIETR------QSEILASQRIL--VALDSWPRNSRYPLGHLVRLFVPT 152
LFTP +KRIP+++I QS+ Q IL V + W ++ +Y +G + +
Sbjct: 239 LFTPRDKRIPKIKIPRISWPSGFQSKPQLYQDILFIVKITDW-KDVKYAIGTITENLGLS 297
Query: 153 CDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGC 212
D E+ IL E + F + + LP + I + + R DLR CV ++DP
Sbjct: 298 GDLKIESLAILREFCLDPTPFGDDIRPFLPKST-KISTSDLKNREDLRKECVFTIDPITA 356
Query: 213 TDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDM 272
D+DDAL + L + + YEVGVHI+D + F+ +T LD+ S++TT+Y+VD M
Sbjct: 357 RDLDDALSCKELPNGN----YEVGVHISDASFFLPENTRLDEIVKSKATTIYMVDSVYHM 412
Query: 273 VPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQ 332
+P + + + GE++LAFS WE+ +++ + +S+I S + YE AQ
Sbjct: 413 LPVELC------FHCSLLPGEDKLAFSVFWELTPTGDIVDFRIKRSVINSCVQLAYEHAQ 466
Query: 333 IAIDDSSRKDE 343
+ IDD RK E
Sbjct: 467 VMIDDPDRKFE 477
>UniRef50_Q00X95 Cluster: Exosomal 3'-5' exoribonuclease complex,
subunit Rrp44/Dis3; n=2; Ostreococcus|Rep: Exosomal
3'-5' exoribonuclease complex, subunit Rrp44/Dis3 -
Ostreococcus tauri
Length = 609
Score = 124 bits (298), Expect = 5e-27
Identities = 76/184 (41%), Positives = 98/184 (53%), Gaps = 13/184 (7%)
Query: 160 EVILLEHDVPHARFSEAVLNCLP---PND-WTIPEEERQKRVDLRDVCVCSVDPPGCTDI 215
+VI+ EH + FS CLP P + W IP EE +KR D R+ V S+DPP D+
Sbjct: 3 KVIVDEHRIVSEDFSAQAEACLPKVQPREHWKIPAEEMKKRKDFREKLVFSIDPPTARDL 62
Query: 216 DDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPG 275
DDAL + T VGVHIADV+HFV PDTALD+EA R+TT YLV M+P
Sbjct: 63 DDALSVEVMPEG----TLRVGVHIADVSHFVLPDTALDEEARQRATTTYLVHTIFPMLPR 118
Query: 276 NVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAI 335
+ + ++ G ERL+FS W M V F + +IKS A ++Y Q I
Sbjct: 119 LLCEN-----LCSLNPGVERLSFSVEWVMTREGMVKRVSFTRGVIKSAAKLSYIHVQNVI 173
Query: 336 DDSS 339
D S
Sbjct: 174 DAGS 177
>UniRef50_Q54N92 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1642
Score = 119 bits (287), Expect = 1e-25
Identities = 74/248 (29%), Positives = 132/248 (53%), Gaps = 12/248 (4%)
Query: 106 EKRIPRVRIETRQSEILASQRI----LVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEV 161
EK P V + + S ++R ++ L + ++ Y +G + F D + +
Sbjct: 891 EKSTPTVHLISNLSNSHLAERCGRLSILLLTEFAPDNTYAIGTIQFFFGTPLDLLSISRC 950
Query: 162 ILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHA 221
ILL H V H + ++ + +DW + E ++RVDL + ++DPP TD+DDA+
Sbjct: 951 ILLNHQVFHTEHFQKEIDEVF-DDWLPSDREEERRVDLTHLVPVTIDPPSSTDLDDAISF 1009
Query: 222 RRLGSS--DGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSV 279
R L +G++ +E+G+HI+DV+ F++ + LDKEA R T+YL+ I M+P N+S
Sbjct: 1010 RCLTDEFDEGMSVFEIGIHISDVSAFLEKGSKLDKEAEYRLNTIYLIGSIIPMLPKNLSS 1069
Query: 280 TTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSS 339
+T + Q +R FS + ++ + ++ KF KS ++SK ++YE+AQ I+ +
Sbjct: 1070 STCSLKLYQ-----KRFCFSLLVKIRSDGKIIDYKFCKSNLRSKGHLSYEKAQRIIEKNK 1124
Query: 340 RKDEIAKS 347
E +S
Sbjct: 1125 SNFEQLES 1132
>UniRef50_Q6MYZ1 Cluster: Protein phosphatase ssd1 homologue,
putative; n=18; Pezizomycotina|Rep: Protein phosphatase
ssd1 homologue, putative - Aspergillus fumigatus
(Sartorya fumigata)
Length = 1388
Score = 119 bits (286), Expect = 2e-25
Identities = 74/247 (29%), Positives = 124/247 (50%), Gaps = 22/247 (8%)
Query: 102 FTPAEKRIPRVRIETRQS--------EILASQRILVALDSWPRNSRYPLGHLVRLFVPTC 153
F P +KR+P + I T Q+ + A++ + + WP S +P G LV
Sbjct: 656 FKPTDKRVPLIAIPTEQAPRDFVEKHQEYANRIFVACIKRWPITSLHPFGTLVEQLGEMG 715
Query: 154 DKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEER---QKRVDLRDVCVCSVDPP 210
D E + +L +++ FS+AVL + DW++ E + R D R ++DP
Sbjct: 716 DLKVETDALLRDNNFGADEFSDAVLKSIGWEDWSVSSEGDALLESRRDFRSETTFTIDPS 775
Query: 211 GCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRI 270
G ++D+A H + L +DG E+G+H++D+ HFVK ++ +D+EA R T VYL+DR +
Sbjct: 776 GAIELDNAYHIKPL--ADGKV--EIGIHVSDIAHFVKANSLVDREAKKRGTAVYLMDRLV 831
Query: 271 DMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTK--FHKSIIKSKAAMTY 328
+M+P VS + + ++RL S V+ + + KSIIKS ++Y
Sbjct: 832 NMLPRRVSTE-----LCSLLPEQDRLTVSVVFTANPETGAVDDDVWIGKSIIKSAGRLSY 886
Query: 329 EEAQIAI 335
+E I
Sbjct: 887 DEVNSVI 893
>UniRef50_Q88YG8 Cluster: Ribonuclease R; n=11; Lactobacillales|Rep:
Ribonuclease R - Lactobacillus plantarum
Length = 811
Score = 116 bits (279), Expect = 1e-24
Identities = 80/283 (28%), Positives = 146/283 (51%), Gaps = 16/283 (5%)
Query: 52 ETVLLDAAKPVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPR 111
+ V ++ +P + P GK+V I++R + Q G PS +K++ +
Sbjct: 109 DDVAVEIIRPARPGSDRGPEGKIVSIVKRNYTQIVGAYTPSTDEDGIIGSVEIKDKKLSK 168
Query: 112 VRIETRQSEILASQR--ILVALDSWPRNSRYP---LGHLVRLFVPTCDKDAENEVILLEH 166
++ + ++ I+ + ++P ++++P +G ++ D + ++ +H
Sbjct: 169 YQLLITDQGLHPTEGEVIIAEVAAYP-DAQHPTRMIGIAKQVIGSVDDPGMDVLQVVYQH 227
Query: 167 DVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGS 226
DVP F E V + + +EE+ RVD+ D + ++D D+DDA+ A RL +
Sbjct: 228 DVPSV-FPEEVTDEANRIPDYVTDEEKVGRVDITDQPLVTIDGAESKDLDDAVVAWRLPN 286
Query: 227 SDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYI 286
+ + +GVHIADV+H+V ++ LD+EA R T+VYL DR I M+P +S I
Sbjct: 287 GN----FHLGVHIADVSHYVTENSELDREAFKRGTSVYLTDRVIPMLPRRLS-----NGI 337
Query: 287 LQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYE 329
++ ERLA SC E+D+ +++ K +S+I+S A MTY+
Sbjct: 338 CSLNPDVERLAMSCEMEIDQTGEIVNHKIFQSVIRSHARMTYD 380
>UniRef50_Q1Q6K5 Cluster: Similar to ribonuclease R; n=1; Candidatus
Kuenenia stuttgartiensis|Rep: Similar to ribonuclease R
- Candidatus Kuenenia stuttgartiensis
Length = 730
Score = 114 bits (274), Expect = 4e-24
Identities = 77/266 (28%), Positives = 129/266 (48%), Gaps = 13/266 (4%)
Query: 126 RILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPND 185
+++V + WP P G + + D + I+ + +P A F + V N
Sbjct: 183 KVVVKIVQWPSRHLNPEGEITEILGKEGDPKVDLHSIIYQFKLPQA-FHKKVSNEAEKIS 241
Query: 186 WTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHF 245
IP+EE Q R+DLR + ++DP D DDAL + D +++GVHIADV+++
Sbjct: 242 QEIPQEEIQTRLDLRKKLIITIDPDDAKDFDDALSLEK----DERGNWQLGVHIADVSYY 297
Query: 246 VKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMD 305
VK D+A+DKEA R T+VYL + I M+P +S + + GE+RL S + +D
Sbjct: 298 VKQDSAIDKEARLRGTSVYLPGKVIPMLPEALSNN-----LCSLREGEDRLTKSVLVTID 352
Query: 306 ENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKD--EIAKS-XXXXXXXXXXXXXXX 362
N+L + S+I +TY++A I++ S + E+ K
Sbjct: 353 PEGNILKSTVKHSVINVTKRLTYKQATAIINNESAGNIPEMVKDVLVELAQLAQILFKNK 412
Query: 363 XDSGALLLASPEIRFQFFKKLNIQSI 388
+ GA+ L PE+ + ++ NI+ +
Sbjct: 413 MNRGAIELDLPEVSLKLDEEGNIEKV 438
>UniRef50_UPI00006CBEC4 Cluster: RNB-like protein; n=1; Tetrahymena
thermophila SB210|Rep: RNB-like protein - Tetrahymena
thermophila SB210
Length = 1250
Score = 112 bits (270), Expect = 1e-23
Identities = 78/234 (33%), Positives = 121/234 (51%), Gaps = 21/234 (8%)
Query: 115 ETRQSEILASQRILVA-LDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARF 173
+ +++I S+ +V + W S YP + D + E + +L E +V + F
Sbjct: 655 QVEENDIDISKTYVVGKMKDWSEESYYPQATISECLGERGDIEVECDTLLKEFNVYNQDF 714
Query: 174 SEAVLNCLPP-----ND---WTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLG 225
+ A L ND + IPE E+ R DL +C++DP D+DDAL + L
Sbjct: 715 TPATEEYLNKYREQLNDNGEYVIPESEKNIRWDLTKEIICTIDPHDAKDLDDALSIKYLH 774
Query: 226 SSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYY 285
YE+GVHIADV+HFV+P+T+LD +A R+T+VYLV R I M+P +
Sbjct: 775 DD----IYEIGVHIADVSHFVQPNTSLDDDARLRTTSVYLVHRVIPMLPRLLCEN----- 825
Query: 286 ILQVSCGEERLAFSCVWEMDENANVL---STKFHKSIIKSKAAMTYEEAQIAID 336
+ ++ ERLAF+ ++M EN VL + KS+IKS +Y+ Q+ I+
Sbjct: 826 LCSLNPNVERLAFTVFFQMKENGEVLWDGPIRIGKSVIKSCNKFSYDTVQMMIE 879
>UniRef50_Q6E6C1 Cluster: DIS3 protein-like protein; n=1;
Antonospora locustae|Rep: DIS3 protein-like protein -
Antonospora locustae (Nosema locustae)
Length = 730
Score = 112 bits (270), Expect = 1e-23
Identities = 60/143 (41%), Positives = 85/143 (59%), Gaps = 10/143 (6%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R D R V S+DPP CTDIDDALH + + YE+G+HIADV+HFV+ + +D+E
Sbjct: 427 REDHRSSLVFSIDPPFCTDIDDALHIKVQNTG-----YEIGIHIADVSHFVRKMSVIDRE 481
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
A R T VYL+DRRI+M+P +S I + GEER S + +MD N+
Sbjct: 482 AKKRGTPVYLIDRRIEMLPVFLSSD-----ICSLKSGEERCTMSVLIDMDFEYNIRHASV 536
Query: 316 HKSIIKSKAAMTYEEAQIAIDDS 338
+ ++K + TYE+AQ +D+S
Sbjct: 537 KRCMVKPAFSFTYEQAQRILDES 559
Score = 61.3 bits (142), Expect = 4e-08
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 6/165 (3%)
Query: 2 RILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKP 61
RI++ G +NRA++GDIV +I K K + + E + E + L
Sbjct: 184 RIVICGEQDMNRALNGDIVYAKI--KHMHAKEETVSCDASQE--ASFDERDFAFLKEENK 239
Query: 62 VDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRH--LFTPAEKRIPRVRIETRQS 119
D G++VGI RR+ ++ G L+ S L + ++RIP VRI T
Sbjct: 240 ADTGATSLICGRIVGIYRRRHQELVGTLVESSGSDTDPQMVLVSSMDRRIPPVRIRTSSV 299
Query: 120 EILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILL 164
+ L +RI+ + W R+S P G R D D E + +LL
Sbjct: 300 DDLEGKRIVFRIVGWERDSLNPQGQYQRTLGCVGDLDCEVKSLLL 344
>UniRef50_Q9WZI1 Cluster: Ribonuclease R; n=5; Thermotogaceae|Rep:
Ribonuclease R - Thermotoga maritima
Length = 710
Score = 110 bits (265), Expect = 5e-23
Identities = 78/277 (28%), Positives = 135/277 (48%), Gaps = 16/277 (5%)
Query: 70 PTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEILA--SQRI 127
P G+VV ++ R ++ G+ H T P + +I ++ A +Q++
Sbjct: 121 PRGRVVRVLERGLKRVVGVFD----HKGTFGFVVPDDPKIAYDFYVAPENIDGAKPNQKV 176
Query: 128 LVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPH-ARFSEAVLNCLPPNDW 186
+ + +P + P +V++ D + ++++HD+P F E V+
Sbjct: 177 IAEILKYPSPGKNPEAKVVKVLGDLDDPSIDLPSVIVKHDLPEPGEFPEEVIREANAIPA 236
Query: 187 TIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFV 246
+ +++ R DLRD + ++D D DDA+ +L + + Y +GVHIADV+H+V
Sbjct: 237 RVRKKDLVGRKDLRDKVIVTIDGEDAKDFDDAISVEKLPNGN----YLLGVHIADVSHYV 292
Query: 247 KPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDE 306
K +ALD+EA R T+VYL+D I M+P +S I + G++RL S E+D
Sbjct: 293 KEGSALDQEAFKRGTSVYLIDTVIPMLPFRLS-----NGICSLVEGKDRLTMSVEMEIDR 347
Query: 307 NANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDE 343
+ V+ + S+IKSK M YE ++D S E
Sbjct: 348 DGRVVRYDVYPSVIKSKKRMIYERVNEFLEDPSSMKE 384
>UniRef50_Q9RXG0 Cluster: Ribonuclease; n=3; Deinococcus|Rep:
Ribonuclease - Deinococcus radiodurans
Length = 760
Score = 109 bits (263), Expect = 9e-23
Identities = 82/265 (30%), Positives = 131/265 (49%), Gaps = 15/265 (5%)
Query: 70 PTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEILASQRILV 129
P VV I++R ++Q G L S H + A RI + + E+ A R++
Sbjct: 132 PRATVVRIVQRAYKQLVGTLEFSHGHPILKPDDFRARHRI--LLLPEGLEELEAGARVVT 189
Query: 130 ALDSWPRNSRYP--LGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWT 187
L WP ++ G +VR+ D + E E ++++ + F + V
Sbjct: 190 EL-FWPEHTGEDEVFGQVVRVLGAEDDPETETEAVIVKFGL-RGEFPDDVQEQANAIPGE 247
Query: 188 IPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVK 247
IPEE R+DLR+ + +VD D DDA+H + + +G + VGVHIADV+H+V+
Sbjct: 248 IPEEALVGRLDLREFNIFTVDGRDAKDFDDAIHIQP--TPEG--NFVVGVHIADVSHYVQ 303
Query: 248 PDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDEN 307
T LD EA +R+T+VYL R + M+P ++S Q +RL + + E+
Sbjct: 304 EGTPLDGEAYARATSVYLPGRVLPMLPEHLSNGVCSLVPYQ-----DRLTMTALVELSAE 358
Query: 308 ANVLSTKFHKSIIKSKAAMTYEEAQ 332
++L K S+I SKA +TY+E Q
Sbjct: 359 GDILDVKLSPSVINSKARLTYDEVQ 383
>UniRef50_Q7P474 Cluster: Exoribonuclease II; n=3; Fusobacterium
nucleatum|Rep: Exoribonuclease II - Fusobacterium
nucleatum subsp. vincentii ATCC 49256
Length = 701
Score = 109 bits (263), Expect = 9e-23
Identities = 87/297 (29%), Positives = 148/297 (49%), Gaps = 22/297 (7%)
Query: 43 EDPENILEEETVLLDAAKPVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLF 102
E+ N L+ +TVL++ + ND G+VV II R+ GIL SK
Sbjct: 99 EEFNNALDGDTVLVELTEKKINDKGAE--GRVVKIIERRKNTVIGILERSKDFAFVMPTG 156
Query: 103 T-PAEKRIPRVRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEV 161
+ + IP +I+ + L + V + W NSR P G ++++ + + E
Sbjct: 157 SFGRDIYIPNSQIKNAANNDL----VAVEITFWGDNSRKPEGKVIKILGSSTNSKNMIEA 212
Query: 162 ILLEHDVPHARFSEAV--LNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDAL 219
++ + +EA+ N + N + + KR DL ++ + ++D D+DDA+
Sbjct: 213 LIYREGLSEKFSNEAMQQTNSIIANS----KIDYTKRKDLTNLSIITIDGADAKDLDDAV 268
Query: 220 HARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSV 279
+ +L + + Y++ V IADV+++VK DT LD EA +R +VYLVDR + M P +S
Sbjct: 269 YVEKLENGN----YKLIVAIADVSYYVKKDTVLDLEARNRGNSVYLVDRVLPMFPKEIS- 323
Query: 280 TTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAID 336
I ++ EE+L FSC E+D V++ + +KS+I+S MTY+ +D
Sbjct: 324 ----NGICSLNEKEEKLTFSCEMEIDLKGKVVNYEVYKSVIRSVHRMTYKAVNGILD 376
>UniRef50_Q0B076 Cluster: Exoribonuclease II; n=1; Syntrophomonas
wolfei subsp. wolfei str. Goettingen|Rep:
Exoribonuclease II - Syntrophomonas wolfei subsp. wolfei
(strain Goettingen)
Length = 705
Score = 109 bits (261), Expect = 2e-22
Identities = 79/273 (28%), Positives = 133/273 (48%), Gaps = 21/273 (7%)
Query: 70 PTGKVVGIIRRKWRQYCGILMPSKFHGATRHLF--TPAEKR--IPRVRIETRQSEILASQ 125
P G V+ I+ R R+ G RHL P + R P +R+ +
Sbjct: 123 PEGTVIRILARNTRELVGTFTKG------RHLLQVVPDDSRQIYPIYVKASRKWKAKEGD 176
Query: 126 RILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPND 185
++LV + SWP + G +V + + + +V+ +H + F + V+
Sbjct: 177 KVLVRISSWPERDKVAEGKIVEVLGRKGEAGVDLKVLAKKHGL-RLEFPDNVMEEARNVA 235
Query: 186 WTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHF 245
+ EE +R DLR+ + ++D D+DDA+ + +S G Y++GVHIADV+H+
Sbjct: 236 VEVNAEEISRRRDLREWRMVTIDGEDAKDLDDAVSIEK--TSKG---YKLGVHIADVSHY 290
Query: 246 VKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMD 305
VK D LD+EA R T+VYL+D+ + M+P +S I ++ ERLA SC+ ++D
Sbjct: 291 VKEDCKLDREAFKRGTSVYLIDKVLPMLPVELSNN-----ICSLNPQVERLAISCIMDID 345
Query: 306 ENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDS 338
V+ + KS+I+ MTY + + D+
Sbjct: 346 SWGQVVDYEIVKSVIQINERMTYSDVNRILADN 378
>UniRef50_A6BJ76 Cluster: Putative uncharacterized protein; n=2;
Clostridiales|Rep: Putative uncharacterized protein -
Dorea longicatena DSM 13814
Length = 741
Score = 109 bits (261), Expect = 2e-22
Identities = 78/265 (29%), Positives = 135/265 (50%), Gaps = 22/265 (8%)
Query: 73 KVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEILASQRILVALD 132
KVVG+ R K + G ++P + +F P EK R ++ +++V L
Sbjct: 162 KVVGLYRMKPGKKFGFVIPDN-QRLDQDIFVPIEKS--RGAVD--------GHKVVVELT 210
Query: 133 SWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEE 192
S+ N + P G +V + D + I+ +++P F + VL + E +
Sbjct: 211 SYGENGKKPEGKIVEIIGHLNDPGTDIMSIVKGYNLP-VEFPDKVLRQAERVAKPVSEAD 269
Query: 193 RQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTAL 252
R DLRD + ++D D+DDA+ + G + Y +GVHIADVT++V+ ++AL
Sbjct: 270 MNGRKDLRDWQMVTIDGEDAKDLDDAVSLVKEGEN-----YILGVHIADVTNYVQENSAL 324
Query: 253 DKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLS 312
D+EA R T+VYLVDR I M+P T+ + ++ GE+RLA SC+ +D + +V++
Sbjct: 325 DREALERGTSVYLVDRVIPMLP-----HTLSNGMCSLNAGEDRLALSCIMTVDPSGDVIA 379
Query: 313 TKFHKSIIKSKAAMTYEEAQIAIDD 337
+ +++I M+Y + + D
Sbjct: 380 HEIAETVIHVDRRMSYTSVKKILTD 404
>UniRef50_Q67SL9 Cluster: Ribonulease R; n=7; Firmicutes|Rep:
Ribonulease R - Symbiobacterium thermophilum
Length = 834
Score = 107 bits (258), Expect = 4e-22
Identities = 85/272 (31%), Positives = 130/272 (47%), Gaps = 18/272 (6%)
Query: 70 PTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPR-VRIETRQSEILAS-QRI 127
P G+V+ I+ R + G SK H A P +KR+P + I + S +++
Sbjct: 120 PEGEVIRILERANARVVGTFETSK-HLA---YVVPDDKRLPEDIYIPKGMTNGARSGEKV 175
Query: 128 LVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWT 187
+V + WP R G +V D + I+ +H +P A F AVL
Sbjct: 176 VVQIVRWPDARRGAEGRVVERLGMKGDVGVDIVSIIRKHGLPEA-FPAAVLQEAEQVPEA 234
Query: 188 IPEEERQK--RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHF 245
+ EE + R DLRD + ++D D+DDA+ RL +++GVHIADV +
Sbjct: 235 VTEEALNEPGRRDLRDWTIVTIDGEDAKDLDDAVSVVRLAPD----RWQLGVHIADVAAY 290
Query: 246 VKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMD 305
V +ALD+EA R T+VYL DR + M+P +S I ++ G +RL SCV E+D
Sbjct: 291 VPEGSALDREAYRRGTSVYLADRVVPMLPPRLS-----NGICSLNPGVDRLTLSCVMEID 345
Query: 306 ENANVLSTKFHKSIIKSKAAMTYEEAQIAIDD 337
V S S+I++ A +TY ++D
Sbjct: 346 GRGEVRSYAIFPSVIRTAARLTYTRVNAILND 377
>UniRef50_Q5SJU8 Cluster: Exoribonuclease; n=2; Thermus
thermophilus|Rep: Exoribonuclease - Thermus thermophilus
(strain HB8 / ATCC 27634 / DSM 579)
Length = 744
Score = 107 bits (258), Expect = 4e-22
Identities = 89/313 (28%), Positives = 140/313 (44%), Gaps = 23/313 (7%)
Query: 70 PTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEILA-SQRIL 128
P G V +++R + G L K R L P E +P + + E L RI+
Sbjct: 108 PWGVVERVLKRARERLVGTLDFRK----GRALLLPDEPNLPELPLAPEGLEGLKRGSRIV 163
Query: 129 VALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTI 188
V + R P G + + E E ++ ++ + A F E VL I
Sbjct: 164 VQVHYGKR----PYGTFLAYLGEGEAPETETEAVIAKYGL-RAEFPEEVLKEAEAIPLEI 218
Query: 189 PEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKP 248
PE E ++R D R + V ++D D DDA+H RL Y +GVHIADV+H+VK
Sbjct: 219 PEAELRRREDFRGLRVFTIDGVDAKDFDDAIHVERLPGG-----YRIGVHIADVSHYVKE 273
Query: 249 DTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENA 308
+ LD+EA R T+VYL R + M+P +S + + GE+RL S + ++ E+
Sbjct: 274 GSLLDQEAFLRGTSVYLPGRVLPMLPERLS-----NGVCSLRPGEDRLVLSVLVDLTEDL 328
Query: 309 NVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDE---IAKSXXXXXXXXXXXXXXXXDS 365
V +F + +I+S A +TY E + + +E +A+
Sbjct: 329 KVKRVRFREGVIRSVARLTYTEVEAFAEGFGLPEEHAFLAEDLRLLLDLTQRMREKRLKE 388
Query: 366 GALLLASPEIRFQ 378
GAL A PE++ +
Sbjct: 389 GALDFAFPEVKVE 401
>UniRef50_Q6MCC7 Cluster: Putative ribonuclease R; n=1; Candidatus
Protochlamydia amoebophila UWE25|Rep: Putative
ribonuclease R - Protochlamydia amoebophila (strain
UWE25)
Length = 775
Score = 106 bits (254), Expect = 1e-21
Identities = 83/273 (30%), Positives = 129/273 (47%), Gaps = 22/273 (8%)
Query: 70 PTGKVVGIIRRKWRQYCGILMP-SKFHGATRHLFTPAEKRIPRVRIE-TRQSEILASQRI 127
P GK+V I+ R GI+ K H+ P RV + T + ++ RI
Sbjct: 152 PEGKIVAILSRGRTHMAGIIRQLDKDRMFIAHV--PLLGTQQRVVVHPTEEHQLQIGDRI 209
Query: 128 LVALDSWPRNSRYPL----GHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPP 183
++ + W + +L + P+CD A E L D A EA N L
Sbjct: 210 VMEVIDWGSKETETICRFSHYLGHISDPSCDVYAAIEEFELRSDFQTAAIEEA--NNLGK 267
Query: 184 NDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVT 243
+ + +++ Q R DLR++ ++DP D DDAL R D Y + VHIADV+
Sbjct: 268 S---VSKKDIQNREDLRELISLTIDPDTAKDFDDALSLTR----DAEGIYNLAVHIADVS 320
Query: 244 HFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWE 303
H+V+P TALD+EA +R + Y + M+PG +S + + RLA S +
Sbjct: 321 HYVQPGTALDEEAKARCNSTYFPGYCVPMLPGALSEN-----LCSLRPNVNRLAVSVLMR 375
Query: 304 MDENANVLSTKFHKSIIKSKAAMTYEEAQIAID 336
+D + N+L +F +S+IKS TY+EA+ +D
Sbjct: 376 IDSSGNLLDYRFTRSVIKSAKRFTYKEAKKVLD 408
>UniRef50_Q39GY3 Cluster: 3'-5' exoribonuclease, VacB and RNase
II/Ribonuclease R; n=33; Burkholderiales|Rep: 3'-5'
exoribonuclease, VacB and RNase II/Ribonuclease R -
Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 828
Score = 105 bits (253), Expect = 2e-21
Identities = 82/296 (27%), Positives = 142/296 (47%), Gaps = 19/296 (6%)
Query: 46 ENILEEETVLLDAAKPVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPA 105
+ ++ + VL A+ V D P G VV + R ++ G L+ +GA + P
Sbjct: 105 QKVMHNDRVL---ARIVGYDRRGRPEGHVVEVTERANKRVIGRLLNE--NGAL--IVAPE 157
Query: 106 EKRIPR-VRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILL 164
+KRI + I + Q ++V L +P PLG +V + D E E+ +
Sbjct: 158 DKRIGHDILITQNVKKAKVGQVVVVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVR 217
Query: 165 EHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHAR-- 222
++ VPH FS+ L+ + + + RVDLRDV + ++D D DDA++
Sbjct: 218 KYGVPH-EFSQPALDEAAALPDKVRPTDLRFRVDLRDVPLVTIDGEDARDFDDAVYCEPV 276
Query: 223 RLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTV 282
++G DG Y + V IADV+H+V+P + LD +A RST+VY R I M+P +S
Sbjct: 277 KVGRGDG---YRLIVAIADVSHYVQPGSGLDADALERSTSVYFPRRVIPMLPEKLS---- 329
Query: 283 KYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDS 338
+ ++ +R +C + + + +F+ ++I S A +TY E + ++
Sbjct: 330 -NGLCSLNPQVDRCVLACDMVITARGEIKAYQFYPAVIHSAARLTYTEVAAVLSNT 384
>UniRef50_Q01VX0 Cluster: Ribonuclease R; n=1; Solibacter usitatus
Ellin6076|Rep: Ribonuclease R - Solibacter usitatus
(strain Ellin6076)
Length = 762
Score = 105 bits (253), Expect = 2e-21
Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 13/230 (5%)
Query: 102 FTPAEKRIPRVRI---ETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAE 158
F PA + R+ + + E L + V + + P+G +V + D +
Sbjct: 171 FPPAGASVDRIGVTAPKVATVEQLDGMIVNVEIMEYAGRGESPVGRVVEILGHPDDFGVD 230
Query: 159 NEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDA 218
E+++ +H +PH +F V+ IP E + R D R + + ++D D DDA
Sbjct: 231 VEIVIRKHHLPH-QFPPEVIEQAQAIPGVIPPAEFEGRRDFRGMDIVTIDGETARDFDDA 289
Query: 219 LHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVS 278
+ +L S + Y + VHIADV+H+V+P T +D+EA R T+VY DR + M+P +S
Sbjct: 290 VWVDKLPSGN----YVLHVHIADVSHYVRPGTPIDREALLRGTSVYFPDRAVPMLPFELS 345
Query: 279 VTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTY 328
L E+RL S + E+D V+ +F + +I+S A MTY
Sbjct: 346 TNLCSLVPL-----EDRLVLSALMEIDHRGEVVRQEFTEGVIRSVARMTY 390
>UniRef50_Q1IJI5 Cluster: Ribonuclease R; n=1; Acidobacteria
bacterium Ellin345|Rep: Ribonuclease R - Acidobacteria
bacterium (strain Ellin345)
Length = 827
Score = 105 bits (252), Expect = 2e-21
Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 10/223 (4%)
Query: 106 EKRIPRVRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLE 165
+ R+ + R+ L + + V + WP ++ P G +V + D + E+++ +
Sbjct: 193 QDRVIGTEAKRREWTDLDNLVVNVEITEWPSPTQSPRGRVVEILGYEDDFGVDTEIMIRK 252
Query: 166 HDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLG 225
H +PH +F AVL+ IP +E + R D R++ + ++D D DDA+ L
Sbjct: 253 HHLPH-QFPAAVLSEARSFSPEIPAKEIKHRRDYRELPIVTIDGETARDFDDAVLVSHLP 311
Query: 226 SSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYY 285
+ + +E+ VHIADV H+V ++ +D EA R T+VY DR + M+P +S
Sbjct: 312 NGN----FELQVHIADVAHYVTDESDIDLEARLRGTSVYFPDRAVPMLPLELSTD----- 362
Query: 286 ILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTY 328
I + ERL SCV E+D ++ + ++ +I+S MTY
Sbjct: 363 ICSLRPQVERLVLSCVMEIDHQGEIVGYELNEGVIRSAERMTY 405
>UniRef50_Q4Q8M6 Cluster: Ribonuclease II-like protein, putative;
n=4; Leishmania|Rep: Ribonuclease II-like protein,
putative - Leishmania major
Length = 942
Score = 105 bits (252), Expect = 2e-21
Identities = 73/176 (41%), Positives = 102/176 (57%), Gaps = 22/176 (12%)
Query: 173 FSEAVLNCLPPNDWTIP---EEERQKRVDLRDV-CVCSVDPPGCTDIDDALHARRLGSSD 228
FSE C+P D+TIP E R DLRD V ++DP D+DDAL + D
Sbjct: 282 FSEEAEACVP-KDFTIPSAAELADMGRRDLRDSEFVLTIDPATARDLDDALSIKP--RKD 338
Query: 229 GLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQ 288
G Y VGVHIADV+HFV P TALD+EA RS + YLVDR I M+P +S +Y
Sbjct: 339 G--GYHVGVHIADVSHFVLPRTALDEEAQRRSNSTYLVDRVIPMLPSRLS---EEY--CS 391
Query: 289 VSCGEERLAFSCVWEMDENANVLSTK--------FHKSIIKSKAAMTYEEAQIAID 336
++ GE++ AFS ++E D + +++S F +S+I+S+ + YE+AQ +D
Sbjct: 392 LNPGEDKFAFSGLFEFDRDGHLISEAATEEKCEWFGQSVIRSRCRLAYEQAQQILD 447
>UniRef50_UPI0000E47D08 Cluster: PREDICTED: similar to PPAR-alpha
interacting complex protein 285; n=8; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to PPAR-alpha
interacting complex protein 285 - Strongylocentrotus
purpuratus
Length = 3249
Score = 105 bits (251), Expect = 3e-21
Identities = 82/260 (31%), Positives = 127/260 (48%), Gaps = 21/260 (8%)
Query: 92 SKFHGATRHLFTPAEKRIPRVRI--ETRQSEILASQR----ILVALDSWPRNSRYPLGHL 145
SK + A LF +KR+ R E+ ++R +V W + YPLG
Sbjct: 1825 SKKNAAVVTLFEIKKKRVQTQNACSSRRDVEVKHAERHQKLFVVRYLEWAHMAPYPLGAA 1884
Query: 146 VRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLP--PNDWTIPEEERQKRVDLRDV- 202
V P + ++ L + + S A P W++P+E QKR D R
Sbjct: 1885 VEELEPGNTEQKGLTILRLVYGIKAQCKSGARKQMQQDFPEGWSLPDEAVQKREDFRTTK 1944
Query: 203 CVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTT 262
+ +VDPPG TD+DDA+ L YEVG+HIADV++F+ D+ +DK+A R TT
Sbjct: 1945 TIFTVDPPGSTDLDDAISCVCLPGQ----RYEVGIHIADVSYFIHQDSFMDKDAYKRGTT 2000
Query: 263 VY--LVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLS-TKFHKSI 319
Y M+P +V +L + G++RLA S ++ +D +V++ F +S+
Sbjct: 2001 FYHPFQGDAYHMLPKDVISR-----LLSLLPGQDRLALSVIFILDHEGHVVAEPMFRRSV 2055
Query: 320 IKSKAAMTYEEAQIAIDDSS 339
I+S +TYEEA+ I DS+
Sbjct: 2056 IQSCKRLTYEEAEKLIVDSN 2075
>UniRef50_Q6C1S7 Cluster: Yarrowia lipolytica chromosome F of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome F of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 1212
Score = 104 bits (249), Expect = 5e-21
Identities = 73/254 (28%), Positives = 118/254 (46%), Gaps = 23/254 (9%)
Query: 102 FTPAEKRIPRVRIETRQS--------EILASQRILVALDSWPRNSRYPLGHLVRLFVPTC 153
F P +KR+P + I T Q+ E A+ ++ WP S +P G LV
Sbjct: 516 FKPTDKRVPLIAIPTEQAPKDFVENHESYANTLFAASIKRWPITSLHPFGTLVEEIGDAN 575
Query: 154 DKDAENEVILLEHDVPHARFSEAVLNCLPPNDWT---IPEEERQKRVDLRDVCVCSVDPP 210
D + + E IL +++ F ++ L +P T + +EE + R D + + P
Sbjct: 576 DDEIQIEAILRDNNFTADVFPDSALRAVPEETATGTPLTDEETEGRRDFTEEYTLGLSPN 635
Query: 211 GCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRI 270
G D A H ++LG E+GVH+ DVTH+V+ ++ALD+EA R ++ +LV R +
Sbjct: 636 GIL-ADQAFHIKKLGDDK----IELGVHVLDVTHYVQSNSALDREAKKRGSSCFLVQRDL 690
Query: 271 DMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENA-NVLSTKFHKSIIKSKAAMTYE 329
+M P N + ++ G RL S V+E+D +V T S I +K + Y
Sbjct: 691 NMFPDNFNSN------FALTPGNNRLTISVVFEIDATTFDVSDTWIGTSYINTKQKLDYA 744
Query: 330 EAQIAIDDSSRKDE 343
+ DD D+
Sbjct: 745 TVERIFDDKGGDDK 758
>UniRef50_O32231 Cluster: Ribonuclease R; n=63; Firmicutes|Rep:
Ribonuclease R - Bacillus subtilis
Length = 779
Score = 104 bits (249), Expect = 5e-21
Identities = 77/269 (28%), Positives = 135/269 (50%), Gaps = 17/269 (6%)
Query: 72 GKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEILASQ--RILV 129
G V+ I+ R ++ G ++ G P +K+I + + A++ +++V
Sbjct: 127 GTVIRILERAIQRVVGTYTETRNFG----FVIPDDKKITSDIFIPKNGKNGAAEGHKVVV 182
Query: 130 ALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIP 189
L S+P G + + D + ++ +H +P ++A+ D TI
Sbjct: 183 KLTSYPEGRMNAEGEVETILGHKNDPGIDILSVIHKHGLPGEFPADAMEQASSTPD-TID 241
Query: 190 EEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPD 249
E++ + R DLRD + ++D D+DDA+ +L DG +Y++GVHIADV+H+V +
Sbjct: 242 EKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKL--DDG--SYKLGVHIADVSHYVTEN 297
Query: 250 TALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENAN 309
+ +DKEA R T+VYLVDR I M+P +S I ++ +RL SC ++
Sbjct: 298 SPIDKEALERGTSVYLVDRVIPMIPHRLSNG-----ICSLNPKVDRLTLSCEMTINSQGQ 352
Query: 310 VLSTKFHKSIIKSKAAMTYEEA-QIAIDD 337
V + +S+IK+ MTY + +I +DD
Sbjct: 353 VTEHEIFQSVIKTTERMTYSDVNKILVDD 381
>UniRef50_A5KIG0 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 735
Score = 103 bits (248), Expect = 6e-21
Identities = 77/271 (28%), Positives = 130/271 (47%), Gaps = 17/271 (6%)
Query: 72 GKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKR-IPRVRIET-RQSEILASQRILV 129
GK+VGII G+ K G R P R + + I + R+ + +++V
Sbjct: 158 GKIVGIISHGVTHIVGLYEKCKSFGFVR----PDNCRYVNDIYIPSGREMGAVTGHKVVV 213
Query: 130 ALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIP 189
+ S+ P G + ++ D + I+++ + F E VLN +
Sbjct: 214 EMTSYGGEHMKPEGKVTQIIGHVNDPGTDILSIVMDLGIK-TEFPEKVLNQAVRVGKPVS 272
Query: 190 EEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPD 249
E +R R DL +V + ++D D+DDA+ R G + Y +GVHIADVT++V+
Sbjct: 273 EADRAGRKDLTNVKMVTIDSEDAKDLDDAVSVERDGEN-----YVLGVHIADVTNYVQEK 327
Query: 250 TALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENAN 309
+ALD+EA R T+VYL DR I M+P +S + ++ GEERLA SC+ +
Sbjct: 328 SALDREALERGTSVYLADRVIPMLPHILS-----NGVCSLNAGEERLALSCIMTISPKGE 382
Query: 310 VLSTKFHKSIIKSKAAMTYEEAQIAIDDSSR 340
++S + +S+I M+Y + ++ +
Sbjct: 383 MISHEITESVICVDKRMSYNKVSAVLEQDEQ 413
>UniRef50_A5IXZ7 Cluster: Ribonuclease R (VacB-like (Shigella
flexneri)ribonuclease II); n=1; Mycoplasma
agalactiae|Rep: Ribonuclease R (VacB-like (Shigella
flexneri)ribonuclease II) - Mycoplasma agalactiae
Length = 729
Score = 103 bits (248), Expect = 6e-21
Identities = 84/295 (28%), Positives = 142/295 (48%), Gaps = 24/295 (8%)
Query: 49 LEEETVLLDAAKPVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEK- 107
L + V D +P+ D+ T KV II R+ + G+L +G F P E
Sbjct: 107 LNNDIVEADVFEPISPDNNRT-FAKVKKIIERRCKTLIGVL--DNVNGFVT--FKPIEPI 161
Query: 108 -RIPRVRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEH 166
+ RI+ SE ++ + ++ ++ ++++ D A + +
Sbjct: 162 YKNTSFRIKNIASEARVLDVVVAEIINYENRNKEI--NIIKRITDVNDPMAYVKSLEEAR 219
Query: 167 DVPH---ARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARR 223
+VP A +E + +P N I E+ R DLR+ V ++D D DDA+ +
Sbjct: 220 NVPREFPAEVNEYIQKFIPEN---IKNEDLSMRTDLRNDLVVTIDGSSTKDFDDAISVVK 276
Query: 224 LGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVK 283
+ + TYE+GVHIADV ++VK +T LD EA R T++YL++ + M+P +S
Sbjct: 277 IDEN----TYELGVHIADVAYYVKENTPLDDEALKRGTSIYLLNEVVPMLPFKLS----- 327
Query: 284 YYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDS 338
I ++ EERL SC+ ++++ + TK S+IKSK +TYE I++S
Sbjct: 328 NGICSLNPNEERLTISCITKINKLGQSIETKIVPSVIKSKYRLTYERVNEFINES 382
>UniRef50_A1WUS9 Cluster: Ribonuclease R; n=2;
Ectothiorhodospiraceae|Rep: Ribonuclease R -
Halorhodospira halophila (strain DSM 244 / SL1)
(Ectothiorhodospirahalophila (strain DSM 244 / SL1))
Length = 842
Score = 103 bits (248), Expect = 6e-21
Identities = 79/285 (27%), Positives = 132/285 (46%), Gaps = 17/285 (5%)
Query: 59 AKPVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQ 118
A+ D+ TP G++V I+ R RQ G HG P KR+ + +
Sbjct: 135 ARITGRDEHGTPQGELVEILERGNRQITGRFFEE--HGVG--FLVPENKRLQQDVLLAPD 190
Query: 119 SEILASQRILVALD--SWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEA 176
A L + + P R P+G ++++ T E+ V H +P +E
Sbjct: 191 GRGGAEDGELAVAEILAQPNERRQPIGRIIQVLGRTIHVGEEDMVAARIHGIPMDWPAEV 250
Query: 177 VLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVG 236
+ +PE +++ R DLR + + ++D D DDAL+ + +
Sbjct: 251 EKEVAAFGE-EVPEADKEGRTDLRRLPLVTIDGADAKDFDDALYCEPTAKG-----WRLV 304
Query: 237 VHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERL 296
V IADV+H+V+P TALD+EA R +VY + M+P +S + ++ +RL
Sbjct: 305 VAIADVSHYVRPGTALDQEARLRGNSVYFPRSVVPMLPEALSNG-----LCSLNPKVDRL 359
Query: 297 AFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRK 341
A C + N VL ++F++++I+S A +TYE+A A+ D RK
Sbjct: 360 AMVCDMLLQGNGKVLRSRFYRAVIQSAARLTYEQAAAAVVDGDRK 404
>UniRef50_UPI0000E47E78 Cluster: PREDICTED: similar to PPAR-alpha
interacting complex protein 285; n=3; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to PPAR-alpha
interacting complex protein 285 - Strongylocentrotus
purpuratus
Length = 3256
Score = 103 bits (247), Expect = 8e-21
Identities = 71/215 (33%), Positives = 112/215 (52%), Gaps = 21/215 (9%)
Query: 134 WPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDV-----PHARFSEAVLNCLPPNDWTI 188
WP + YPLG V+ + ++ L H + P AR E +L P W++
Sbjct: 1851 WPPKAPYPLGEAVKELDHGDTERKGLNILQLVHGIRTQCEPAAR--EQMLQDFPEG-WSL 1907
Query: 189 PEEERQKRVDLRDV-CVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVK 247
P++ QKR D R + +VDPPG TD+DDA+ L YEVGVHI D ++F++
Sbjct: 1908 PDKAVQKREDFRTTKTIFTVDPPGSTDLDDAISCDCLPGQ----RYEVGVHIVDASYFIQ 1963
Query: 248 PDTALDKEAASRSTTVY--LVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMD 305
D+++DK+A R TT Y M+P +V +L + ++RLA S ++ +D
Sbjct: 1964 QDSSMDKDAYKRGTTFYHPFQSDAYHMLPKDVISR-----LLSLLPEQDRLALSVIFTLD 2018
Query: 306 ENANVLS-TKFHKSIIKSKAAMTYEEAQIAIDDSS 339
+++ F +S+I+S +TY+EA+ I DSS
Sbjct: 2019 HEGQIVAEPMFRRSVIRSCQRLTYDEAEKLIVDSS 2053
>UniRef50_Q9CH00 Cluster: Ribonuclease R 1; n=46;
Lactobacillales|Rep: Ribonuclease R 1 - Lactococcus
lactis subsp. lactis (Streptococcus lactis)
Length = 817
Score = 103 bits (246), Expect = 1e-20
Identities = 86/308 (27%), Positives = 144/308 (46%), Gaps = 22/308 (7%)
Query: 49 LEEETVLLDAAKPVDNDDEITPTGKVVGIIRRKWRQYCGILMP----SKFHGATRHLFTP 104
L+ + V ++ K + + G VV IIR Q G + K
Sbjct: 106 LDGDEVFIEIDKNANALKGTSAEGHVVEIIRHDVHQVVGTFVALNDDEKEQTGLIGFVKS 165
Query: 105 AEKRIPRVRIETRQSEILASQRILVALD--SWPRNSRYPL---GHLVRLFVPTCDKDAEN 159
K+IP R+ ++ + +V ++ +P + +P G + + D+ +
Sbjct: 166 RNKKIP-YRVYLENEGLIPENKAIVRVEITHYP-DKEFPQTMQGLVTEIIGQADDQGIDV 223
Query: 160 EVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDAL 219
+L D+ + F + VL+ +PE E RVD R+ ++D D+DDA+
Sbjct: 224 LEVLASMDIV-SEFPKEVLDQAEAVPEEVPENEIVGRVDYRNEITFTIDGADAKDLDDAV 282
Query: 220 HARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSV 279
HA+RL + + YE+GVHIADV+H+V ++ LDKEA R T+VY+ DR + M+P +S
Sbjct: 283 HAKRLENGN----YELGVHIADVSHYVTENSPLDKEAYERGTSVYVTDRVVPMLPERLS- 337
Query: 280 TTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEA-QIAIDDS 338
I ++ RL SCV E+ V++ + +SIIK+ MTY+ Q+ D
Sbjct: 338 ----NGICSLNPRINRLTQSCVMEISPEGRVINYQISQSIIKTTERMTYDAVNQMIAGDE 393
Query: 339 SRKDEIAK 346
+ + AK
Sbjct: 394 AALENYAK 401
>UniRef50_Q2AEI5 Cluster: 3'-5' exoribonuclease, VacB and RNase
II:Ribonuclease R; n=3; Clostridia|Rep: 3'-5'
exoribonuclease, VacB and RNase II:Ribonuclease R -
Halothermothrix orenii H 168
Length = 706
Score = 102 bits (244), Expect = 2e-20
Identities = 78/264 (29%), Positives = 130/264 (49%), Gaps = 17/264 (6%)
Query: 72 GKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRI-PRVRIETRQ-SEILASQRILV 129
G+VV II R Q G L SK+ G P KRI V I + + +Q+++
Sbjct: 123 GEVVKIIERANHQVVGNLEKSKYFG----FVVPDNKRIFYDVFIPKEELNGARQNQKVVA 178
Query: 130 ALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIP 189
+ WP R P G ++++ ++ + E I+ + +P F VL I
Sbjct: 179 EITRWPEKKRNPEGKIIKILGSRGERGVDIEGIIYQLGLPQ-EFDYEVLEEAKSIPLEIS 237
Query: 190 EEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPD 249
+ + + R DLR + + ++D D+DDA+ + + +GVHIADV+H+VK D
Sbjct: 238 KGDLKGRRDLRAMPMVTIDGADAKDLDDAVSIEEVDDNQ----VRLGVHIADVSHYVKED 293
Query: 250 TALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSC-VWEMDENA 308
+ALD+EA R T++YLVDR I M+P +S I ++ ++RL S + E
Sbjct: 294 SALDREALKRGTSIYLVDRVIPMLPERLS-----NGICSLNPNQDRLTMSVFITYQLEPF 348
Query: 309 NVLSTKFHKSIIKSKAAMTYEEAQ 332
++ + S+IK+ +TY+E +
Sbjct: 349 KLMEYEIVPSVIKTNYRLTYDEVR 372
>UniRef50_Q1NL99 Cluster: 3'-5' exoribonuclease, VacB and RNase
II:Ribonuclease R; n=1; delta proteobacterium
MLMS-1|Rep: 3'-5' exoribonuclease, VacB and RNase
II:Ribonuclease R - delta proteobacterium MLMS-1
Length = 782
Score = 101 bits (243), Expect = 2e-20
Identities = 79/276 (28%), Positives = 135/276 (48%), Gaps = 19/276 (6%)
Query: 72 GKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIP-RVRIETRQSEILASQRILVA 130
G+V+ ++ R GI + GAT L TP ++R+P +V + QS + +V
Sbjct: 197 GRVLRVLERGITSLVGIYVS----GATSGLVTPEDERLPFKVVVRRPQSGGARNGEAVVV 252
Query: 131 LDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPE 190
S + P G +V + + E+ + H +PH RF+ A+L + I
Sbjct: 253 EISRFKEQGNPEGRIVEVLGDPAAAPVQIEIAIRSHQLPH-RFAPALLAEVEAYSDKI-- 309
Query: 191 EERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDT 250
E + R+DLR++ ++D D DDA+ L GL Y V IADV+H+V+P +
Sbjct: 310 EPQASRLDLREIPHVTIDSESARDYDDAVAVEPLAKG-GLRLY---VSIADVSHYVQPGS 365
Query: 251 ALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANV 310
ALD EA +R T+VY R + M+P +S + + ++R S + + D
Sbjct: 366 ALDDEAYARGTSVYFPGRVVPMLPERLSND-----LCSLVPDQDRYTMSAIIDFDGKGQR 420
Query: 311 LSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAK 346
S +F KS+I+S+ +TY + + ++D R+ E+ +
Sbjct: 421 KSARFGKSLIRSRHRLTYTKVKAMLED--REPELCR 454
>UniRef50_A6SZV8 Cluster: Exoribonuclease RNAse R; n=20;
Burkholderiales|Rep: Exoribonuclease RNAse R -
Janthinobacterium sp. (strain Marseille) (Minibacterium
massiliensis)
Length = 816
Score = 101 bits (243), Expect = 2e-20
Identities = 78/275 (28%), Positives = 131/275 (47%), Gaps = 16/275 (5%)
Query: 59 AKPVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPR-VRIETR 117
A+ + D P G +V ++ R G L+ +G + P +KRI + + +
Sbjct: 115 ARIIGTDRRGRPEGTIVEVVARANSHVIGRLLNE--NGVW--VVAPEDKRIGQDIMLAGS 170
Query: 118 QSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAV 177
+ Q + V L P P+G +V + D E E+ + ++ VPH FSEA
Sbjct: 171 PGKAKTGQVVSVELTEQPSRFSQPVGKIVEVLGDIDDPGMEIEIAVRKYGVPH-EFSEAA 229
Query: 178 LNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHAR--RLGSSDGLATYEV 235
+ + RVDLRDV + ++D D DDA++ ++G +DG + +
Sbjct: 230 KKAAAKLPNEVRAVDLHDRVDLRDVPLVTIDGEDARDFDDAVYCEPCKIGRADG---FRL 286
Query: 236 GVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEER 295
V IADV+++VKP+ ALD +A RST+VY R I M+P +S + ++ G +R
Sbjct: 287 IVAIADVSNYVKPNEALDVDALERSTSVYFPRRVIPMLPEKLS-----NGLCSLNPGVDR 341
Query: 296 LAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEE 330
L C + + + +F+ ++I S A +TY E
Sbjct: 342 LTLVCDAVITAKGEIKAYQFYPAVIHSAARLTYTE 376
>UniRef50_A5EVE2 Cluster: Ribonuclease R; n=1; Dichelobacter nodosus
VCS1703A|Rep: Ribonuclease R - Dichelobacter nodosus
(strain VCS1703A)
Length = 752
Score = 101 bits (241), Expect = 4e-20
Identities = 60/213 (28%), Positives = 116/213 (54%), Gaps = 11/213 (5%)
Query: 120 EILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLN 179
+ +A+Q +L + ++P + +G +V++ E + + +++P+ FS+AV
Sbjct: 194 DAVANQIVLAEITAYPSKHQQAIGTIVKVLGDEMAAGLEVAIAIENYNIPN-HFSDAVRA 252
Query: 180 CLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHI 239
+ + E + R+DLR + + ++D D DDAL+A + G + Y + V I
Sbjct: 253 QIEKMPDALQEADYVDRLDLRYLPMVTIDGISARDFDDALYAEKRGEN-----YRLFVAI 307
Query: 240 ADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFS 299
ADV+++VKPD+ LD+EA +R T+VY DR + M+P +S + ++ +RL
Sbjct: 308 ADVSYYVKPDSPLDEEAYARGTSVYFPDRVVPMLPEKLS-----NGLCSLNPHVDRLCLV 362
Query: 300 CVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQ 332
C + + + ++KFH+++I+S A +TYE +
Sbjct: 363 CELTITPSGQIKNSKFHQAVIQSHARLTYETVE 395
>UniRef50_Q8IRJ7 Cluster: CG16940-PC, isoform C; n=4;
Sophophora|Rep: CG16940-PC, isoform C - Drosophila
melanogaster (Fruit fly)
Length = 1044
Score = 99.1 bits (236), Expect = 2e-19
Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 12/156 (7%)
Query: 188 IPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVK 247
I +E+ ++R DLR +C+ ++DP D+DDA+ +LG ++ YE+GVHI+DV+HF+
Sbjct: 552 ISQEDLRQRKDLRKMCIFTIDPMTARDLDDAVSIEKLGDNE----YEIGVHISDVSHFLI 607
Query: 248 PDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDEN 307
D LD RST++YL + I M+P ++ + + G+++ AFS W M+
Sbjct: 608 EDNELDNIVKERSTSIYLANEVIHMLPQSLCMR------CSLLPGQDKFAFSVFWRMNGK 661
Query: 308 ANVLSTK--FHKSIIKSKAAMTYEEAQIAIDDSSRK 341
+L K F +++I S + YE AQ ID+ + +
Sbjct: 662 GVMLQKKPEFCRTVINSCSQFAYEHAQKIIDNPNER 697
>UniRef50_O67834 Cluster: Ribonuclease R; n=2; Aquifex aeolicus|Rep:
Ribonuclease R - Aquifex aeolicus
Length = 705
Score = 97.9 bits (233), Expect = 4e-19
Identities = 63/205 (30%), Positives = 112/205 (54%), Gaps = 10/205 (4%)
Query: 127 ILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDW 186
+++ + +P G ++ + +K +VI+ ++++P + + E V+ +
Sbjct: 172 VVLKITQFPTKKSPARGKVIEVLGNPKEKFIAIDVIIRKYNLPTS-YPEKVIKEVEAIPE 230
Query: 187 TIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFV 246
IPEEE ++R DLR+ ++DP D DDA+ A L + +G Y++ VHIADV+++V
Sbjct: 231 EIPEEEIKRRRDLREQLCFTIDPEKAGDFDDAV-AIEL-TPEGY--YKLYVHIADVSYYV 286
Query: 247 KPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDE 306
+ T DKEA R T Y DR + M+P +S + + E++LAF+ DE
Sbjct: 287 REGTETDKEAYKRGFTYYFPDRALHMLPEKLSAK-----LCSLRPNEDKLAFTVEMVFDE 341
Query: 307 NANVLSTKFHKSIIKSKAAMTYEEA 331
+ N+ + ++S+I+SKA +TY EA
Sbjct: 342 SGNLKAYDIYESVIRSKARLTYNEA 366
>UniRef50_Q02146 Cluster: Ribonuclease R 2; n=3; Lactococcus
lactis|Rep: Ribonuclease R 2 - Lactococcus lactis subsp.
lactis (Streptococcus lactis)
Length = 665
Score = 97.5 bits (232), Expect = 5e-19
Identities = 50/141 (35%), Positives = 85/141 (60%), Gaps = 9/141 (6%)
Query: 188 IPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVK 247
+ + + Q R D R+ ++D D+DDA+H ++L + +E+GVHIADV+H+V
Sbjct: 194 LTDSDLQDREDYRNEITYTIDGDDSKDLDDAIHVKKLSNWH----FELGVHIADVSHYVT 249
Query: 248 PDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDEN 307
++LD+EA SR+T+VY+ DR + M+P +S + ++ +ERL SC+ E+D+
Sbjct: 250 EGSSLDEEAYSRATSVYVTDRVVPMLPVKLSNN-----LCSLNEAQERLTMSCLMEIDDK 304
Query: 308 ANVLSTKFHKSIIKSKAAMTY 328
++S K S+IK+ MTY
Sbjct: 305 GKIVSYKISPSVIKTTYRMTY 325
>UniRef50_UPI0000E4A47E Cluster: PREDICTED: similar to CG9425-PB,
partial; n=4; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to CG9425-PB, partial -
Strongylocentrotus purpuratus
Length = 3748
Score = 97.1 bits (231), Expect = 7e-19
Identities = 64/205 (31%), Positives = 112/205 (54%), Gaps = 16/205 (7%)
Query: 134 WPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPN---DWTIPE 190
W + YPLG ++ P + ++ L H+V +F ++V L N W IP+
Sbjct: 2458 WYPKTPYPLGVVIEELEPGIEPRQGLHILKLIHNVKD-KFKDSVNAYLRENFPAGWAIPK 2516
Query: 191 EERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDT 250
+ +KRVDLR++ + ++DPPG D+DDA+ + DG + VG+HIADV++FV +
Sbjct: 2517 ADLEKRVDLRNMKIFTIDPPGSEDLDDAVSVEPI---DG-DRFRVGIHIADVSYFVPKGS 2572
Query: 251 ALDKEAASRSTTVY--LVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENA 308
LD+EA RST+ Y ++ I M+P +S + + ++RLA S + ++ N
Sbjct: 2573 DLDEEARIRSTSFYPSFHEKPIHMLPRKLSTD-----LCSLLPNQDRLALSLLVVVNSNG 2627
Query: 309 NVL-STKFHKSIIKSKAAMTYEEAQ 332
+ + H++II+S ++Y +A+
Sbjct: 2628 ILAEAPNMHRTIIRSCHKLSYHQAE 2652
>UniRef50_Q4UGX2 Cluster: Possible ribonuclease ii family protein;
n=2; Theileria|Rep: Possible ribonuclease ii family
protein - Theileria annulata
Length = 1062
Score = 97.1 bits (231), Expect = 7e-19
Identities = 68/213 (31%), Positives = 106/213 (49%), Gaps = 19/213 (8%)
Query: 134 WPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEER 193
W ++ P G ++R+ TCD D+E E +L H + FSEAVL L + +
Sbjct: 333 WKKSELEPKGDIIRVIGETCDPDSEMEGTMLFHGLDPKGFSEAVLANLNELIQEGNKTKW 392
Query: 194 QKRVDLRDVCVCSVDPPGCTDIDDAL-----HARRLGSSDGLATYEVGVHIADVTHFVKP 248
R D+ + V S+DP D+DDAL A SS+G Y +GVH+ADV+HFVK
Sbjct: 393 DNRKDMNHLFVISIDPQDAKDLDDALSIEFCQANPNDSSNGGIIYTIGVHVADVSHFVKE 452
Query: 249 DTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENA 308
++ +D +A +R+T+VYL M+P +S + + +E+L FS ++ E+
Sbjct: 453 NSLVDLDARTRATSVYLEHLVYPMLPQQLSED-----LCSLLPKKEKLCFSVFVDVSESG 507
Query: 309 N---------VLSTKFHKSIIKSKAAMTYEEAQ 332
+ F S I SK +TY+ A+
Sbjct: 508 EGEKVGNDLYIKDVNFVLSTITSKNRLTYDNAK 540
>UniRef50_Q74D34 Cluster: Ribonuclease R, putative; n=7;
Desulfuromonadales|Rep: Ribonuclease R, putative -
Geobacter sulfurreducens
Length = 763
Score = 96.7 bits (230), Expect = 9e-19
Identities = 65/215 (30%), Positives = 104/215 (48%), Gaps = 10/215 (4%)
Query: 123 ASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLP 182
+ Q ++ L +WP + G +V + D + E I+ +HD+P+ F VL
Sbjct: 171 SGQVVVAELTAWPTERKKAEGRIVEVLGSPDDPEVEVLTIIRKHDLPY-EFPVDVLTEAR 229
Query: 183 PNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADV 242
+ + KRVDLR+ ++D D DDA+ +R D + V IADV
Sbjct: 230 STPQEVRRGDVAKRVDLRERLTVTIDGETARDFDDAVSVQREKGGD----IRLWVSIADV 285
Query: 243 THFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVW 302
+H+VKP +ALD+EA R T+VY DR I M+P +S I ++ ERL +
Sbjct: 286 SHYVKPGSALDREAYLRGTSVYFPDRCIPMLPEELS-----NGICSLNPQVERLTLTAEM 340
Query: 303 EMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDD 337
+ + S+ F+ S+I+S A +TY + + D
Sbjct: 341 LFTRSGAIKSSSFYPSVIRSAARLTYTTVRKVLVD 375
>UniRef50_Q04E22 Cluster: Exoribonuclease R; n=2; Oenococcus
oeni|Rep: Exoribonuclease R - Oenococcus oeni (strain
BAA-331 / PSU-1)
Length = 726
Score = 95.9 bits (228), Expect = 2e-18
Identities = 57/154 (37%), Positives = 84/154 (54%), Gaps = 9/154 (5%)
Query: 183 PNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADV 242
P + E + R D RD + ++D DIDDA+ +L + + Y +GVHIADV
Sbjct: 194 PQTIDVKAAEAEGRPDFRDQPLITIDGADTKDIDDAVVVWKLPNGN----YHLGVHIADV 249
Query: 243 THFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVW 302
+++V T+LD EA R T+VYL DR I M+P T + I ++ E+RLA SC
Sbjct: 250 SNYVPLKTSLDAEAYKRGTSVYLTDRVIPMLP-----TEISNGIASLNPNEDRLAMSCEM 304
Query: 303 EMDENANVLSTKFHKSIIKSKAAMTYEEAQIAID 336
E+++ V+ K SII+S A MTY+ +D
Sbjct: 305 EINQEGQVVKHKIQPSIIRSHARMTYDSINKILD 338
>UniRef50_Q7QUJ8 Cluster: GLP_436_41516_39297; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_436_41516_39297 - Giardia lamblia
ATCC 50803
Length = 739
Score = 95.9 bits (228), Expect = 2e-18
Identities = 56/143 (39%), Positives = 86/143 (60%), Gaps = 13/143 (9%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R++L + SVDPP C DIDDALH + LG + T+E+GVHIADV+ +V+P++A+D E
Sbjct: 176 RLNLTNEYTISVDPPSCKDIDDALHVKTLGPT----TFEIGVHIADVSFYVRPESAIDLE 231
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMD---ENANVLS 312
A R T+VY DRRIDM+P ++ I + G +RL+ S + E++ E A V
Sbjct: 232 ARKRGTSVYFPDRRIDMLPAILTED-----ICSLRSGVDRLSMSVLIELELYREEAGVED 286
Query: 313 TKFHKSIIKSKAAMTYEEAQIAI 335
+ + K A ++ EE ++ +
Sbjct: 287 LELDMEMSK-VAGLSPEERKLRL 308
Score = 46.0 bits (104), Expect = 0.002
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 95 HGATRHLFTPAEKRIPRVRIETRQS-EILASQRILVALDSWPRNSRYPLGHLVRLFVPTC 153
H + P + +P I + S + +R+L ++SW R P + +
Sbjct: 35 HTEKTAMLRPFRRNLPDFFIRSLSSIDHYIGKRVLFIIESWGSEERSPTARVSSILGDVG 94
Query: 154 DKDAENEVILLEHDVPHARFSE 175
D+D E +V+L E+D+PHA E
Sbjct: 95 DRDVEADVVLFEYDIPHANLQE 116
>UniRef50_P54084 Cluster: Ribonuclease R; n=33;
Gammaproteobacteria|Rep: Ribonuclease R - Thiobacillus
ferrooxidans (Acidithiobacillus ferrooxidans)
Length = 439
Score = 95.5 bits (227), Expect = 2e-18
Identities = 71/251 (28%), Positives = 120/251 (47%), Gaps = 16/251 (6%)
Query: 100 HLFTPAEKRIPR----VRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDK 155
H P ++RIP+ V E + Q +++ + +P P GH+V +
Sbjct: 172 HYVVPEDRRIPQEFAVVEGEGEGLTPVHGQIVILEITQYPDGRNMPQGHVVEILGEHMAP 231
Query: 156 DAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDI 215
E E+ + + +PH ++ + VL + T+PE + R DLRD+ + ++D D
Sbjct: 232 GMEVEIAVRNYGLPH-QWPDEVLAEIKQFSETVPETMKAGRRDLRDLPLVTIDGADAKDF 290
Query: 216 DDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPG 275
DDA++A + + + + V IADV +V PD+ALD+EA +R +VY R I M+P
Sbjct: 291 DDAVYAEVIENG-----FRLTVAIADVATYVCPDSALDREAVTRGNSVYFPRRVIPMLPE 345
Query: 276 NVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEE-AQIA 334
+S + ++ +RL C EMD +F + II S+ TY+E A I
Sbjct: 346 ILS-----NGLCSLNPHVDRLCMFCEMEMDAAGRSTGFRFDRGIIGSQRRFTYDEVAAIL 400
Query: 335 IDDSSRKDEIA 345
D+ + + A
Sbjct: 401 AGDAELRAQDA 411
>UniRef50_A6NVY9 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 710
Score = 94.7 bits (225), Expect = 4e-18
Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 11/228 (4%)
Query: 104 PAEKRIPR-VRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVI 162
P ++P ++I + + ++I V + + P+G L F P ++++ I
Sbjct: 97 PDSDKLPGPIKISGKAKGVRIGEKIAVEMLGYGTAKTPPMGALRETFGPAGNRESSTAAI 156
Query: 163 LLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHAR 222
L +++ F AVL+ + ++ R DLR+ + ++D D+DDA+
Sbjct: 157 LYHYEID-PEFPPAVLDAAARAPREVEKDALTGRTDLRNRIIITIDGASSKDLDDAVSLE 215
Query: 223 RLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTV 282
R D + +GVHIADV+H+V+ + LD EA R T+VY DR I M+P +S
Sbjct: 216 R----DEQGRWVLGVHIADVSHYVQEKSPLDLEAWERGTSVYFADRVIPMLPVELS---- 267
Query: 283 KYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEE 330
I ++ G +RL SC + + KS+I+S MTYE+
Sbjct: 268 -NGICSLNPGVDRLTISCFMTLAADGREEDHTICKSVIRSTERMTYED 314
>UniRef50_Q4A6A7 Cluster: VACB-like ribonuclease II; n=2; Mycoplasma
synoviae 53|Rep: VACB-like ribonuclease II - Mycoplasma
synoviae (strain 53)
Length = 735
Score = 93.5 bits (222), Expect = 9e-18
Identities = 86/340 (25%), Positives = 157/340 (46%), Gaps = 28/340 (8%)
Query: 4 LLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKPVD 63
LL+ GI + A F E K S V K +D + L + V+ K
Sbjct: 63 LLRKQSGIIKVASKKQFAFLEFENEAQEKESVFV---KFQDLNSALNNDEVIASIYK--- 116
Query: 64 NDDEITPTGKVVG----IIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIE--TR 117
+ +E PT +++ I++R ++ G + K F PA+ +V+ E
Sbjct: 117 DHNEKNPTRQLLAVVDEIVQRNNQKIIGFIKKDK----NTIFFAPADGCFDKVKFELLNL 172
Query: 118 QSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAV 177
S++ + +L + + +N L + ++ T D + + L ++ +E +
Sbjct: 173 SSKVKINDCVLCEIKKYDKNL-VSL-EIKKVITNTSDPNVFVKAYLESTNIDLEFSAETL 230
Query: 178 LNC-LPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVG 236
L P + + +E+ +R +L + ++D D DDA++ ++L + + L +
Sbjct: 231 AESKLIPQEVDLNIKEKFQRKNLTSELIVTIDGESTKDFDDAINVKKLENGNFL----LS 286
Query: 237 VHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERL 296
VHIADV H+VK T LD EA R T++Y+ + I M+P +S I ++ +R
Sbjct: 287 VHIADVAHYVKEKTNLDSEALKRGTSIYIANGVIPMLPSELS-----NGICSINPNVDRF 341
Query: 297 AFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAID 336
A SC E+D++ N ++ K +KS+I SK +TY++ Q D
Sbjct: 342 ALSCDIEIDQHGNNVNYKIYKSVINSKFRLTYKQVQAFFD 381
>UniRef50_A6VV57 Cluster: Ribonuclease R; n=1; Marinomonas sp.
MWYL1|Rep: Ribonuclease R - Marinomonas sp. MWYL1
Length = 880
Score = 93.5 bits (222), Expect = 9e-18
Identities = 76/276 (27%), Positives = 127/276 (46%), Gaps = 19/276 (6%)
Query: 72 GKVVGIIRRKWRQYCGILMPSKFHGATRHLF-TPAEKRIPRVRIETRQSEILAS--QRIL 128
G VV +I RK Q G +++ +R F TP RI + + T S + Q +L
Sbjct: 164 GVVVEVIERKHSQLVG-----RYYEESRTAFVTPENPRIAQDILITTDSGLTPKHGQYVL 218
Query: 129 VALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTI 188
+ S+ + G + ++ E EV + +++P+ + AV + +
Sbjct: 219 AEIVSYAERGKPAQGLVKKILGDFMAPGVEIEVAMHRYEIPN-EWPAAVEKQIKNFSTEV 277
Query: 189 PEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKP 248
EE++ RVDLRD ++D D DDA++ + +++ V IADV+H+VK
Sbjct: 278 AEEDKAHRVDLRDTPFVTIDGEDARDFDDAVYCEKTPGG-----WKLFVAIADVSHYVKK 332
Query: 249 DTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENA 308
DTALD+EA R +VY R I M+P + + ++ +RLA +
Sbjct: 333 DTALDEEAIVRGNSVYFPGRVIPMLP-----EVLSNGLCSLNPDVDRLAMVAEVSLTTKG 387
Query: 309 NVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEI 344
+ KF++ II+S A +TY + IDD + I
Sbjct: 388 KMRGFKFYEGIIRSHARLTYSKVAKMIDDEPEEQGI 423
>UniRef50_A3EPY9 Cluster: Exoribonuclease R; n=1; Leptospirillum sp.
Group II UBA|Rep: Exoribonuclease R - Leptospirillum sp.
Group II UBA
Length = 744
Score = 93.5 bits (222), Expect = 9e-18
Identities = 73/259 (28%), Positives = 119/259 (45%), Gaps = 16/259 (6%)
Query: 72 GKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEILASQRILVAL 131
G+VV II R G+L K G + +P + +IP + + L L
Sbjct: 132 GQVVEIISRSRSSVVGVLHELK--GG--YFLSPRDPKIPHEFLVVDNGAEKLQEGELAVL 187
Query: 132 D--SWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIP 189
D +P P G + R D + ++++ H + + F + V +
Sbjct: 188 DILRYPEPGHIPEGKISRFLGDPSDPSVDTDLVIATHHLSIS-FPDRVEAEAKRMAKEVA 246
Query: 190 EEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPD 249
E + RVDLR + + ++D D DDAL + + DG T+++G+HIADV +V P
Sbjct: 247 VEPSENRVDLRHLEIMTIDGDRARDFDDALSV--VENPDG--TFQIGIHIADVGAYVLPG 302
Query: 250 TALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENAN 309
+ LDKEA R T+VY DR + M P + +L ++ E+RLA + + M
Sbjct: 303 SELDKEAFRRGTSVYFPDRVVPMFP-----EVLSNGVLSLNPDEDRLARTVMVRMSPAGQ 357
Query: 310 VLSTKFHKSIIKSKAAMTY 328
VL + +S+I+S+ TY
Sbjct: 358 VLESSIFRSVIRSRLRATY 376
>UniRef50_Q1GTS6 Cluster: Ribonuclease R; n=8; Sphingomonadales|Rep:
Ribonuclease R - Sphingopyxis alaskensis (Sphingomonas
alaskensis)
Length = 766
Score = 93.1 bits (221), Expect = 1e-17
Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 8/176 (4%)
Query: 161 VILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALH 220
+ + +H++PH E + + + R+ DLRD+ + ++DP D DDA+
Sbjct: 222 IAIAKHEIPHIFGDEVIDEAERAAKLPLTTDGRE---DLRDLPILAIDPADARDHDDAVW 278
Query: 221 ARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVT 280
A + V IADV+++V+PD ALD+EA R +VY DR + M+P +S
Sbjct: 279 AVPDDDPGNKGGFRAIVAIADVSYYVRPDGALDREARRRGNSVYFPDRVVPMLPETLSAG 338
Query: 281 TVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAID 336
+ + G++R A +C +D++ V S +F +++++ +A + YE AQ A D
Sbjct: 339 -----VCSLKAGQDRAAMACHLVIDKHGKVTSWRFTRALVRLRANIAYERAQTAYD 389
>UniRef50_P40611 Cluster: Ribonuclease R; n=137; Proteobacteria|Rep:
Ribonuclease R - Vibrio parahaemolyticus
Length = 835
Score = 92.3 bits (219), Expect = 2e-17
Identities = 81/349 (23%), Positives = 155/349 (44%), Gaps = 23/349 (6%)
Query: 46 ENILEEETVLLDAAKPVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPA 105
+NI+ + VL+ +P DN G++V ++ + Q G +G + P
Sbjct: 123 KNIIHGDFVLV---QPTDNSKRGRREGRLVRVLEERNSQIVGRFFLE--YGYS--YVVPD 175
Query: 106 EKRIPRVRIETRQSEILASQRILVALDSWPRNSRYP--LGHLVRLFVPTCDKDAENEVIL 163
+ RI + + + + A +V ++ R SR +G +V + E ++ +
Sbjct: 176 DSRISQDILIPNEHKAGARMGNVVVIEITDRGSRSRGMMGKVVEVLGENMAPGMETQIAI 235
Query: 164 LEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARR 223
H +P+ + EAV + +PEE + RVDLR++ + ++D D DDA+ +
Sbjct: 236 RTHQIPY-EWPEAVEKQIVNLGEEVPEEAKVGRVDLRELPLVTIDGEDARDFDDAVFCEK 294
Query: 224 LGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVK 283
DG + + V IADV+++V+PD+ALDKEA +R +VY + + M+P +
Sbjct: 295 --KKDG--GWRLWVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLP-----EVLS 345
Query: 284 YYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDS----S 339
+ ++ +RL C + E+ + S K +++++ S A +TY + ++
Sbjct: 346 NGLCSLNPQVDRLCMVCEMTISESGKLSSYKHYEAVMNSHARLTYSKVSAILEGDEELRE 405
Query: 340 RKDEIAKSXXXXXXXXXXXXXXXXDSGALLLASPEIRFQFFKKLNIQSI 388
R + GA+ + E +F F + I+SI
Sbjct: 406 RYQPLVSHLEELHAMYKVLKEARDQRGAIEFETVETKFIFNAERKIESI 454
>UniRef50_Q11IM6 Cluster: Ribonuclease R; n=2;
Alphaproteobacteria|Rep: Ribonuclease R - Mesorhizobium
sp. (strain BNC1)
Length = 765
Score = 91.1 bits (216), Expect = 5e-17
Identities = 73/268 (27%), Positives = 125/268 (46%), Gaps = 17/268 (6%)
Query: 71 TGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEILASQRILVA 130
TG+VV + ++ R G+ G R P E+R P + ++ S A LV
Sbjct: 151 TGRVVKLFEKRRRAVLGVFREMP-DGTLR--IEPVERRQPELVVD-EASRKGAKSGDLVE 206
Query: 131 LDSWPRNSRY--PLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTI 188
++ + RY P ++ + + A + + + H++PH F E+V+ ++
Sbjct: 207 VEPLSQG-RYGLPRARVLEVVGSITTEKAVSMIAIHAHEIPHI-FPESVVK----EAESV 260
Query: 189 PEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKP 248
+ R D R + + ++DP D DDA++A V V IADV +V+P
Sbjct: 261 KPATLEGREDWRKLPLVTIDPADAKDHDDAVYAEADTDEKNPGGVVVTVAIADVACYVRP 320
Query: 249 DTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENA 308
D+ALD+EA +R +VY DR + M+P +S + + GE R A +
Sbjct: 321 DSALDREALNRGNSVYFPDRVVPMLPERISND-----LCSLREGEARPALAVRMRFTSGG 375
Query: 309 NVLSTKFHKSIIKSKAAMTYEEAQIAID 336
+ FH+ +++S A ++YE+AQ AID
Sbjct: 376 RKIGHSFHRVMMRSAARLSYEQAQAAID 403
>UniRef50_A6QWR5 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 1344
Score = 90.6 bits (215), Expect = 6e-17
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 15/169 (8%)
Query: 102 FTPAEKRIPRVRIETRQSEI--------LASQRILVALDSWPRNSRYPLGHLVRLFVPTC 153
F P +KR+P + I T Q+ A+ + + WP S +P G LV
Sbjct: 653 FKPTDKRVPLIAIPTEQAPRDFVEKHAEYANNIFVACIKRWPITSLHPFGTLVEQLGAMG 712
Query: 154 DKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEER---QKRVDLRDVCVCSVDPP 210
+ E + +L +++ FS+AVL + W++ +E + R D RD ++DP
Sbjct: 713 NLKVETDALLRDNNFASDEFSDAVLKNVGFEKWSVKDEGEALLENRRDFRDETTFTIDPN 772
Query: 211 GCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASR 259
G ++DDA+H + L DG EVG+H+ADV HF+K ++ +D+EA R
Sbjct: 773 GYKELDDAIHVKSL--PDGKV--EVGIHVADVAHFIKSNSLVDREAKKR 817
>UniRef50_Q9PR88 Cluster: Ribonuclease R; n=1; Ureaplasma
parvum|Rep: Ribonuclease R - Ureaplasma parvum
(Ureaplasma urealyticum biotype 1)
Length = 721
Score = 90.6 bits (215), Expect = 6e-17
Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 9/168 (5%)
Query: 173 FSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLAT 232
F V++ ++ + E + + R + D + S+DP G DIDDA++ ++L
Sbjct: 226 FDPQVVDLASKLEFYVDEHQNKIRRSIIDREIISIDPVGSKDIDDAVYVKKLNDQ----R 281
Query: 233 YEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCG 292
Y +G+ IADV+ +V+P+T LD +A R T+ YLVDR I M+P N+S I ++ G
Sbjct: 282 YFLGISIADVSFYVQPNTILDADAFKRGTSTYLVDRVIPMLPHNISNN-----ICSLNEG 336
Query: 293 EERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSR 340
E R+ +C +D++ + + +I+K+ M+Y+E + SR
Sbjct: 337 EFRMCITCDMVIDKDGKICWKDVYPAIMKNYRQMSYDEVNDFYEGKSR 384
>UniRef50_A4YWH1 Cluster: Ribonuclease R; n=31;
Alphaproteobacteria|Rep: Ribonuclease R - Bradyrhizobium
sp. (strain ORS278)
Length = 799
Score = 89.4 bits (212), Expect = 1e-16
Identities = 70/279 (25%), Positives = 130/279 (46%), Gaps = 15/279 (5%)
Query: 60 KPVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQS 119
+P+++ D I G+V+ ++ + + GI S +G R + P +K+ +
Sbjct: 132 EPINDADGIAYRGRVLKVLDQARNRVLGIFK-SNPNGGGRLI--PVDKKQAGRELSIAPG 188
Query: 120 EIL-ASQRILVALDSWP-RNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAV 177
+ A L+++D R P G + + + A + + + H++P + A+
Sbjct: 189 DTRDAKDGDLISVDLLRGRGYGLPAGRVKERYGSVATEKAISLIAIHAHEIPMDFSAAAI 248
Query: 178 LNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGV 237
T+ E D RD+ + ++DPP D DDA+HA + + + V
Sbjct: 249 AEAEAAQPATLKGRE-----DWRDLPLVTIDPPDAKDHDDAVHAEPDPDPNNAGGFILHV 303
Query: 238 HIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLA 297
IADV ++V+P +ALD++A R +VY DR + M+P +S + + GE R A
Sbjct: 304 AIADVAYYVRPGSALDRDALIRGNSVYFPDRVVPMLPERISNN-----LCSLVPGEARGA 358
Query: 298 FSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAID 336
+ M + S FH+ +++S A ++Y +AQ A+D
Sbjct: 359 LAVRMVMGADGRKRSHSFHRVLMRSAAKLSYAQAQAAVD 397
>UniRef50_O94525 Cluster: Ribonuclease II (RNB) family; n=1;
Schizosaccharomyces pombe|Rep: Ribonuclease II (RNB)
family - Schizosaccharomyces pombe (Fission yeast)
Length = 1157
Score = 89.0 bits (211), Expect = 2e-16
Identities = 73/240 (30%), Positives = 112/240 (46%), Gaps = 23/240 (9%)
Query: 102 FTPAEKRIPRVRIETRQ--------SEILASQRILVALDSWPRNSRYPLGHLVRLFVPTC 153
F P++KRIP + I + Q ++ + L + WP S +P G L
Sbjct: 503 FKPSDKRIPLIAISSDQVPPTFFTNNDDFKDKVFLAGIKRWPTTSLHPFGTLYESIGTIG 562
Query: 154 DKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCT 213
D E + IL + F E++ +C+ IP EE QKR +LRD + G
Sbjct: 563 DPKVEYKAILHDFSCHTYDFPESLSHCVKRLPTPIPAEELQKRYNLRDKLTFMI---GTR 619
Query: 214 DIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMV 273
D ALH GS DG+ T +G+H+ADV ++VK D LD EAA+R + V L+ + +
Sbjct: 620 DY--ALHIDT-GSIDGVIT--LGIHVADVAYYVKQDMPLDDEAANRVSEVQLLQGSVPFL 674
Query: 274 PGNVSVTTVKYYILQVSCGEERLAFSCVWEMD-ENANVLSTKFHKSIIKSKAAMTYEEAQ 332
P VS + + G + L S V ++D ++ VL S+I + ++ E AQ
Sbjct: 675 PKKVSEE------ISLIEGHDCLTISIVVQLDLKSGAVLQCSLGPSVIHPSSFISLESAQ 728
>UniRef50_Q6F7U9 Cluster: Exoribonuclease R; n=5; Moraxellaceae|Rep:
Exoribonuclease R - Acinetobacter sp. (strain ADP1)
Length = 817
Score = 87.8 bits (208), Expect = 4e-16
Identities = 62/227 (27%), Positives = 112/227 (49%), Gaps = 13/227 (5%)
Query: 105 AEKRIPRVRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILL 164
A + IP + ++ + + VA+D +P + GH+++ D + +L
Sbjct: 185 AHQPIPLEKELIEHAQAKVGENLRVAIDDYPTREEFSTGHIIQSMSDKADTEIIIPQTIL 244
Query: 165 EHDVPHARFSEAVLNCLPPNDWTIP-EEERQKRVDLRDVCVCSVDPPGCTDIDDALHARR 223
E +P+ F E V+ + P +++ + R+DLRD+ + ++D D DDA++A +
Sbjct: 245 EFGLPY-EFPEEVVK--DAESFKEPSKKDIEGRIDLRDLPLVTIDGEDARDFDDAVYAEK 301
Query: 224 LGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVK 283
S G Y V V IADV+H+V+ LD EA R T+VY + M+P +S
Sbjct: 302 R-SGGG---YRVVVAIADVSHYVRLGKPLDDEAQERGTSVYFPHFVLPMLPEALS----- 352
Query: 284 YYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEE 330
+ ++ +RL C ++ V+S +F+ S++ SKA +TY +
Sbjct: 353 NGLCSLNPHVDRLCMVCDLKLSRAGRVMSYEFYPSVMHSKARLTYTQ 399
>UniRef50_Q9PBZ8 Cluster: VacB protein; n=16; Xanthomonadaceae|Rep:
VacB protein - Xylella fastidiosa
Length = 717
Score = 87.0 bits (206), Expect = 7e-16
Identities = 69/268 (25%), Positives = 125/268 (46%), Gaps = 13/268 (4%)
Query: 72 GKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPR-VRIETRQSEILASQRILVA 130
G+ G+I R + L+ F+ P +KR+ R V+I + +++V
Sbjct: 134 GRREGMIARVLERRMSRLVGRFFYELGIAYVEPDDKRLQRNVQIPPEHIGGASEGQLVVC 193
Query: 131 LDSWPRNSRYP-LGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIP 189
P ++R P +G ++ + E + H +PH FS+ VL+ T+
Sbjct: 194 ELVVPPDTRRPAIGRILVVLGEALTPSLVVETAIHGHQLPHV-FSQEVLDAAAAVPLTVE 252
Query: 190 EEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPD 249
RVDLR + + ++D D DDA++ + + V IADV+H+V+P
Sbjct: 253 SGMVGGRVDLRALPLVTIDGEDAKDFDDAVYCE-----SNRWGFRLVVAIADVSHYVRPG 307
Query: 250 TALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENAN 309
T LD+EA +R+T+VY + M+P T+ I + +R+ F C ++D
Sbjct: 308 TPLDEEALTRATSVYFPGFVVPMLP-----ETLSNGICSLKPSVDRMCFVCEMQIDRKGE 362
Query: 310 VLSTKFHKSIIKSKAAMTYEEAQIAIDD 337
V S+ F+++++ S A +TY + A+ +
Sbjct: 363 VKSSSFYEAVMNSHARLTYTQVWKAVGE 390
>UniRef50_A2AS03 Cluster: Novel protein (Possible orthologue of human
peroxisomal proliferator- activated receptor A
interacting complex 285 (PRIC285)); n=11;
Euteleostomi|Rep: Novel protein (Possible orthologue of
human peroxisomal proliferator- activated receptor A
interacting complex 285 (PRIC285)) - Mus musculus (Mouse)
Length = 2970
Score = 86.2 bits (204), Expect = 1e-15
Identities = 70/228 (30%), Positives = 106/228 (46%), Gaps = 14/228 (6%)
Query: 108 RIPRVRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHD 167
++ RVR ET + E +++ V + W YPLG ++ + + ++ LEH
Sbjct: 1479 QVQRVRHETLKPEDRSTRLFWVRIVLWRERFYYPLGIVLEVLPKAITWEQGLYILDLEHG 1538
Query: 168 VP-HARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGS 226
+ H +V L + R D R +VDP G ++DDAL R LG
Sbjct: 1539 LKAHTPDPASVSKALQRYRSEL-NTAAGHREDYRHFLTFTVDPQGACNLDDALSVRDLGP 1597
Query: 227 SDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRR-IDMVPGNVSVTTVKYY 285
YEV VHIADV V D ALD EA + T Y +R + M+P ++
Sbjct: 1598 -----VYEVAVHIADVASLVPKDGALDVEARQQGTVFYAPNREPVLMLPASLCQDA---- 1648
Query: 286 ILQVSCGEERLAFSCVWEMDE-NANVLSTKFHKSIIKSKAAMTYEEAQ 332
L + G++RLA S M++ + S +F SII+S ++YEEA+
Sbjct: 1649 -LSLLPGQDRLAISLFLTMEKGGGQIKSLRFAPSIIRSDRQLSYEEAE 1695
>UniRef50_Q5FLT5 Cluster: Ribonuclease R; n=3; Lactobacillus|Rep:
Ribonuclease R - Lactobacillus acidophilus
Length = 782
Score = 85.4 bits (202), Expect = 2e-15
Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 20/231 (8%)
Query: 107 KRIPRVRIETRQSEILASQ--RILVALDSWPRNSRYP---LGHLVRLFVPTCDKDAENEV 161
K++ + R+ ++ ++ + V++ +P YP G ++ + D +
Sbjct: 170 KKLHKYRVYLSENGLIPQMGDMVKVSIKDYPEED-YPESMTGAVINIIGNKNDPGVDIMS 228
Query: 162 ILLEHDVPHARFSEAV--LNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDAL 219
I+ HDV +A+ N +P + + E +++ RVD+ D ++D D DDA+
Sbjct: 229 IVSAHDVRTEWPEDAMKQANAIPDH---VTEGDKKGRVDITDQPAVTIDGDDSKDFDDAV 285
Query: 220 HARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSV 279
+L + + Y +GVHIADV+H+V +T L+ EA +R + YLVDR I M+P +S
Sbjct: 286 VVWKLPNGN----YHLGVHIADVSHYVTENTPLNDEAFARGNSTYLVDRVIPMLPFRLS- 340
Query: 280 TTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEE 330
I ++ G ERL SC E+ + K + S+++S MTY +
Sbjct: 341 ----NGICSLNEGVERLVLSCDMEITPEGKRVGYKIYPSVMRSHGRMTYNK 387
>UniRef50_Q31FJ1 Cluster: Ribonuclease R; n=1; Thiomicrospira
crunogena XCL-2|Rep: Ribonuclease R - Thiomicrospira
crunogena (strain XCL-2)
Length = 818
Score = 84.6 bits (200), Expect = 4e-15
Identities = 64/270 (23%), Positives = 124/270 (45%), Gaps = 16/270 (5%)
Query: 125 QRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPN 184
Q ++V + P +G ++ + E + + +D+P+ + + +L+ L
Sbjct: 228 QIVMVEVIHQPTKRSSAIGKIIEVVGDYLAPGMEIDSAIHAYDIPN-EWPQELLDQLEAI 286
Query: 185 DWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTH 244
+ +E+++ R DLR + + ++D D DDA+ A+R + + + V IADV+H
Sbjct: 287 PDEVTQEDKEGRKDLRSLPLVTIDGADSKDFDDAVFAKRRKNG-----WRLVVAIADVSH 341
Query: 245 FVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEM 304
+VK T LDKEA R +VY + + M+P +S + ++ +RL C +
Sbjct: 342 YVKEGTPLDKEAYERGNSVYFPQKVVPMLPEKLSND-----LCSLNPNVDRLCMVCDMSI 396
Query: 305 DENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSS---RK--DEIAKSXXXXXXXXXXXX 359
D + + T+F+ +++ SKA +TY++ + D RK ++ +
Sbjct: 397 DNDGKLERTQFYDAVMNSKARLTYDQVHEMLTDKGSEHRKTFKDVVPNVEDLNDLYEILK 456
Query: 360 XXXXDSGALLLASPEIRFQFFKKLNIQSIV 389
+ GAL + E R F + I+ IV
Sbjct: 457 GARSERGALEFDTTETRIVFDEHRKIEKIV 486
>UniRef50_Q0VMF7 Cluster: Ribonuclease R; n=1; Alcanivorax
borkumensis SK2|Rep: Ribonuclease R - Alcanivorax
borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
Length = 828
Score = 84.6 bits (200), Expect = 4e-15
Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 12/236 (5%)
Query: 104 PAEKRIPR-VRIETRQS-EILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEV 161
P +RI + V IE + + + + +P + L L + + E EV
Sbjct: 182 PENRRITKEVLIEDKNGIKPNPGDHVRATITQYPSRDHHVLVRLEEIIATPDEAGMEVEV 241
Query: 162 ILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHA 221
L ++PH + E V +P E + RVDLRD+ + ++D D DDA++
Sbjct: 242 ALRRFEIPHV-WPEGVEAAAEKFGDKVPHEPKAHRVDLRDLPLVTIDDETARDFDDAVYV 300
Query: 222 RRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTT 281
R + + V IADV+H+V+P + LD+EAA R +VY +R I M+P +S
Sbjct: 301 ERRPRGG----WRLIVAIADVSHYVQPGSELDQEAAKRGNSVYFPNRVIPMLPEALS--- 353
Query: 282 VKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDD 337
+ ++ +RL C ++ N + F + +++S+ +TY + I++
Sbjct: 354 --NGLCSLNPHVDRLCLYCDMKISANGRLTRFIFREGVMRSRHRLTYNKVGAIIEE 407
>UniRef50_Q5V0M7 Cluster: Ribonuclease R; n=6; Halobacteriaceae|Rep:
Ribonuclease R - Haloarcula marismortui (Halobacterium
marismortui)
Length = 457
Score = 84.2 bits (199), Expect = 5e-15
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 190 EEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPD 249
E+E +R DLR++ + DP D DDA+ D + + VHIADVTH+V PD
Sbjct: 66 EDEVDERQDLREMTTWTTDPIDAQDFDDAISIEE--REDEIVLW---VHIADVTHYVNPD 120
Query: 250 TALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMD-ENA 308
T + ++A R TVYL + M+P ++ T + + E+RLA + +D EN
Sbjct: 121 TKMWEQAVERGNTVYLPAYTVHMLPPVLAET-----VCSLVPNEDRLAHTVEMHLDKENL 175
Query: 309 NVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEI 344
+KS+I+S A +TY EA+ +D+ +++
Sbjct: 176 GYEEINIYKSVIRSDARLTYTEAERLLDEPETAEDV 211
>UniRef50_Q98QL0 Cluster: Ribonuclease R; n=1; Mycoplasma
pulmonis|Rep: Ribonuclease R - Mycoplasma pulmonis
Length = 725
Score = 84.2 bits (199), Expect = 5e-15
Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 10/169 (5%)
Query: 162 ILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHA 221
I+LE F E VL+ + + E++ Q R DLRD + ++D D DDA++
Sbjct: 202 IVLEKSKTIIDFPEDVLDESALIEDHVIEKDYQNRKDLRDKLIITIDGEDTKDFDDAIYV 261
Query: 222 RRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTT 281
+ + D + + VHIADV H+VK ++A+DKEA R+T++YL I M+P +S
Sbjct: 262 EK--NKDH---FLLSVHIADVAHYVKENSAIDKEALRRATSIYLPHMVIPMLPEKLS--- 313
Query: 282 VKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEE 330
I ++ G +RL S +D N + T+ ++ II SK +TY +
Sbjct: 314 --NGICSLNPGVDRLVMSIDIFIDFQGNTIKTELYEGIINSKHRLTYNQ 360
>UniRef50_A4EAC1 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 711
Score = 83.8 bits (198), Expect = 7e-15
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 9/137 (6%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R DLRD V ++DP D DDA+ R + +G Y +GVHIADV+H+V D +D E
Sbjct: 202 RRDLRDRFVITIDPVDARDFDDAVSLER--TPEG--GYRLGVHIADVSHYVAWDGHIDLE 257
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
A R+T+VYL DR + M+P +S + + E+RLAF+ E+D V
Sbjct: 258 ARHRTTSVYLADRVLPMLPERLSND-----LCSLRPDEDRLAFTVDIELDAQGRVRHYDP 312
Query: 316 HKSIIKSKAAMTYEEAQ 332
+ S+I+S+ M Y+ A+
Sbjct: 313 YPSVIRSRVRMDYDGAE 329
>UniRef50_A1AWH7 Cluster: Ribonuclease R; n=2; sulfur-oxidizing
symbionts|Rep: Ribonuclease R - Ruthia magnifica subsp.
Calyptogena magnifica
Length = 705
Score = 83.8 bits (198), Expect = 7e-15
Identities = 58/224 (25%), Positives = 108/224 (48%), Gaps = 12/224 (5%)
Query: 106 EKRIPR-VRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILL 164
+KRI + I E L Q ++V + P +G +V++ D+ E + L
Sbjct: 161 DKRIKHNISISKINREHLDEQIVIVKITKSPTLKSLAVGEIVQILGSYMDEGVETDSALY 220
Query: 165 EHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRL 224
+ +P FS L + + +++ R+D+ + + ++D D DDA++A+
Sbjct: 221 RNGIP-VDFSPEALIQTDKLPSIVTDSDKKGRIDITKMKLVTIDDEDSRDFDDAVYAQT- 278
Query: 225 GSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKY 284
+S G +++ V IADV+H+VK LDK+A R +VY + M+P +
Sbjct: 279 -TSKG---WKLVVSIADVSHYVKEGLYLDKDATDRGNSVYFPHHVVPMLP-----EVLSN 329
Query: 285 YILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTY 328
+ ++ ERL +C +D + N+L KF+ +++ S A +TY
Sbjct: 330 GLCSINPDVERLCMTCEMNIDTHGNLLDYKFYPAVMLSHARLTY 373
>UniRef50_O13327 Cluster: Protein phosphatase Ssd1 homolog; n=6;
Saccharomycetales|Rep: Protein phosphatase Ssd1 homolog
- Candida albicans (Yeast)
Length = 1262
Score = 83.4 bits (197), Expect = 9e-15
Identities = 63/242 (26%), Positives = 120/242 (49%), Gaps = 25/242 (10%)
Query: 102 FTPAEKRIPRVRIETRQS--------EILASQRILVALDSWPRNSRYPLGHLVRLFVPTC 153
F P +K++P + I T Q+ E A + + ++ WP S +P G LV P
Sbjct: 565 FKPTDKKVPLIAIPTEQAPKDFVENHEKYADRLFVASIKRWPITSLHPFGTLVSNLGPID 624
Query: 154 DKDAENEVILLEHDVPHARFSEAVLN-CLPPNDWTIP----EEERQKRVDLRDVCVCSVD 208
+ E + IL +++ + + + + N + +P E E +R + + + +
Sbjct: 625 SPETEIDSILRDNNFLCDEYPDDDNDDIVSVNAYDLPSIEPEFENTQREEYLNDYIIAFT 684
Query: 209 PPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDR 268
G +D ALH +R+ ++ E+G H+AD+ +F+KP ++LD+++ RS++V+L +
Sbjct: 685 QNG-EFVDHALHVKRISNTK----IELGFHVADIAYFIKPGSSLDRKSKKRSSSVFLPQK 739
Query: 269 RIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMD-ENANVLSTKFHKSIIKSKAAMT 327
+++ P V+ I+ E+ LA S V+E+D N V H+S+I K +T
Sbjct: 740 TVNLFPKQVN------KIVSFKENEKNLAVSVVFEIDTSNFEVEDLYIHESVIIPKQLVT 793
Query: 328 YE 329
Y+
Sbjct: 794 YD 795
>UniRef50_A1K401 Cluster: Exoribonuclease II; n=32; Bacteria|Rep:
Exoribonuclease II - Azoarcus sp. (strain BH72)
Length = 993
Score = 83.0 bits (196), Expect = 1e-14
Identities = 71/280 (25%), Positives = 130/280 (46%), Gaps = 22/280 (7%)
Query: 70 PTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPR-VRIETRQSEILASQRIL 128
P GKVV I+ R + G ++ HG + P +R+ + + + ++ Q +
Sbjct: 125 PEGKVVEILERANSRVVGRVLNE--HGVM--IVVPENRRLAQDILVAPGGKKVQPGQVVT 180
Query: 129 VALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNC--LPPNDW 186
V L P P+G + + D E E+ L +HD+P SEA + LP
Sbjct: 181 VELIEQPTKYAQPIGRVTEVLGNYADPGMEIEIALRKHDLPFEFSSEAKADTRKLPT--- 237
Query: 187 TIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFV 246
+ +++ R D+ + + ++D D DDA++ R G + + V IADV+H+V
Sbjct: 238 AVRKKDWAGREDITALPLVTIDGETAKDFDDAVYCERQGRG-----FRLVVAIADVSHYV 292
Query: 247 KPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDE 306
+ +ALD++A R +VY R I M+P +S + ++ ERL +
Sbjct: 293 EAGSALDRDAYERGNSVYFPRRVIPMLPEKLS-----NGLCSLNPQVERLCMVADMGISM 347
Query: 307 NANVLSTKFHKSIIKSKAAMTYEEAQIAI--DDSSRKDEI 344
+ + +F+ +++ S A +TY + A+ +D++ DEI
Sbjct: 348 TGEIKAYRFYPAVMFSHARLTYTKVAAALYDNDATALDEI 387
>UniRef50_Q28VI9 Cluster: Ribonuclease R; n=27;
Alphaproteobacteria|Rep: Ribonuclease R - Jannaschia sp.
(strain CCS1)
Length = 778
Score = 81.8 bits (193), Expect = 3e-14
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R DLRD+ + ++DP D DDA +A + + V IADV H+V PD+ALD+E
Sbjct: 264 REDLRDLPLITIDPADARDHDDACYAHADEDPGNKGGHVIWVAIADVAHYVTPDSALDRE 323
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
A R + Y DR + M+P +S + + G R + +D + F
Sbjct: 324 ARKRGNSTYFPDRVVPMLPDRLSGD-----LCSLHEGVPRAVIAVRMVIDARGEKIGHTF 378
Query: 316 HKSIIKSKAAMTYEEAQIA 334
H+ ++ S A+++YEEAQ A
Sbjct: 379 HRGLMTSVASLSYEEAQAA 397
>UniRef50_Q7NB22 Cluster: VacB; n=1; Mycoplasma gallisepticum|Rep:
VacB - Mycoplasma gallisepticum
Length = 707
Score = 81.4 bits (192), Expect = 4e-14
Identities = 44/158 (27%), Positives = 87/158 (55%), Gaps = 9/158 (5%)
Query: 173 FSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLAT 232
FS+ ++N + + + +++ R DLRD+ ++DP D+DDA++ +++ +
Sbjct: 234 FSQEIINEAKSLKYELDDHQKEIRKDLRDLSFLTIDPASALDLDDAIYVKKIDDD----S 289
Query: 233 YEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCG 292
Y + V IADV H+VK D +D+ A +++T+VYL ++ I M+P +S + ++ G
Sbjct: 290 YNLKVAIADVCHYVKFDGPMDRGARTKATSVYLANKVIPMLPEELSND-----LCSLNPG 344
Query: 293 EERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEE 330
++ +D ++S +F+ +II S +YEE
Sbjct: 345 VDKFVIVGDLMIDGTGKIMSHEFYPAIINSHKRFSYEE 382
>UniRef50_Q6FZS0 Cluster: Exoribonuclease, VacB and RNase II family;
n=3; Bartonella|Rep: Exoribonuclease, VacB and RNase II
family - Bartonella quintana (Rochalimaea quintana)
Length = 758
Score = 81.4 bits (192), Expect = 4e-14
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 5/141 (3%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R D R + ++DPP D DDA++A + + + V IADV+++VK +ALD+E
Sbjct: 265 REDWRQMPFITIDPPDAKDHDDAVYATKDKDPANSGGWIIVVAIADVSYYVKTGSALDQE 324
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
A R +VY D + M+P +S + + G+ER A + D N N F
Sbjct: 325 ALKRGNSVYFPDYVVPMLPERISNN-----LCSLREGKERPALAVRMIFDANGNKRKHSF 379
Query: 316 HKSIIKSKAAMTYEEAQIAID 336
H+ +++ +A ++Y+E Q+AID
Sbjct: 380 HRVMMRVRAKLSYQEVQLAID 400
>UniRef50_Q1DGB6 Cluster: 3'-5' exoribonuclease, VacB/RNase II
family; n=2; Cystobacterineae|Rep: 3'-5'
exoribonuclease, VacB/RNase II family - Myxococcus
xanthus (strain DK 1622)
Length = 631
Score = 81.4 bits (192), Expect = 4e-14
Identities = 52/141 (36%), Positives = 73/141 (51%), Gaps = 8/141 (5%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R DLRDV +VD P DIDDA+ G L V IADV +VK +ALD E
Sbjct: 176 RRDLRDVPTVTVDAPSTRDIDDAISVLPAGPDGALRLL---VSIADVGEYVKQGSALDAE 232
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
A R+T+VYL R + M+P +S + L + GEERL + +D V +
Sbjct: 233 ARERATSVYLAGRVLPMLPEALS-----SHWLSLMPGEERLCLTVELRIDPQGRVTAADV 287
Query: 316 HKSIIKSKAAMTYEEAQIAID 336
++S+I+S A + Y+E +D
Sbjct: 288 YESVIRSWARLNYDEVAAFLD 308
>UniRef50_Q9BYK8 Cluster: Peroxisomal proliferator-activated receptor
A-interacting complex 285 kDa protein; n=17;
Euarchontoglires|Rep: Peroxisomal proliferator-activated
receptor A-interacting complex 285 kDa protein - Homo
sapiens (Human)
Length = 2649
Score = 81.4 bits (192), Expect = 4e-14
Identities = 70/238 (29%), Positives = 110/238 (46%), Gaps = 14/238 (5%)
Query: 101 LFTPAEKRIPRVRIETRQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENE 160
+++ + R+ RV +E +E S+ V + W + YPLG +VR +P +
Sbjct: 1239 IYSLRKGRLQRVGLERLTAEARHSRLFWVQIVLWRQGFYYPLG-IVREVLPEASTWEQGL 1297
Query: 161 VIL-LEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDAL 219
IL LE+ + +A + + T +R D R +VDP G ++DDAL
Sbjct: 1298 RILGLEYSLRVPPSDQATITKVLQKYHTELGRVAGRREDCRAFLTFTVDPQGACNLDDAL 1357
Query: 220 HARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRR-IDMVPGNVS 278
R LG EV VHI DV FV D LD EA + Y R + M+P ++
Sbjct: 1358 SVRDLG-----PRCEVAVHITDVASFVPRDGVLDVEARRQGAAFYAPGREPVPMLPASLC 1412
Query: 279 VTTVKYYILQVSCGEERLAFSCVWEMDENANVL-STKFHKSIIKSKAAMTYEEAQIAI 335
+L + G +RLA S M++ + L S +F S+++S ++YEEA+ I
Sbjct: 1413 QD-----VLSLLPGRDRLAISLFLTMEKASGQLKSLRFAPSVVQSDRQLSYEEAEEVI 1465
>UniRef50_Q8F9Z7 Cluster: VacB protein; n=4; Leptospira|Rep: VacB
protein - Leptospira interrogans
Length = 748
Score = 81.0 bits (191), Expect = 5e-14
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 10/163 (6%)
Query: 173 FSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLAT 232
+ E ++ LP ++ +RVDLR++ ++D D DDA+ + + +
Sbjct: 275 YPENIILDLPEEVNESTVDDWNERVDLRNLKCITIDGEYSKDFDDAISF--IEEKNRIRF 332
Query: 233 YEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCG 292
Y VHIADV+++V+P LD+EA +R+T+VYL R + M+P +S + + + G
Sbjct: 333 Y---VHIADVSYYVRPGNDLDEEAYNRATSVYLGSRVVPMLPPELSES-----LCSLIAG 384
Query: 293 EERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAI 335
+ RLAF+ E D + K++KSII K TY +A+ I
Sbjct: 385 KNRLAFTVEMEADWKGKITHAKYYKSIINVKERYTYNKAESEI 427
>UniRef50_Q6AMK8 Cluster: Related to ribonuclease R; n=1;
Desulfotalea psychrophila|Rep: Related to ribonuclease R
- Desulfotalea psychrophila
Length = 590
Score = 81.0 bits (191), Expect = 5e-14
Identities = 60/180 (33%), Positives = 86/180 (47%), Gaps = 17/180 (9%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R+D + ++D P D DDAL + G + Y VGVHI+DV H+V+P L +E
Sbjct: 203 RIDYTHLKPITIDGPTTQDFDDALTIEKDGEN-----YLVGVHISDVAHYVRPGDPLFQE 257
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
A R T++Y + +I M+P ++S I + GE R A S + + A VL +
Sbjct: 258 AMQRGTSIYFPEGQIPMLPRHLS-----QGICSLIQGEIRAALSFMILLSPEAEVLRVRI 312
Query: 316 HKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXXXXXXXXDSGALLLASPEI 375
SIIK +TYEEA DS KD+ D+GALLL P++
Sbjct: 313 RPSIIKVARRLTYEEA-----DSMLKDD--NEIKMLNKVSQRLRQRRIDNGALLLPFPDV 365
>UniRef50_A6GC79 Cluster: Ribonuclease R; n=1; Plesiocystis pacifica
SIR-1|Rep: Ribonuclease R - Plesiocystis pacifica SIR-1
Length = 660
Score = 81.0 bits (191), Expect = 5e-14
Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Query: 190 EEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPD 249
+E+ + R DLR + ++DPP D DDA+ LG A Y + V +ADV+H+V+
Sbjct: 175 DEDLENRADLRGLAFMTIDPPDARDFDDAVCVELLGEDPQTADYRLHVAVADVSHYVQEG 234
Query: 250 TALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENAN 309
TA+D+EA R + YL DR I M+P +S ++ + +RLA ++
Sbjct: 235 TAIDEEAQRRCFSTYLPDRSIPMLPPELS-----SHMCSLVPKRDRLAMVTSMRVNAAGQ 289
Query: 310 VLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAK 346
+ +II S+ +TY E ++ + + + A+
Sbjct: 290 TSEHEVRAAIIHSRRRLTYAEVAEELEGAEQLGKKAR 326
>UniRef50_A0Y7J7 Cluster: Ribonuclease R; n=1; marine gamma
proteobacterium HTCC2143|Rep: Ribonuclease R - marine
gamma proteobacterium HTCC2143
Length = 821
Score = 81.0 bits (191), Expect = 5e-14
Identities = 74/275 (26%), Positives = 124/275 (45%), Gaps = 21/275 (7%)
Query: 72 GKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQS--EILASQRILV 129
G +V +I Q G L +G +P RI I R+ E Q ++V
Sbjct: 144 GVIVEVISHNTHQLVGRLYDE--NGVV--FVSPDNARINHDVIVPREEIGEAGVDQYVMV 199
Query: 130 ALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIP 189
+ P + P G +V + E +V + H++PH ++ EAV
Sbjct: 200 EITGQPGWRKPPTGRVVEVLGDHMAPGMEIDVAIRAHNIPH-QWPEAVEIEAQALSAEPE 258
Query: 190 EEERQKRVDLRDVCVCSVDPPGCTDIDDALH--ARRLGSSDGLATYEVGVHIADVTHFVK 247
E+++Q R+DLR + ++D D DDA++ A++ G + + V IADV+H+VK
Sbjct: 259 EKDKQHRIDLRALPFVTIDGEDARDFDDAVYCEAKKTGG------WRLWVAIADVSHYVK 312
Query: 248 PDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDEN 307
++ALDKEA R +VY ++ + M+P +S + + +RL C +
Sbjct: 313 VNSALDKEATLRGNSVYFPEQVVPMLPEALS-----NGLCSLKPAVDRLCMVCEMTISSA 367
Query: 308 ANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKD 342
V F++ ++ S A +TY + AI DS D
Sbjct: 368 GKVSGYYFYEGVMHSHARLTYNKVG-AILDSKNPD 401
>UniRef50_A0LG74 Cluster: Exoribonuclease II; n=1; Syntrophobacter
fumaroxidans MPOB|Rep: Exoribonuclease II -
Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
Length = 680
Score = 80.6 bits (190), Expect = 6e-14
Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 12/151 (7%)
Query: 190 EEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPD 249
E E Q+R DLR + +VD D DDAL R L DG +EVG+HIAD FV
Sbjct: 279 ETEPQRR-DLRHLDCLTVDSALTRDYDDALSFRAL---DG-NRFEVGIHIADAAEFVLKG 333
Query: 250 TALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENAN 309
LD+EA R+T++YL D RI M+P +S + + GE+R A S ++ + +
Sbjct: 334 DVLDREAERRATSIYLPDARISMLPVPLSED-----LCSLKAGEDRPALSFLFVVHGDGT 388
Query: 310 VLSTKFHKSIIKSKAAMTYEEA--QIAIDDS 338
+ ++ S I+ +TYEE +I +DDS
Sbjct: 389 IAGSEIVSSTIRVAEQLTYEEVNERIRLDDS 419
>UniRef50_Q6KI25 Cluster: Vacb-like ribonuclease II; n=2; cellular
organisms|Rep: Vacb-like ribonuclease II - Mycoplasma
mobile
Length = 708
Score = 80.2 bits (189), Expect = 9e-14
Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 10/162 (6%)
Query: 183 PNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADV 242
P + +EE R D R+ + ++D D DDA+ + G + + + VHIADV
Sbjct: 231 PQSISREKEEINNRRDYREKLIVTIDGDDTKDFDDAILVEKKGDN-----FILSVHIADV 285
Query: 243 THFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVW 302
+++VK ++ +D EA SR T++YL DR I M+P ++S I ++ +R
Sbjct: 286 SYYVKENSPIDLEALSRGTSIYLADRVIPMLPESLS-----NGICSLNPNVDRFTMGIEM 340
Query: 303 EMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEI 344
E+DE + ++ SII SK +TY+E ++ D++
Sbjct: 341 EIDEKGRTIRSEIFPSIINSKKRLTYKEVNRFYNNEISFDDV 382
>UniRef50_Q6MQN7 Cluster: Ribonuclease R; n=1; Bdellovibrio
bacteriovorus|Rep: Ribonuclease R - Bdellovibrio
bacteriovorus
Length = 858
Score = 79.8 bits (188), Expect = 1e-13
Identities = 60/221 (27%), Positives = 110/221 (49%), Gaps = 13/221 (5%)
Query: 118 QSEILASQRILVALD--SWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSE 175
+ + A + LVA + S+P + + G ++ + D + + ++ + +P FS+
Sbjct: 105 EDSMQAKDKELVAAEITSYPDDGKPFTGKVIEIIGDAMDPLTDLKRVIRANHIP-LEFSK 163
Query: 176 AVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEV 235
A L E++ + R DLRD + ++D D DDA++ L ++G Y
Sbjct: 164 ATLEEAEHFSEVPDEKDFKGRRDLRDKALITIDGATAKDFDDAVYVETL--NEGFLLY-- 219
Query: 236 GVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEER 295
V IADV+H+VK TA+DK+A R T+VY+ + + M+P + + ++ R
Sbjct: 220 -VAIADVSHYVKIGTAIDKDAYERGTSVYMPNFVVPMLP-----EVLSNGLCSLNPHVPR 273
Query: 296 LAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAID 336
L D ++ + F++++++SKA +TY EAQ ID
Sbjct: 274 LCLVAEMLFDFTGELVKSDFYEAVMESKARVTYGEAQEIID 314
>UniRef50_Q3A2L6 Cluster: Exoribonuclease RNase R; n=1; Pelobacter
carbinolicus DSM 2380|Rep: Exoribonuclease RNase R -
Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 720
Score = 79.0 bits (186), Expect = 2e-13
Identities = 64/261 (24%), Positives = 114/261 (43%), Gaps = 16/261 (6%)
Query: 72 GKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPR--VRIETRQSEILASQRILV 129
G+V+ ++ R + G P +G + P++ + + + + A ++V
Sbjct: 123 GRVLRVLSRAHQTIVGTYRPGHGYG----MVLPSDPALSHGIMLLSPAPGDAHAGDLVVV 178
Query: 130 ALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIP 189
++ +P P G +V + D E + ++P FS A L +
Sbjct: 179 SIAQYPGRREPPRGVMVEVLGDPADPQVEILAAAYKFNLPR-EFSTATLEQARSIAPVVR 237
Query: 190 EEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPD 249
EE+ R DLR ++D D DDA+ R + + V IADV H+V PD
Sbjct: 238 EEDLAGREDLRSTLFVTIDGETAKDFDDAVAVSR----EPGGCMRLWVAIADVGHYVAPD 293
Query: 250 TALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENAN 309
+ +D++A R T+VY + M+P +S I ++ G +RL + D+
Sbjct: 294 SPIDRDAKERGTSVYFPGSCLPMLPEALS-----NGICSLNPGVDRLVLTAEMLFDKQGV 348
Query: 310 VLSTKFHKSIIKSKAAMTYEE 330
+L ++F ++I SKA +TY E
Sbjct: 349 MLESRFFHAVICSKARLTYRE 369
>UniRef50_Q1NRA8 Cluster: Exoribonuclease II; n=1; delta
proteobacterium MLMS-1|Rep: Exoribonuclease II - delta
proteobacterium MLMS-1
Length = 663
Score = 79.0 bits (186), Expect = 2e-13
Identities = 59/236 (25%), Positives = 108/236 (45%), Gaps = 20/236 (8%)
Query: 145 LVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCV 204
+ +L V T + + LL+ ++P E + + E + R DLR + V
Sbjct: 222 IFQLLVTTGHWQPDENLPLLKAELPVEFAPEELAAAEAMGEPEAAELLAEGRRDLRQLPV 281
Query: 205 CSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVY 264
++D D+DDALH +R G A ++VG+HIADV HFVKP + L A R T++Y
Sbjct: 282 MTIDGASTRDLDDALHIQRQG-----ANFQVGIHIADVAHFVKPGSILFNAAVRRVTSLY 336
Query: 265 LVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKA 324
+ ++ M+P +S + + G R A S + + ++ + ++++ K
Sbjct: 337 FPEGQVPMLPPRLSEN-----LCSLLAGRPRPAMSFLLTITPQGEIVDSSIEATVVEVKK 391
Query: 325 AMTYEEAQ--IAIDDSSRKDEIAKSXXXXXXXXXXXXXXXXDSGALLLASPEIRFQ 378
+ Y++ + +A D +D + S ++GALLL P++ +
Sbjct: 392 RLDYDQVEELLAAGDRDLQDLLGLS--------QTLRRRRLEAGALLLPIPDVNIK 439
>UniRef50_O84402 Cluster: Ribonuclease R; n=8; Chlamydiaceae|Rep:
Ribonuclease R - Chlamydia trachomatis
Length = 694
Score = 79.0 bits (186), Expect = 2e-13
Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 9/141 (6%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R DLRD+ ++D D DDA+ + D Y +GVHIADV+H+V P++ALD+E
Sbjct: 204 RKDLRDLLCFTIDSSSAKDFDDAVSL----TYDHEGNYILGVHIADVSHYVTPNSALDRE 259
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
AA R ++Y + I M+P +S + + +RLA S + + +
Sbjct: 260 AAKRCNSIYFPGKVIPMLPSALSDN-----LCSLKPNVDRLAVSVFMTFSKEGFLSDYRI 314
Query: 316 HKSIIKSKAAMTYEEAQIAID 336
+S+I+SK MTY+E I+
Sbjct: 315 LRSVIRSKYRMTYDEVDEIIE 335
>UniRef50_Q14Q19 Cluster: Probable ribonuclease r protein; n=1;
Spiroplasma citri|Rep: Probable ribonuclease r protein -
Spiroplasma citri
Length = 705
Score = 77.8 bits (183), Expect = 5e-13
Identities = 68/294 (23%), Positives = 135/294 (45%), Gaps = 17/294 (5%)
Query: 41 KTEDPENILEEETVLLDAAKPVDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRH 100
K +D N L+++ VL K ++++ +V+ +++R G++ ++
Sbjct: 92 KQDDLNNALDQDQVLFILKKQKNDNNSKKAEAQVIKVLKRNNEYVVGVIKKNRHQQKYLE 151
Query: 101 LFTPAEKRIPRVRIET-RQSEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAEN 159
+ ++ + R E E + + + + S + ++ + T +
Sbjct: 152 ILN---NKLTQYRAEIINLDEAIENTIVKGIITSINSKNNLMQVKIIEIIGNTNQVGVDV 208
Query: 160 EVILLEHDVPHARFSEAVL---NCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDID 216
IL E ++ +F+E L N + N + R DL+ ++D D D
Sbjct: 209 LAILHEFNI-RTKFNEEALTEANQINQNIDVATMLANKSRRDLQTEMFVTIDGNDSKDFD 267
Query: 217 DALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGN 276
DA+ ++ + +G Y + V IADV H+ ++ LDKEA R +VYL+DR + M+P
Sbjct: 268 DAILVKK--NQNG--NYLLLVAIADVAHYAPHNSYLDKEAFERGCSVYLIDRVVPMLPEK 323
Query: 277 VSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEE 330
+S I ++ E RL C E+D+ +V+++ ++++I SKA +TY+E
Sbjct: 324 LS-----NGICSLNPFEPRLTLICEMEIDQQGHVVNSSIYEAVIISKARLTYDE 372
>UniRef50_A7HAA8 Cluster: Ribonuclease R; n=4; cellular
organisms|Rep: Ribonuclease R - Anaeromyxobacter sp.
Fw109-5
Length = 910
Score = 77.8 bits (183), Expect = 5e-13
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 7/140 (5%)
Query: 191 EERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDT 250
E+RQ R DL + + ++D D DDA+H RL GL Y + V IADV H+V+P
Sbjct: 262 EDRQGRRDLTALPLVTIDGEDARDFDDAVHVERLEGRKGL--YRLVVAIADVAHYVRPGA 319
Query: 251 ALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANV 310
ALD EA R T+VY + + M+P +S I ++ +RL +DE+
Sbjct: 320 ALDAEAGRRGTSVYFPMQVLPMLPERLS-----NGICSLNPDVDRLCMVADLVVDEHGET 374
Query: 311 LSTKFHKSIIKSKAAMTYEE 330
S + ++ +++S A TY E
Sbjct: 375 RSAEVYEGVMRSAARCTYTE 394
>UniRef50_A0JYP3 Cluster: Ribonuclease II; n=3; Actinobacteria
(class)|Rep: Ribonuclease II - Arthrobacter sp. (strain
FB24)
Length = 490
Score = 77.8 bits (183), Expect = 5e-13
Identities = 53/149 (35%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Query: 191 EERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDT 250
E + +DL DV ++DPP TD+D AL R G DG Y+V IADV FV P
Sbjct: 48 EHKMPDLDLTDVGFVTIDPPSSTDLDQALFIERSG--DG---YKVFYAIADVPSFVAPGG 102
Query: 251 ALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANV 310
ALD E R T Y D RI + P +S + G+ AF +++D A V
Sbjct: 103 ALDAETRRRGQTFYAPDGRIPLHPEVISEQAG-----SLLAGQLCAAFVWEFDLDAAAQV 157
Query: 311 LSTKFHKSIIKSKAAMTYEEAQIAIDDSS 339
+S ++ I+S+A +TY+ Q +D S
Sbjct: 158 VSVLVRRARIRSRAKLTYKGVQAELDSGS 186
>UniRef50_A1IC27 Cluster: Exoribonuclease II; n=1; Candidatus
Desulfococcus oleovorans Hxd3|Rep: Exoribonuclease II -
Candidatus Desulfococcus oleovorans Hxd3
Length = 666
Score = 77.4 bits (182), Expect = 6e-13
Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 16/184 (8%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
RVDL + + ++D D DDAL + + +G+HI+DV H++K + LD E
Sbjct: 274 RVDLTGLSLFTIDGSQTLDFDDALSLEPMENG----ACRLGIHISDVGHYIKKEDPLDAE 329
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
A R +++Y D++I M+P +S + + G+ R A S + + +A V+ +
Sbjct: 330 ALKRGSSIYTADKKIPMLPAEISEG-----LCSLVAGKPRPAISMLITLSSSAEVMECRV 384
Query: 316 HKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXXXXXXXXDSGALLLASPEI 375
S+I+ + +TY + +++D R +++ GALL+ PE+
Sbjct: 385 VASVIRVENHLTYSQVNLSLDKDERLGRLSR-------IAVRLREKRVRDGALLIEIPEL 437
Query: 376 RFQF 379
QF
Sbjct: 438 YVQF 441
>UniRef50_Q6ALZ0 Cluster: Related to ribonuclease R; n=1;
Desulfotalea psychrophila|Rep: Related to ribonuclease R
- Desulfotalea psychrophila
Length = 721
Score = 77.0 bits (181), Expect = 8e-13
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 10/147 (6%)
Query: 190 EEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPD 249
E+ KRVDLRD+ ++D D DDA+ + G + + V IADV+HFVK
Sbjct: 262 EDHDPKRVDLRDIKFVTIDGDTAKDFDDAVCVEKRG-----VNFRLYVAIADVSHFVKVG 316
Query: 250 TALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENAN 309
+ALD++A R T+VY I M+P +S + + E+RL + + ++D
Sbjct: 317 SALDRDAYERGTSVYFPGTVIPMLPEKLSNN-----LCSLVPDEDRLTLTAILDIDRAGK 371
Query: 310 VLSTKFHKSIIKSKAAMTYEEAQIAID 336
+ F +S+I+S+ TY Q +D
Sbjct: 372 LQKKSFCRSLIRSQHRFTYTRVQEILD 398
>UniRef50_A3VTQ9 Cluster: 3'-5' exoribonuclease, VacB and RNase
II/Ribonuclease R; n=1; Parvularcula bermudensis
HTCC2503|Rep: 3'-5' exoribonuclease, VacB and RNase
II/Ribonuclease R - Parvularcula bermudensis HTCC2503
Length = 830
Score = 77.0 bits (181), Expect = 8e-13
Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 14/194 (7%)
Query: 143 GHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDV 202
G +V + D+ + + L E D+P F V+ T+P + DLR +
Sbjct: 204 GRIVSIEGHVDDRTNWSLIALAEQDIP-IHFPPEVVEAAEA--LTLPSDLSPYE-DLRAL 259
Query: 203 CVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTT 262
+ ++DP D DDA+ A + + + V IADV +V+P + LD+EA R +
Sbjct: 260 PLITIDPKEAKDHDDAVFAEPIDEG-----FRIVVAIADVAQYVRPGSPLDQEAKRRGNS 314
Query: 263 VYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKS 322
VYL+DR + M+P +S + + GE+R A C + N +F +++I
Sbjct: 315 VYLIDRVVPMLPEALS-----NGLCSLKAGEDRTALCCELIIGPNGGRKRHRFFRALINC 369
Query: 323 KAAMTYEEAQIAID 336
+ YEEAQ A D
Sbjct: 370 HRGLAYEEAQAAAD 383
>UniRef50_UPI0000ECA91C Cluster: Peroxisomal proliferator-activated
receptor A-interacting complex 285 kDa protein (EC
3.6.1.-) (ATP-dependent helicase PRIC285) (PPAR-alpha-
interacting complex protein 285) (PPAR-gamma
DBD-interacting protein 1) (PDIP1).; n=3; Amniota|Rep:
Peroxisomal proliferator-activated receptor A-interacting
complex 285 kDa protein (EC 3.6.1.-) (ATP-dependent
helicase PRIC285) (PPAR-alpha- interacting complex
protein 285) (PPAR-gamma DBD-interacting protein 1)
(PDIP1). - Gallus gallus
Length = 2565
Score = 76.6 bits (180), Expect = 1e-12
Identities = 73/301 (24%), Positives = 127/301 (42%), Gaps = 34/301 (11%)
Query: 64 NDDEITPTGKVVGIIRRKWRQYCGILMPSKFHG--------ATRHLFTPAEKRIPRV--- 112
+ + P GKVVGI++R R+ I +F +F P K P V
Sbjct: 1098 DSSSLRPQGKVVGILKRAERERNFICTMDEFDPRVMIPIDPTVTKIFVPGLKEKPNVIPI 1157
Query: 113 -RIETRQSEILASQRI----------LVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEV 161
++ + ++++ ++I V + +W YPLG + + + +
Sbjct: 1158 RKLVNGKYKVVSCKKINQDTRRCQIFSVQIIAWREGFYYPLGIVTEILHVALTSEEGLRI 1217
Query: 162 ILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHA 221
+ LE+ + + + + P ++ D R +VDP G D+DDA+
Sbjct: 1218 LNLEYGLERKHPAVVTKELAKYSTSSKPNPSKENLRDCRSYLTFTVDPQGARDLDDAVSV 1277
Query: 222 RRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRR-IDMVPGNVSVT 280
R LG YE+G+HIADV V +A+D EA R + Y ++ + M+P VS
Sbjct: 1278 RDLGHQ-----YEIGIHIADVASIVPKGSAVDVEAKKRGVSYYAPEQEPVHMLPPRVSND 1332
Query: 281 TVKYYILQVSCGEERLAFSCVWEMDENAN-VLSTKFHKSIIKSKAAMTYEEAQIAIDDSS 339
I + ++R S +++ + V F S+I S ++YEEA++ I D
Sbjct: 1333 -----ICSLLPQKDRRVISLFVIVEKKTDKVTDGNFTLSVICSDWQLSYEEAELCIQDHY 1387
Query: 340 R 340
R
Sbjct: 1388 R 1388
>UniRef50_Q1K2V6 Cluster: Ribonuclease R; n=1; Desulfuromonas
acetoxidans DSM 684|Rep: Ribonuclease R - Desulfuromonas
acetoxidans DSM 684
Length = 722
Score = 76.6 bits (180), Expect = 1e-12
Identities = 68/268 (25%), Positives = 119/268 (44%), Gaps = 13/268 (4%)
Query: 70 PTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIP-RVRIETRQSEILASQRIL 128
P G +V +++R G+ + G +F + + V +R +L Q ++
Sbjct: 121 PEGWIVEVVKRSRETLLGVCEKNSRQGGV--VFRSEQGGLTFDVDDRSRDVSLLVGQVVV 178
Query: 129 VALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTI 188
+ +D +P LGH+V + + + + +P+ RFS AV +
Sbjct: 179 LRIDRYPAMHENGLGHIVDVLGHAGSPEVDILSTVHRLGIPN-RFSAAVEQAASAIAAEV 237
Query: 189 PEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKP 248
P E R DL + ++D D DDA+ R S DG + + V IADV ++V+
Sbjct: 238 PPEVVAARADLCSLPFVTIDGADARDFDDAVCLAR--SEDG--HWRLHVAIADVGYYVEE 293
Query: 249 DTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENA 308
+ALD EA R T+VY R + M+P +S I + +ERL D+
Sbjct: 294 GSALDLEARERGTSVYFPSRCLPMLPQALS-----NGICSLQPEKERLVVVAEITFDDLG 348
Query: 309 NVLSTKFHKSIIKSKAAMTYEEAQIAID 336
L+ + +++ I+S+ + YE+ Q +D
Sbjct: 349 RRLNFEAYRATIRSRQRLIYEQVQQVLD 376
>UniRef50_A3YBG8 Cluster: Ribonuclease R; n=1; Marinomonas sp.
MED121|Rep: Ribonuclease R - Marinomonas sp. MED121
Length = 874
Score = 76.6 bits (180), Expect = 1e-12
Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 11/171 (6%)
Query: 158 ENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDD 217
E +V L ++VPH + +AV+ + + EE++ RVDLRD ++D D DD
Sbjct: 230 EIDVALHRYEVPH-EWPDAVIKQVKKIGVEVAEEDKINRVDLRDRPFVTIDGEDARDFDD 288
Query: 218 ALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNV 277
A+ + + G Y V IADV+H+VK +ALD EA R +VY R I M+P +
Sbjct: 289 AVMCEK--TPGGWKLY---VAIADVSHYVKKGSALDAEAIVRGNSVYFPGRVIPMLPEAL 343
Query: 278 SVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTY 328
S + ++ +RLA + + S KF++ +I+S A +TY
Sbjct: 344 S-----NGLCSLNPDVDRLAMVAEISLTSRGKMRSYKFYEGLIRSHARLTY 389
>UniRef50_Q0GXV6 Cluster: Putative ribonuclease; n=1; Lactococcus
phage Q54|Rep: Putative ribonuclease - Lactococcus phage
Q54
Length = 528
Score = 76.6 bits (180), Expect = 1e-12
Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 10/148 (6%)
Query: 191 EERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDT 250
EE RVDL D + ++D D+DDA+ +L + + +++ V IADV+H+V +
Sbjct: 37 EEWDGRVDLTDKLIFAIDSETTKDVDDAVSVEKLPNGN----FKLLVAIADVSHYVTEGS 92
Query: 251 ALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANV 310
+LD+EA SR T+VY+ D M+P +S I ++ G+ RLA + E+D NV
Sbjct: 93 SLDREAYSRGTSVYVADFVSPMLPPALSNN-----ICSLNDGKVRLALAAEMEIDLRGNV 147
Query: 311 LSTKFHKSIIKSKAAMTYEEAQIAIDDS 338
ST ++++K K +TY + D+
Sbjct: 148 KSTNLFEAVVKVK-QITYTQVNSVYKDN 174
>UniRef50_Q30T59 Cluster: Exoribonuclease II; n=1; Thiomicrospira
denitrificans ATCC 33889|Rep: Exoribonuclease II -
Thiomicrospira denitrificans (strain ATCC 33889 / DSM
1351)
Length = 649
Score = 76.2 bits (179), Expect = 1e-12
Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 14/173 (8%)
Query: 159 NEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDA 218
+E I+L H H F VL + + + + RVDLR + C++DP D DDA
Sbjct: 178 DEKIVLAHYNKHDAFEPEVLE-IASSFTEVDASKHPLRVDLRKLPFCTIDPVTAKDFDDA 236
Query: 219 LHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVS 278
++ S+ + V IADV+++V+P A+D EA RS ++YL R I M+P +S
Sbjct: 237 IYYDEKEST-------LYVAIADVSYYVEPFGAIDNEAIYRSFSIYLPHRSIPMLPRELS 289
Query: 279 VTTVKYYILQVSCGEERLAFSCVWEMD-ENANVLSTKFHKSIIKSKAAMTYEE 330
T + + +RLA+ ++D E V S+K +++II S+ YEE
Sbjct: 290 ET-----LCSLQPHVDRLAYVFEMKLDLETLEVSSSKVYEAIIHSQRRFNYEE 337
>UniRef50_A7AQY3 Cluster: RNB-like protein; n=1; Babesia bovis|Rep:
RNB-like protein - Babesia bovis
Length = 983
Score = 76.2 bits (179), Expect = 1e-12
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 6/180 (3%)
Query: 128 LVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWT 187
L+ SW N P G + R+ + + +++ + FS+ VL L
Sbjct: 327 LMRFISWDENDIEPSGVITRVIGDVTEPYSRMYSLMVFRGLNPNGFSDEVLRNLDDLIQQ 386
Query: 188 IPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVK 247
+ R D RD+ V ++DP D+DDAL DG Y VGVHIADV+H+V
Sbjct: 387 AELTKYDNRHDRRDLTVITIDPQDAKDLDDALSVETR-CLDGKYVYTVGVHIADVSHYVT 445
Query: 248 PDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDEN 307
+ +D +A R+T+VYL + M+P +S + + G E+L FS ++ E+
Sbjct: 446 EGSLVDLDARERATSVYLEHQVFPMLPQMLSEK-----LCSLLPGSEKLCFSMFADLSED 500
>UniRef50_Q9A5J4 Cluster: Exoribonuclease, VacB and RNase II family;
n=2; Alphaproteobacteria|Rep: Exoribonuclease, VacB and
RNase II family - Caulobacter crescentus (Caulobacter
vibrioides)
Length = 760
Score = 75.4 bits (177), Expect = 2e-12
Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 10/183 (5%)
Query: 154 DKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCT 213
D A + + + H +P FSEA T E R DLRD+ ++DP
Sbjct: 225 DPRAASLIAIHSHGIPTG-FSEAA----EAEAKTAVEPTLAGREDLRDLPFVTIDPVDAR 279
Query: 214 DIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMV 273
D DDA++A + V V IADV +V+P +ALD++A + +VY DR M+
Sbjct: 280 DHDDAVYAHPDEDETNKGGFVVWVAIADVAAYVRPGSALDRDAREKGNSVYFPDRVEPML 339
Query: 274 PGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQI 333
P T+ + + E R + D++ +F + +++S A ++YE+AQ
Sbjct: 340 P-----ETLSNGLCSLRESENRATLAVRMVFDKSGRKKGHRFVRGLMRSAAKLSYEQAQA 394
Query: 334 AID 336
AID
Sbjct: 395 AID 397
>UniRef50_Q3SL56 Cluster: Exoribonuclease II; n=1; Thiobacillus
denitrificans ATCC 25259|Rep: Exoribonuclease II -
Thiobacillus denitrificans (strain ATCC 25259)
Length = 758
Score = 75.4 bits (177), Expect = 2e-12
Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 12/209 (5%)
Query: 123 ASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLP 182
+ Q + V + S P +G + + E E+ L +HD+P+ E
Sbjct: 205 SGQVVTVEIVSQPGAHNEAVGRVTEVLGSFTGPGMEIEIALRKHDLPYVFPPEVEAQASK 264
Query: 183 -PNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIAD 241
PN + +++ R D+R + + ++D D DDA++ LG S Y + V IAD
Sbjct: 265 LPNK--VLKKDLAGREDIRQLPLVTIDGETARDFDDAVYCEPLGRSG----YRLVVAIAD 318
Query: 242 VTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCV 301
V+H+V P ALD E +R +VY R I M+P +S + ++ +RL+ C
Sbjct: 319 VSHYVHPRDALDSEGFNRGNSVYFPRRVIPMLPEALS-----NGLCSLNPEVDRLSMVCD 373
Query: 302 WEMDENANVLSTKFHKSIIKSKAAMTYEE 330
+ N+ +F+ ++I S A +TY +
Sbjct: 374 MRITTAGNIKEYRFYPAVIHSHARLTYNQ 402
>UniRef50_Q0EWH9 Cluster: Exoribonuclease II; n=1; Mariprofundus
ferrooxydans PV-1|Rep: Exoribonuclease II -
Mariprofundus ferrooxydans PV-1
Length = 707
Score = 75.4 bits (177), Expect = 2e-12
Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 14/191 (7%)
Query: 190 EEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPD 249
E + + R DLR + ++D D DDA+ G +E V IADV+H+V+P
Sbjct: 238 ESDIKGRKDLRHIPFVTIDGEDARDFDDAVCVLPRGEG-----FEAWVSIADVSHYVRPH 292
Query: 250 TALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENAN 309
+ALDKEA +RS + Y DR I M+P +S + ++ RL + D N
Sbjct: 293 SALDKEALARSNSFYFPDRVIPMLPEKLS-----NGLCSLNPHLPRLGMTVRMRFDANGT 347
Query: 310 VLSTKFHKSIIKSKAAMTYEEAQIAIDD----SSRKDEIAKSXXXXXXXXXXXXXXXXDS 365
S ++S+I S+A +TY +A +++ + K E+ +
Sbjct: 348 RRSIHVYESVIHSQARLTYTQASAWLEERDETAVEKPELREMLDDAARLFRKLEKKRKQR 407
Query: 366 GALLLASPEIR 376
GAL L PE+R
Sbjct: 408 GALDLDMPEVR 418
>UniRef50_A6CFY5 Cluster: Ribonuclease R; n=1; Planctomyces maris
DSM 8797|Rep: Ribonuclease R - Planctomyces maris DSM
8797
Length = 758
Score = 75.4 bits (177), Expect = 2e-12
Identities = 69/275 (25%), Positives = 112/275 (40%), Gaps = 15/275 (5%)
Query: 121 ILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNC 180
+ + ++++ + +P + G + ++ P + I+ E +P F E VL
Sbjct: 181 VRSEDKVVIDILHFPSKNYLGQGVIAKVLGPHGKAGVDLLSIIYEFGIP-LDFPEEVLAE 239
Query: 181 LPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIA 240
E + R DL + ++DP D DDA+ R D + +GVHIA
Sbjct: 240 AREQASLFDETKLGNRRDLTRETIVTIDPADARDFDDAISLTR----DEKGHWLLGVHIA 295
Query: 241 DVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSC 300
DV HFVK + LD+EA R T+VYL R I M+P +S + + G+ R S
Sbjct: 296 DVAHFVKEGSLLDREAKHRGTSVYLPGRVIPMLPEIIS-----NGLASLQEGQVRFTKSA 350
Query: 301 VWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAI---DDSSR--KDEIAKSXXXXXXXX 355
E + T+F + IK K YE+ + DD + E+ +
Sbjct: 351 FIEFTPEGIPVHTEFANTAIKVKQRFAYEQVLPIVQERDDEGKHVSAEVRELLKNMYQLA 410
Query: 356 XXXXXXXXDSGALLLASPEIRFQFFKKLNIQSIVD 390
+GAL L E++ F K + V+
Sbjct: 411 MMLRGRRFSAGALELHLAEVKLTFDDKHRVTGAVE 445
>UniRef50_A3ZQN3 Cluster: Ribonuclease R; n=1; Blastopirellula
marina DSM 3645|Rep: Ribonuclease R - Blastopirellula
marina DSM 3645
Length = 770
Score = 75.4 bits (177), Expect = 2e-12
Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 10/176 (5%)
Query: 162 ILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHA 221
++ E+D+P F EA L E + R D + ++DP D DDA+
Sbjct: 227 VMREYDLPE-EFPEAALEVAREMADAFDESIGEDRRDETGETIITIDPFDARDFDDAISL 285
Query: 222 RRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTT 281
+L + L +GVHIADV HFV +ALD EA +R+T++YL D+ I M+P +S
Sbjct: 286 TKLDNGHWL----LGVHIADVAHFVPEGSALDTEARNRATSIYLPDKVIPMLPEVISNN- 340
Query: 282 VKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDD 337
+ + + R A + E + + T+ S I+S TYEE + D
Sbjct: 341 ----LASLQPNKIRYAKTAKIEFTPDGTRVHTEVFNSAIRSVRRFTYEEVDEYLAD 392
>UniRef50_Q7UFR0 Cluster: Ribonuclease R; n=1; Pirellula sp.|Rep:
Ribonuclease R - Rhodopirellula baltica
Length = 764
Score = 74.9 bits (176), Expect = 3e-12
Identities = 57/188 (30%), Positives = 87/188 (46%), Gaps = 15/188 (7%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R DL D+ ++DP D DDA+ +R DG + + VHIADV+HFV P LD E
Sbjct: 271 RKDLTDMLTITIDPFDARDFDDAISLQR---EDG--RWRLWVHIADVSHFVPPGGKLDVE 325
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
A R T+VYL DR I M+P +S ++ + RL + EM ++ + ++
Sbjct: 326 ARRRGTSVYLPDRVIPMIPEIIS-----NHLASLQPERMRLVKTVEIEMLDDLTITHSEV 380
Query: 316 HKSIIKSKAAMTYEEAQ--IAIDDSSRK---DEIAKSXXXXXXXXXXXXXXXXDSGALLL 370
H + I+S YE+ IA + +K D I + GAL +
Sbjct: 381 HNAAIRSDKRFNYEQIDQFIASPAAFQKDWGDSICELLTHMHTLAMQIRKRRFKDGALSM 440
Query: 371 ASPEIRFQ 378
P+I+ +
Sbjct: 441 DMPDIKLE 448
>UniRef50_A6Q7D2 Cluster: Ribonuclease; n=1; Sulfurovum sp.
NBC37-1|Rep: Ribonuclease - Sulfurovum sp. (strain
NBC37-1)
Length = 655
Score = 74.9 bits (176), Expect = 3e-12
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 13/155 (8%)
Query: 188 IPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVK 247
+ +EE R+DL + C++DP D DDA++ L TY + V IADV+H+V
Sbjct: 207 VTKEEHTDRIDLTHLDFCTIDPVTAKDFDDAVYF-------DLETYTLYVAIADVSHYVP 259
Query: 248 PDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDEN 307
T +DKEA R T YL + M+P +S I + +RLAF +D+N
Sbjct: 260 YFTEIDKEAKKRGFTTYLPHKSFPMLPRELSEN-----ICSLKPKVDRLAFVAKITLDQN 314
Query: 308 A-NVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRK 341
+ L +F ++II S+ YE ID + ++
Sbjct: 315 SLKPLKEEFFEAIIHSRHRFNYEPVDRIIDTNGKE 349
>UniRef50_Q8EW72 Cluster: 3'-5' exoribonuclease RNase R; n=1;
Mycoplasma penetrans|Rep: 3'-5' exoribonuclease RNase R
- Mycoplasma penetrans
Length = 727
Score = 74.5 bits (175), Expect = 4e-12
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 10/190 (5%)
Query: 156 DAENEVILLEHDVP-HARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTD 214
D N++I + +D F E D+ +EE KR DL + ++DP D
Sbjct: 220 DVGNDIISIVYDNNIDPEFDEETKEETSKIDFGFSQEEDAKRKDLSHINFVTIDPATSKD 279
Query: 215 IDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVP 274
+DDA+ + + DG TY++ V IADV+++VK + L + A R T++YLV++ I M+P
Sbjct: 280 MDDAVCVVK--NKDG--TYKLYVAIADVSYYVKLHSNLWRSALKRGTSIYLVNQVIPMLP 335
Query: 275 GNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIA 334
+S I ++ E+R A C ++D+N + + + +II SK Y+
Sbjct: 336 HKLSNN-----ICSLNPFEKRYAQVCEMDIDKNGEFTNIQVYPAIIFSKYKFAYDNVNDY 390
Query: 335 IDDSSRKDEI 344
I + +E+
Sbjct: 391 IKLKKKIEEV 400
>UniRef50_Q6F1Q7 Cluster: Virulence associated protein, ribonuclease
R; n=3; Mollicutes|Rep: Virulence associated protein,
ribonuclease R - Mesoplasma florum (Acholeplasma florum)
Length = 704
Score = 73.7 bits (173), Expect = 7e-12
Identities = 43/148 (29%), Positives = 81/148 (54%), Gaps = 9/148 (6%)
Query: 183 PNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADV 242
P + + E R+ + L D V ++D D+DDA+ +L + + +++ V IADV
Sbjct: 230 PVEHEVDEINRRMKNSLLDKMVVTIDGIDSKDLDDAICVEKLENGE----FKLYVAIADV 285
Query: 243 THFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVW 302
+H+V+P T LDKEA R + YL +R + M+P +S + ++ ++ A +C
Sbjct: 286 SHYVEPKTPLDKEALIRGNSTYLANRVLPMLPKILSDD-----LCSLNPNTKKFALACEM 340
Query: 303 EMDENANVLSTKFHKSIIKSKAAMTYEE 330
+ D+N ++S + +++I+ SK + Y E
Sbjct: 341 KFDKNGIMISKEVYETIMISKVRLNYNE 368
>UniRef50_Q4AAR6 Cluster: VACB-like ribonuclease II; n=5; Mycoplasma
hyopneumoniae|Rep: VACB-like ribonuclease II -
Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC
10110)
Length = 694
Score = 72.5 bits (170), Expect = 2e-11
Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 11/171 (6%)
Query: 160 EVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDAL 219
++ ++E +V + +FS VL + I E+ R DLRD V ++D D DDA+
Sbjct: 206 KIPIIESEVSN-KFSADVLEEAEKIEKEITNIEKN-RTDLRDELVITIDGEDTKDFDDAI 263
Query: 220 HARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSV 279
++ + L + VHIADV H+VK D+ +D EA R T++YL I M+P +S
Sbjct: 264 SVKKTNEGNFL----LKVHIADVAHYVKQDSPIDVEAQRRGTSIYLPHTVIPMLPEELS- 318
Query: 280 TTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEE 330
I + +R + +++ LS K + S+I SK +TY++
Sbjct: 319 ----NGICSLKPNVDRFTITMESLINKRGENLSIKIYPSVINSKWRLTYKD 365
>UniRef50_Q0BU01 Cluster: Ribonuclease R; n=1; Granulibacter
bethesdensis CGDNIH1|Rep: Ribonuclease R - Granulobacter
bethesdensis (strain ATCC BAA-1260 / CGDNIH1)
Length = 812
Score = 72.5 bits (170), Expect = 2e-11
Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 14/169 (8%)
Query: 166 HDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLG 225
HD+P EA+ +P E+R+ DLRD+ + ++D D DDA+ A R
Sbjct: 304 HDIPQIFPDEALSEARKAR--AVPLEKRE---DLRDIPLITIDGEDARDFDDAVFAER-A 357
Query: 226 SSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYY 285
+DG + + V IADV H+V+P +ALD+EA R + Y DR + M+P +S
Sbjct: 358 ENDG---FRLIVAIADVAHYVRPGSALDREAFKRGNSCYFPDRVVPMLPEALSNGW---- 410
Query: 286 ILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIA 334
+ E+R ++ + +F + +++S A TYEE Q A
Sbjct: 411 -CSLRPDEDRGCLFVEMMINAGGGKIRHRFGRGLMRSTARRTYEEVQQA 458
>UniRef50_A4IWL1 Cluster: Ribonuclease R; n=11; Francisella
tularensis|Rep: Ribonuclease R - Francisella tularensis
subsp. tularensis (strain WY96-3418)
Length = 765
Score = 72.5 bits (170), Expect = 2e-11
Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 9/135 (6%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
RVDLR+ ++D D DDA++A R S ++++ + IADV+++V+ D+ALD +
Sbjct: 261 RVDLRNQHFVTIDGEDAKDFDDAVYAHRTKSG----SWKLYIAIADVSNYVEKDSALDLD 316
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
A RST+VY I M+P +S + + E+R + C + + + KF
Sbjct: 317 AKRRSTSVYFPGYVIPMLPEKLS-----NGLCSLRPNEDRYSLVCEMNISKEGKLSRYKF 371
Query: 316 HKSIIKSKAAMTYEE 330
+ ++I SKA +TY E
Sbjct: 372 YSAVINSKARLTYTE 386
>UniRef50_P57628 Cluster: Ribonuclease R; n=2; Buchnera aphidicola
(Acyrthosiphon pisum)|Rep: Ribonuclease R - Buchnera
aphidicola subsp. Acyrthosiphon pisum (Acyrthosiphon
pisumsymbiotic bacterium)
Length = 731
Score = 72.5 bits (170), Expect = 2e-11
Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 10/214 (4%)
Query: 118 QSEILASQRILVALDSWP-RNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEA 176
+ +I + V L P RNSR G +V + + E+ L H +P + +S+
Sbjct: 183 KDDISIGSIVSVKLKQHPIRNSRVQ-GFIVEILGKEMGTNLAIEIALRTHLIP-SLWSKE 240
Query: 177 VLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVG 236
V + I + + + R DLR ++D D DDA+ +R + + + +
Sbjct: 241 VKKQVYEISRKINQYDFKNRTDLRHFPFFTIDDEDARDFDDAVFCKRKANPE--EGWILW 298
Query: 237 VHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERL 296
V IADV+ +V+P+T LDK A R T+VY I M+P +S + + ERL
Sbjct: 299 VAIADVSCYVQPNTPLDKAALERGTSVYFPSLVIPMLPEKISTD-----LCSLKPNVERL 353
Query: 297 AFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEE 330
C + + ++S K ++ II S TY E
Sbjct: 354 CLICEMSLSKQGELISYKHYEGIICSHGRFTYNE 387
>UniRef50_Q0AQ64 Cluster: Ribonuclease R; n=3; Rhodobacterales|Rep:
Ribonuclease R - Maricaulis maris (strain MCS10)
Length = 754
Score = 72.1 bits (169), Expect = 2e-11
Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 5/148 (3%)
Query: 189 PEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKP 248
P + KR DLR + + ++DP D DDA+ A ++V V IADV +V P
Sbjct: 251 PTARQGKREDLRALPLITIDPDDAKDHDDAVWAAPDDDPKNPGGWQVIVAIADVAAYVTP 310
Query: 249 DTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENA 308
+ALD+ A R +VYL DR + M+P +S + + E+R + D++
Sbjct: 311 GSALDRGAFKRGNSVYLPDRVVPMLPERLSND-----LCSLREKEDRPCLAVRMVFDKSG 365
Query: 309 NVLSTKFHKSIIKSKAAMTYEEAQIAID 336
N S F + ++S A ++Y +AQ AID
Sbjct: 366 NKRSHTFMRGWMRSAAKLSYTQAQDAID 393
>UniRef50_UPI00006A279F Cluster: Peroxisomal proliferator-activated
receptor A-interacting complex 285 kDa protein (EC
3.6.1.-) (ATP-dependent helicase PRIC285) (PPAR-alpha-
interacting complex protein 285) (PPAR-gamma
DBD-interacting protein 1) (PDIP1).; n=2; Xenopus
tropicalis|Rep: Peroxisomal proliferator-activated
receptor A-interacting complex 285 kDa protein (EC
3.6.1.-) (ATP-dependent helicase PRIC285) (PPAR-alpha-
interacting complex protein 285) (PPAR-gamma
DBD-interacting protein 1) (PDIP1). - Xenopus tropicalis
Length = 1286
Score = 71.7 bits (168), Expect = 3e-11
Identities = 87/338 (25%), Positives = 140/338 (41%), Gaps = 30/338 (8%)
Query: 2 RILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKTEDPENILEEETVLLDAAKP 61
RI + G + A GD V ++I P + K +V K EEE L P
Sbjct: 215 RIHINGRVNCGLAFSGDQVVVQILPDTD-PKAGKVVGVLKAS------EEERRFLCFMDP 267
Query: 62 VDNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEI 121
D ++ + R + +C +L + R ++++ ++ E +
Sbjct: 268 HD-------CSIMIPVERSITKIFCPVLKGNPVRVPIRQY---RDRQMRTLKCEPLTPGM 317
Query: 122 LASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCL 181
SQ +V + +W + YPLG + R+ P D EV+ LE V + L
Sbjct: 318 RRSQLFVVQVIAWRKGFYYPLGIVTRILRPIQRLDDGLEVLDLEFGVTGT--GQYPLGAS 375
Query: 182 PPNDWTIPEEERQK-RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIA 240
E + + R D R++ +VDP D+DDA+ + DG YE+GVHI
Sbjct: 376 EEASRLCREAQVEVGRRDCRNILTFTVDPRDAKDLDDAISVQE---RDG--HYEIGVHIT 430
Query: 241 DVTHFVKPDTALDKEAASRSTTVYLVDRR-IDMVPGNVSVTTVKYYILQVSCGEERLAFS 299
D+ + P LD+EA R T Y R M+P V + T + L+ C L+
Sbjct: 431 DLASVIPPGGDLDREAMRRGVTFYSPKREAAHMLP--VPMCTAR-CSLKPLCERRALSLF 487
Query: 300 CVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDD 337
+ E E ++S +S+I S ++YEEA + D
Sbjct: 488 VLVE-KETDWMVSGHLCQSVISSDRQLSYEEANAILAD 524
>UniRef50_Q7MQZ6 Cluster: RIBONUCLEASE; n=2;
Epsilonproteobacteria|Rep: RIBONUCLEASE - Wolinella
succinogenes
Length = 653
Score = 71.3 bits (167), Expect = 4e-11
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 17/154 (11%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R D R + C++DP D DDA++ + + + + V IADV+ +V P + +DKE
Sbjct: 215 RQDFRSLPFCTIDPIDAKDHDDAVY---FDAKESI----LYVAIADVSEYVTPHSPIDKE 267
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEM---DENANVLS 312
A R T+YL + I M+P N+S I + E+RLA+ VW++ A L
Sbjct: 268 ARVRGFTIYLPHKSIPMLPRNLSEN-----ICSLKPQEDRLAY--VWKIRLHKRTALPLK 320
Query: 313 TKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAK 346
+ H++II+SK ++YEE +++ I K
Sbjct: 321 AELHEAIIRSKQKLSYEEVDEFLEEPKANSTILK 354
>UniRef50_Q3IK27 Cluster: Cold-shock RNAse R; n=13;
Gammaproteobacteria|Rep: Cold-shock RNAse R -
Pseudoalteromonas haloplanktis (strain TAC 125)
Length = 749
Score = 71.3 bits (167), Expect = 4e-11
Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 11/161 (6%)
Query: 188 IPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVK 247
+ E+++ RVD R ++D D DDA++ R + + + V IADV+H+VK
Sbjct: 251 VTEQDKLARVDYRLFPFVTIDGEDAKDFDDAVYCERTEQGN----WRLLVAIADVSHYVK 306
Query: 248 PDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDEN 307
P+ LD EA R+T++Y + + M+P +S + ++ E+RL C + ++
Sbjct: 307 PNDVLDIEAQQRATSIYCPGQVVPMLPEALS-----NGLCSLNPHEDRLVLVCDMTISQD 361
Query: 308 ANVLSTKFHKSIIKSKAAMTYEEAQ--IAIDDSSRKDEIAK 346
V F + +I S A +TY +A IA SS ++A+
Sbjct: 362 GQVTQANFTEGLIHSHARLTYTQAHAVIAKPHSSSAKQLAE 402
>UniRef50_A6RWQ8 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 826
Score = 70.5 bits (165), Expect = 7e-11
Identities = 39/132 (29%), Positives = 72/132 (54%), Gaps = 21/132 (15%)
Query: 3 ILLQGHIGINRAIDGDIVAIEIFPKEEWRKPSNIVLEDKT---------EDPENIL--EE 51
+L+ G INR++ GD+V IE+ PK++W++PS ++E++T ++ E ++ +E
Sbjct: 302 LLVLGRENINRSVQGDVVVIEVLPKDQWKEPSTKIIEEETLNKDENADADEGEAVVTEKE 361
Query: 52 ETVLLDAAKPVDN---DDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRH-------L 101
L + K + ++ PT +VVG+++R WRQY G + S + +
Sbjct: 362 RRALQEEVKKTHSKGTENRPQPTARVVGVVKRNWRQYVGHVDESSVSQSVKQGRKQQTVF 421
Query: 102 FTPAEKRIPRVR 113
P +KRIP++R
Sbjct: 422 LIPMDKRIPKIR 433
Score = 54.4 bits (125), Expect = 5e-06
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 305 DENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXXXXXXXXD 364
D VL+ + KS+IKS+ A +YE+AQ +DD+S +DE+ + D
Sbjct: 452 DATFEVLTFAYTKSVIKSREAFSYEDAQKRVDDASAQDELTTNIRTLLMLSKKFKQKRMD 511
Query: 365 SGALLLASPEIRFQ 378
+GAL L+SPE++ +
Sbjct: 512 AGALSLSSPEVKVE 525
>UniRef50_Q2JH83 Cluster: Acetazolamide conferring resistance
protein Zam; n=2; Synechococcus|Rep: Acetazolamide
conferring resistance protein Zam - Synechococcus sp.
(strain JA-2-3B'a(2-13)) (Cyanobacteria
bacteriumYellowstone B-Prime)
Length = 766
Score = 69.7 bits (163), Expect = 1e-10
Identities = 66/277 (23%), Positives = 128/277 (46%), Gaps = 22/277 (7%)
Query: 63 DNDDEITPTGKVVGIIRRKWRQYCGILMPSKFHGATRHLFTPAEKRIPRVRIETRQSEI- 121
D + +P G+VV ++ R G L ++ P + R+ T S +
Sbjct: 122 DGNRRRSPEGEVVAVVERANSALVGRLKQTE----QGFRVVPLDDRLLFELALTEGSPVE 177
Query: 122 LASQRIL-VALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNC 180
LA R+ V ++ +P P G + ++ + + +++ ++D+P F VL
Sbjct: 178 LAEGRVAYVEVNRYPLGDLPPTGTIRKILGDGPEASIDADLVCCKYDLPQ-EFPAPVLEA 236
Query: 181 LPPNDWTIPEEERQKRVDLRDVCVCSVDP-----PGCTDIDDALHARRLGSSDGLATYEV 235
+ +++ R DLRD +++P P + + A+ +R + L +
Sbjct: 237 AAALPKKLSRSDQKGRRDLRDWFCITLEPLDLQHPHGLEPNVAVSLQRQENDHWL----L 292
Query: 236 GVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEER 295
G+HIADV H++ PD L++EA R+ TVYL + + P V + L + +ER
Sbjct: 293 GIHIADVAHWLDPDHPLEQEAQQRTATVYLDTMVLPLFPPEV------HNRLALLPQQER 346
Query: 296 LAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQ 332
LA+S + +D V + + + S+++S+A ++Y + Q
Sbjct: 347 LAYSLLVTLDPEGVVQNFEIYPSLVQSRAHLSYGQVQ 383
>UniRef50_UPI0000F1E528 Cluster: PREDICTED: similar to KIAA1769
protein; n=1; Danio rerio|Rep: PREDICTED: similar to
KIAA1769 protein - Danio rerio
Length = 1054
Score = 68.9 bits (161), Expect = 2e-10
Identities = 57/214 (26%), Positives = 103/214 (48%), Gaps = 22/214 (10%)
Query: 119 SEILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVL 178
+EI + ++V + W +PLG + ++ +P CD A +E++ D+ E
Sbjct: 47 AEIAENNMLVVKIIKWESTKPHPLGVVTKV-IPACD--AFHEIL----DI------ELGS 93
Query: 179 NCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVH 238
PP ++E +R DL D+ ++D D+DDA+ + S Y++G+H
Sbjct: 94 KGKPPPFQQQKDKEGVEREDLSDIFTFTIDSTSTQDLDDAISVTEMDDS-----YQIGIH 148
Query: 239 IADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAF 298
I DV ++ ++ D+ A T+Y ++ V S K Y+ + GEER A
Sbjct: 149 ITDVASYIIKNSEQDEFARMLGRTIYTPEK--GDVAFMFSREISKEYLSLID-GEERRAL 205
Query: 299 SCVWEMD-ENANVLSTKFHKSIIKSKAAMTYEEA 331
S + +D + + + ST+F ++I S M+Y+EA
Sbjct: 206 SLLVVVDKKTSQIRSTQFALTLINSDRRMSYKEA 239
>UniRef50_UPI00003824E3 Cluster: COG0557: Exoribonuclease R; n=1;
Magnetospirillum magnetotacticum MS-1|Rep: COG0557:
Exoribonuclease R - Magnetospirillum magnetotacticum
MS-1
Length = 197
Score = 68.9 bits (161), Expect = 2e-10
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSS-DGLATYEVGVH--IADVTHFVKPDTAL 252
RVDLRDV ++DPPG D+D ALH G + D A VH IADV FV P A+
Sbjct: 68 RVDLRDVPFLTIDPPGSMDLDQALHLEPAGGAPDDPAGAAFVVHYAIADVGAFVVPGGAI 127
Query: 253 DKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLS 312
D E R TT+Y D R + P +S + GE+R A + +D +L
Sbjct: 128 DAEVHERGTTLYAPDGRTPLHPAVLSEGAA-----SLLPGEDRPAAAWRVVLDARGEILD 182
Query: 313 TKFHKSIIKS 322
+ +++++S
Sbjct: 183 ARVRRAVVRS 192
>UniRef50_Q0JHU4 Cluster: Os01g0841800 protein; n=4; Oryza
sativa|Rep: Os01g0841800 protein - Oryza sativa subsp.
japonica (Rice)
Length = 575
Score = 68.9 bits (161), Expect = 2e-10
Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 10/169 (5%)
Query: 163 LLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHAR 222
L +DV R++E VL+ P+ ++ R DL + V ++D ++DDAL A
Sbjct: 370 LYRYDV-RIRYTEEVLSAAEELLVDCPDSDKDIRKDLSTLKVYAIDVDEADELDDALSAA 428
Query: 223 RLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTV 282
RL DG +V +H+AD T V+P + +D+EA R T+++L M P +++ +
Sbjct: 429 RL--PDG--RIKVWIHVADPTSLVQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAM 484
Query: 283 KYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEA 331
LQ G + + S + + D ++ SIIK +TYE A
Sbjct: 485 S---LQQGRGCKSVTVSVILQPD--GSIAEYSIENSIIKPTYMLTYESA 528
>UniRef50_A1SI92 Cluster: Ribonuclease II; n=1; Nocardioides sp.
JS614|Rep: Ribonuclease II - Nocardioides sp. (strain
BAA-499 / JS614)
Length = 467
Score = 68.5 bits (160), Expect = 3e-10
Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 10/149 (6%)
Query: 197 VDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEA 256
+D D+ ++DPPG D+D ALH R G Y V IADV FV P +D EA
Sbjct: 43 LDRTDLPFVTIDPPGSMDLDQALHLERDGEG-----YVVHYAIADVAAFVAPGDPIDVEA 97
Query: 257 ASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFH 316
R T+Y D +I + P +S QV R A +D + +
Sbjct: 98 HRRGETLYGADSKIPLHPPALSEDAASLLPDQV-----RPALLWTIRVDADGGRTAVHVE 152
Query: 317 KSIIKSKAAMTYEEAQIAIDDSSRKDEIA 345
++ ++S A ++YEEAQ AID + + +A
Sbjct: 153 RARVRSTARLSYEEAQRAIDAGTGPESLA 181
>UniRef50_Q1N135 Cluster: Exoribonuclease R; n=1; Oceanobacter sp.
RED65|Rep: Exoribonuclease R - Oceanobacter sp. RED65
Length = 658
Score = 67.7 bits (158), Expect = 5e-10
Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 10/135 (7%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
RVDL D ++D D+DDAL+A + + DG Y + V IAD + + P+T+LD+E
Sbjct: 221 RVDLSDHAFVTIDSEHTRDMDDALYAEK--TEDG---YRLHVAIADPSAWFGPNTSLDRE 275
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
A SR ++Y R + M+P +S +L+ GE+RLA CV + + + +F
Sbjct: 276 ARSRGNSLYFPGRSLAMLPQELSNGLCS--LLE---GEKRLALVCVLSIGTDGELNHYEF 330
Query: 316 HKSIIKSKAAMTYEE 330
++ + S A ++Y +
Sbjct: 331 KEATVTSHAKLSYNQ 345
>UniRef50_Q1D4N8 Cluster: Ribonuclease R; n=3;
Deltaproteobacteria|Rep: Ribonuclease R - Myxococcus
xanthus (strain DK 1622)
Length = 1182
Score = 67.7 bits (158), Expect = 5e-10
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 12/152 (7%)
Query: 187 TIPEEE--RQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTH 244
T+ EEE + R DLR + + ++D D DDA+ +DG + + V IADVTH
Sbjct: 335 TVTEEEVRGEHRRDLRAIPLITIDGEDARDFDDAVCVE--DRADG---WRLVVAIADVTH 389
Query: 245 FVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEM 304
+V +AL+ EA R+T+VYL DR + M+P +S I + E+RL
Sbjct: 390 YVWEGSALNAEALRRATSVYLPDRVLPMLPERLS-----NGICSLRPDEDRLCMVADMTF 444
Query: 305 DENANVLSTKFHKSIIKSKAAMTYEEAQIAID 336
D + S + ++++S A TY E Q +D
Sbjct: 445 DRRGHRRSYDLYPAVMRSVARCTYNEVQDVLD 476
>UniRef50_Q46363 Cluster: Acetazolamide conferring resistance
protein zam; n=5; Chroococcales|Rep: Acetazolamide
conferring resistance protein zam - Synechocystis sp.
(strain PCC 6803)
Length = 782
Score = 67.7 bits (158), Expect = 5e-10
Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 15/213 (7%)
Query: 129 VALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAV--LNCLPPNDW 186
V++ +P PLG + ++ + A+ +++ +HD+P EA+ L LP
Sbjct: 179 VSVLRYPIAQHPPLGEVTKVLGSDAEAAADTDIVSCKHDLPLGWTPEAIEALQSLPK--- 235
Query: 187 TIPEEERQKR--VDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTH 244
I E +KR + + V D P + A L S ++VG+HI D+ H
Sbjct: 236 VIEPGELKKRTWITAKLQLVTFGDGPRGETLPWQEVALSLESQAN--QWQVGIHITDIAH 293
Query: 245 FVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEM 304
++ D+ LD+ A R TTVYL ++ + P + + E+RLA S +
Sbjct: 294 YIAEDSLLDQLARKRGTTVYLEEQICPLFPEGLIGR------CSLIPDEDRLALSFFLTV 347
Query: 305 DENANVLSTKFHKSIIKSKAAMTYEEAQIAIDD 337
D+ V ++H S++K + + E Q A+ D
Sbjct: 348 DDRGEVTGFEYHSSVVKVDHQLDFSEVQTALAD 380
>UniRef50_A7RTS2 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 2837
Score = 66.9 bits (156), Expect = 9e-10
Identities = 51/213 (23%), Positives = 101/213 (47%), Gaps = 20/213 (9%)
Query: 128 LVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWT 187
LV + W + RYPLG + + F + V ++ + N DWT
Sbjct: 1523 LVQVMEWGASFRYPLGIVRQCFQEVTSLETALPVFAADNGLQLVPARMGGFN----EDWT 1578
Query: 188 IPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVK 247
IP+ E R+ + ++D ++DDAL + ++G+ + VGVH+ADV++F+
Sbjct: 1579 IPDTEWGSRLHFSEAL--TIDCGKTMELDDALSVK--AGANGVVS--VGVHVADVSYFIS 1632
Query: 248 PDTALDKEAASRSTTVYLVDR---RIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEM 304
D++ D+ A ++ T+ Y D ++M+P + + + G+ RLA S ++
Sbjct: 1633 KDSSFDQAAFAQGTSAYPTDGSGIAVNMLPEQLR------RLCSLLPGKHRLAISVIFTF 1686
Query: 305 DENANVLS-TKFHKSIIKSKAAMTYEEAQIAID 336
+ L + +SI+ SK ++T+++ ++
Sbjct: 1687 NTQGRSLRLPEVRRSIVSSKYSLTFDQCDAVLN 1719
>UniRef50_Q8YXH3 Cluster: Zam protein; n=6; Cyanobacteria|Rep: Zam
protein - Anabaena sp. (strain PCC 7120)
Length = 783
Score = 66.5 bits (155), Expect = 1e-09
Identities = 47/205 (22%), Positives = 100/205 (48%), Gaps = 12/205 (5%)
Query: 141 PLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLR 200
P+G +V++ + A+ +++ +HD+ F E++L+ + + + + ++DLR
Sbjct: 191 PVGRVVQILGSDAEAAADIDLVTCKHDLSR-NFPESILDAAAKLPKRLLKADLKNKLDLR 249
Query: 201 DVCVCSVDPPGCTDIDDALHARRLGSSDGLA-TYEVGVHIADVTHFVKPDTALDKEAASR 259
++ ++ + D + + +A +++G HIADV+H+V+PD LD+EA R
Sbjct: 250 NLFTFTITG---INSDTKVIENAISLEKTIAGNWQLGFHIADVSHYVQPDEPLDREAIKR 306
Query: 260 STTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDEN-ANVLSTKFHKS 318
+VYL D + M+P V+ G +RLA S + + VL + S
Sbjct: 307 GRSVYLGDLVLSMLPDTVADRA------SFVTGSDRLALSFLITISSQLGEVLEWEIQPS 360
Query: 319 IIKSKAAMTYEEAQIAIDDSSRKDE 343
+I ++ ++A+ + ++ K +
Sbjct: 361 VINVDNNVSKQQAEAILQGAATKKD 385
>UniRef50_A5K6D1 Cluster: Putative uncharacterized protein; n=1;
Plasmodium vivax|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 1762
Score = 65.7 bits (153), Expect = 2e-09
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 194 QKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLAT---YEVGVHIADVTHFVKPDT 250
+ R + ++ V ++DPP D+DDAL +GS A Y++GVHI+DV+ FV PD+
Sbjct: 745 KNREIITNLDVFTIDPPSAKDLDDALSIEFVGSDTNAANEFEYKIGVHISDVSFFVTPDS 804
Query: 251 ALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENAN 309
D+ A+ T+Y+ I M+P +S I ++ E+L+FS + + AN
Sbjct: 805 FYDRVASKVCNTIYMDLMVIHMLPSILSEE-----ICSLNTQGEKLSFSVFFRLSSRAN 858
>UniRef50_Q1AVL2 Cluster: Exoribonuclease II; n=1; Rubrobacter
xylanophilus DSM 9941|Rep: Exoribonuclease II -
Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 535
Score = 65.3 bits (152), Expect = 3e-09
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 10/135 (7%)
Query: 195 KRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDK 254
+R DLR + ++D D DDA+ R DG Y + VHIADVTH+V P ALD+
Sbjct: 101 ERRDLRRLPTVTIDGEDAKDFDDAISILR---EDG--GYRLWVHIADVTHYVDPGGALDR 155
Query: 255 EAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTK 314
+A R +VYL M+P +S + + +R A + + V K
Sbjct: 156 QALYRGNSVYLPGTVAPMLPARLSAD-----VCSLRPHADRAAVTVEISVSGEGEVRGWK 210
Query: 315 FHKSIIKSKAAMTYE 329
++S+I S A +TYE
Sbjct: 211 VYRSLICSDARLTYE 225
>UniRef50_A6DBI2 Cluster: RNB-like protein; n=1; Caminibacter
mediatlanticus TB-2|Rep: RNB-like protein - Caminibacter
mediatlanticus TB-2
Length = 650
Score = 65.3 bits (152), Expect = 3e-09
Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 13/152 (8%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
RVDL ++ C++DPP D DDA++ + + E+ V IADV+ +V + +DKE
Sbjct: 217 RVDLTNLSFCTIDPPTAKDHDDAIYFDKEKN-------ELYVAIADVSEYVYLNGNIDKE 269
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
A R ++Y + I M+P +S I + E+RLAF D+N V+ +
Sbjct: 270 AKERGFSIYFPHKAIPMLPRELSEN-----ICSLKENEDRLAFVFKISFDDNNEVIKEEL 324
Query: 316 HKSIIKSKAAMTYEEAQIAIDDSSRK-DEIAK 346
++II S +Y+ ++ DEI K
Sbjct: 325 FEAIIHSHRKYSYDRVDEFLEGKFENIDEIDK 356
>UniRef50_Q29XV9 Cluster: Possible RNAase; n=17; Campylobacter|Rep:
Possible RNAase - Campylobacter jejuni
Length = 515
Score = 64.9 bits (151), Expect = 3e-09
Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 13/190 (6%)
Query: 154 DKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCT 213
D ++ +E I L + FS+A + N ++ + R+DLR + C++DP
Sbjct: 44 DDESVDEKISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDLRALPFCTIDPIHAK 103
Query: 214 DIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMV 273
D DDA++ + E+ V IADV+ +V +A+DKEA +R ++Y I M+
Sbjct: 104 DFDDAIYF-------DIQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIYFPHIAIPML 156
Query: 274 PGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEA-Q 332
P +S I + +RLA+ +D V+ + + II SK Y+E +
Sbjct: 157 PRPLSEN-----ICSLKPHLDRLAYCFKIALDHENKVIKEELFEGIINSKRRFNYDEVDE 211
Query: 333 IAIDDSSRKD 342
I I K+
Sbjct: 212 ILIQKPDLKE 221
>UniRef50_Q9RYD0 Cluster: Ribonuclease II family protein; n=1;
Deinococcus radiodurans|Rep: Ribonuclease II family
protein - Deinococcus radiodurans
Length = 461
Score = 64.5 bits (150), Expect = 5e-09
Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 17/174 (9%)
Query: 165 EHDVPHARFSEAVLNC--LPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHAR 222
E P+A A LN LP D+ P EER +DL + ++D G D DDA+
Sbjct: 52 EARTPYADRLRAALNAVELPVPDFD-PAEER---LDLTHLPTFAIDDEGNQDPDDAVGVE 107
Query: 223 RLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTV 282
LG GL + VH+ADV V PD+ LD EA +R T+YL DR I M+P + V
Sbjct: 108 DLGG--GLT--RLWVHVADVAALVAPDSPLDLEARARGATLYLPDRTIGMLPDEL-VAKA 162
Query: 283 KYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQIAID 336
+ +VS A S ++D + N + + +K + + Y+EAQ ++
Sbjct: 163 GLGLHEVS-----PALSICLDLDPDGNAEAVDVLLTRVKVQ-RLAYQEAQARLE 210
>UniRef50_Q2S7B5 Cluster: Exoribonuclease R; n=1; Hahella chejuensis
KCTC 2396|Rep: Exoribonuclease R - Hahella chejuensis
(strain KCTC 2396)
Length = 657
Score = 64.1 bits (149), Expect = 6e-09
Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 9/144 (6%)
Query: 192 ERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTA 251
E +KR DLR+ ++D D+DDAL A +G +E+ IAD + +
Sbjct: 190 ELEKRKDLRETPFVTIDAASTQDMDDALFAT--ARPEG--GWELLAAIADPSTLIPEGGD 245
Query: 252 LDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVL 311
+DK A ++ Y DR + M+P ++ + + GE+RLA C ++D + +
Sbjct: 246 IDKYAQRLGSSFYFADRTLPMLPAKLA-----NHFCSLKSGEDRLALVCTMQIDADGAIS 300
Query: 312 STKFHKSIIKSKAAMTYEEAQIAI 335
S ++ I+ A +TYEE A+
Sbjct: 301 SYSIEEAAIRCAANLTYEEVATAL 324
>UniRef50_Q2RPE7 Cluster: Ribonuclease R; n=7;
Alphaproteobacteria|Rep: Ribonuclease R - Rhodospirillum
rubrum (strain ATCC 11170 / NCIB 8255)
Length = 842
Score = 64.1 bits (149), Expect = 6e-09
Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R DLR V + ++D D DDA+ A + V IADV H+V+ ALDK
Sbjct: 306 REDLRAVPLVTIDGEDARDFDDAVFAEPDDDPANPGGWRALVAIADVAHYVRIGAALDKA 365
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
A R +VY DR + M+P +S + E+R + D N L +F
Sbjct: 366 ARERGNSVYFPDRVVPMLPEALSNGW-----CSLRPNEDRGCLAVWMIFDAEGNKLRHRF 420
Query: 316 HKSIIKSKAAMTYEEAQIAID 336
+ +++S A +TY + Q A D
Sbjct: 421 LRGLMRSAARLTYTQVQAARD 441
>UniRef50_Q7REV4 Cluster: Rhoptry protein; n=4; Plasmodium
(Vinckeia)|Rep: Rhoptry protein - Plasmodium yoelii
yoelii
Length = 1559
Score = 63.7 bits (148), Expect = 8e-09
Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 17/146 (11%)
Query: 204 VCSVDPPGCTDIDDALHARRLGS---SDGLATYEVGVHIADVTHFVKPDTALDKEAASRS 260
V ++DPP D+DDAL + + S+ Y++GVHI+DV+ FV P++ DK AA+
Sbjct: 616 VFTIDPPNAKDLDDALSIQFIPLDEFSNIKYKYKIGVHISDVSFFVSPNSYYDKIAATLC 675
Query: 261 TTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMD---------ENANVL 311
T+Y+ M+P +S + ++ +L FS + +D + N+
Sbjct: 676 NTLYMDLMVFHMLPPIISED-----VCSLNTSGNKLCFSVFFYLDNLSNPYEYIKEKNIE 730
Query: 312 STKFHKSIIKSKAAMTYEEAQIAIDD 337
+ + KSIIK+K + Y+ + IDD
Sbjct: 731 NVEMKKSIIKNKYKLCYDSVENFIDD 756
>UniRef50_Q7R054 Cluster: GLP_56_56502_53413; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_56_56502_53413 - Giardia lamblia
ATCC 50803
Length = 1029
Score = 63.7 bits (148), Expect = 8e-09
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 233 YEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCG 292
YEVG+HIAD T+++ LD+ A +++YL DR M+P S I ++
Sbjct: 384 YEVGIHIADATYYLDQSPWLDEMAQKTMSSIYLSDRVCPMLPPLFS-----NIICSLNPA 438
Query: 293 EERLAFSCVWEMDENANVLSTK--FHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKS 347
R+AFS V ++D + +L + F KSII S A + Y AQ I+ DEI+K+
Sbjct: 439 VPRMAFSIVVQLDVDGRLLPQEVWFGKSIIFSYARLDYSAAQRIINKDFTPDEISKT 495
>UniRef50_Q6SG71 Cluster: RNB-like family protein; n=4;
Bacteria|Rep: RNB-like family protein - uncultured
bacterium 562
Length = 495
Score = 63.3 bits (147), Expect = 1e-08
Identities = 46/144 (31%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R DL V ++D D DDA+H + SS + + V IADV VKP TALD E
Sbjct: 40 RKDLTKVPFITIDGADAKDFDDAVHCVKNKSS-----FTLSVAIADVAELVKPGTALDNE 94
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
A R T++Y + I M+P +S + + E R C + ++ S F
Sbjct: 95 AIERGTSIYFPSKVIPMLPEKISNN-----LCSLVPNEIRNVLICEIVFSNSGDLQSYNF 149
Query: 316 HKSIIKSKAAMTYEEAQIAIDDSS 339
++ IKS MTY E + +S
Sbjct: 150 LEARIKSHKRMTYIEVDKYLKSNS 173
>UniRef50_Q4XZG1 Cluster: Putative uncharacterized protein; n=1;
Plasmodium chabaudi|Rep: Putative uncharacterized
protein - Plasmodium chabaudi
Length = 1258
Score = 63.3 bits (147), Expect = 1e-08
Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 17/146 (11%)
Query: 204 VCSVDPPGCTDIDDALHARRLGS---SDGLATYEVGVHIADVTHFVKPDTALDKEAASRS 260
V ++DPP D+DDAL + + S+ Y++GVHI+DV+ F+ PD+ DK AA++
Sbjct: 412 VFTIDPPTAKDLDDALSIQFIPPDQFSNIKYKYKIGVHISDVSFFIPPDSYYDKMAATQC 471
Query: 261 TTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENAN---VLSTK--- 314
T+Y+ M+P +S I ++ +L+FS + +D+ +N ++ K
Sbjct: 472 NTLYMDLMVFHMLPSVISEN-----ICSLNTSGNKLSFSVFFNIDDVSNPYEIIKEKTSD 526
Query: 315 ---FHKSIIKSKAAMTYEEAQIAIDD 337
K IIKS+ + Y+ + ID+
Sbjct: 527 NLEMKKGIIKSRYKLCYDIVEDYIDE 552
>UniRef50_Q8NNG9 Cluster: Exoribonucleases; n=5;
Corynebacterium|Rep: Exoribonucleases - Corynebacterium
glutamicum (Brevibacterium flavum)
Length = 422
Score = 62.9 bits (146), Expect = 1e-08
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 206 SVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYL 265
++DP G D+D A+ + S + V IADV FV+P + L+K + R T+YL
Sbjct: 5 TIDPVGSRDLDQAVLIEEIDSG-----FRVHYAIADVAAFVEPGSELEKISLHRGQTIYL 59
Query: 266 VDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAA 325
D + P +S +L+ G+ R A ++DE V +TK + ++KS+A
Sbjct: 60 PDSPARLHPEELSEDAAS--LLE---GQTRPAVVWSIDLDERGEVTATKVRRGLVKSRAR 114
Query: 326 MTYEEAQI 333
+ Y++AQI
Sbjct: 115 LDYDQAQI 122
>UniRef50_A6DIQ3 Cluster: Exoribonuclease, VacB/RNB family protein;
n=1; Lentisphaera araneosa HTCC2155|Rep:
Exoribonuclease, VacB/RNB family protein - Lentisphaera
araneosa HTCC2155
Length = 668
Score = 62.9 bits (146), Expect = 1e-08
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 11/181 (6%)
Query: 196 RVDLRDVCVC-SVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDK 254
R DL + C S+D +D+DD L L + +++G+HIADV+ ++ + LD
Sbjct: 265 RNDLGEDFYCFSIDDESTSDVDDVLSVEYLEND----LFKIGIHIADVSAYIAKASTLDL 320
Query: 255 EAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTK 314
EA R+T++YL ++M P ++ T K +L G + A S + + + ST
Sbjct: 321 EAEHRATSIYLPTGTVNMFPAELA--THKASLLP---GSPKPALSYYATLTSDGELRSTH 375
Query: 315 FHKSIIKSKAAMTYEEAQIAID-DSSRKDEIAKSXXXXXXXXXXXXXXXXDSGALLLASP 373
+S+I+ ++Y ++ D K+++ K + GA+ P
Sbjct: 376 IERSLIQVSEKLSYRYCDGVLEGDEEAKEDLKKDLDILANLADELILKRQEKGAITFNRP 435
Query: 374 E 374
E
Sbjct: 436 E 436
>UniRef50_A5E347 Cluster: Protein SSD1; n=1; Lodderomyces
elongisporus NRRL YB-4239|Rep: Protein SSD1 -
Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 1404
Score = 62.9 bits (146), Expect = 1e-08
Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 12/141 (8%)
Query: 191 EERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDT 250
E Q RV+ + + + G +D +LH +R+ ++ E+G H+ D+ ++VKP +
Sbjct: 779 EASQSRVEYSNDYIIAFSQTG-DFVDHSLHVKRISNTK----IELGFHVCDIAYYVKPGS 833
Query: 251 ALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMD-ENAN 309
LD+++ RS++V+L R + + P V+ + E+ LA S V+E+D N
Sbjct: 834 FLDRKSKKRSSSVFLPQRAVHLYPKQVNEA------ISFRENEKNLAISVVFEIDTTNFE 887
Query: 310 VLSTKFHKSIIKSKAAMTYEE 330
V H+S+I K ++Y++
Sbjct: 888 VEDLFIHESVIVPKQIVSYQD 908
>UniRef50_A4CUF3 Cluster: Exoribonuclease II; n=4;
Synechococcus|Rep: Exoribonuclease II - Synechococcus
sp. (strain WH7805)
Length = 651
Score = 62.1 bits (144), Expect = 2e-08
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 9/142 (6%)
Query: 195 KRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDK 254
+R+DL ++D DIDDAL RL + D L + +HIAD + + LD
Sbjct: 246 ERIDLTHQTCVTIDDAETRDIDDALGLERL-ADDQL---RIWIHIADPGRLITTGSPLDL 301
Query: 255 EAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTK 314
EA R +++YL + M P N+S + + G+ A+S ++D +V ++
Sbjct: 302 EARRRGSSLYLARGILPMFPSNLSTE-----VFSLKAGQRNAAWSTWVDLDHTGDVKTSG 356
Query: 315 FHKSIIKSKAAMTYEEAQIAID 336
+S + + +TYE+A ID
Sbjct: 357 MCRSWVTPRYRLTYEDADELID 378
>UniRef50_A6F5G1 Cluster: Exoribonuclease R; n=1; Marinobacter
algicola DG893|Rep: Exoribonuclease R - Marinobacter
algicola DG893
Length = 662
Score = 61.7 bits (143), Expect = 3e-08
Identities = 42/163 (25%), Positives = 85/163 (52%), Gaps = 12/163 (7%)
Query: 185 DWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTH 244
D + E + + R D D ++D PG D+DDAL A + ++ G +++ + IAD T
Sbjct: 186 DESTVEAKSEGRDDRTDQPYVTIDSPGTQDMDDALLA--VPNATG---WKLSIAIADPTA 240
Query: 245 FVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEM 304
++P + ++EA R+T +Y + M+P +S + + +RLA C ++
Sbjct: 241 VIEPGSPAEQEAFRRATAIYFPGEPLPMLPDTLSTR-----LCSLMPDVKRLALVCDLQV 295
Query: 305 DENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKS 347
+ + ++ +FH+++I+S ++YE I+ R+D+ K+
Sbjct: 296 NNDGSLGDYQFHQAVIRSHGKLSYELVSNLIE--GREDDEIKA 336
>UniRef50_Q4T9U5 Cluster: Chromosome undetermined SCAF7493, whole
genome shotgun sequence; n=2; Tetraodontidae|Rep:
Chromosome undetermined SCAF7493, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 2483
Score = 60.9 bits (141), Expect = 6e-08
Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 24/216 (11%)
Query: 120 EILASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLN 179
E+ + +V + W ++ PLG+ + + + ++ E ++P + + E L
Sbjct: 1377 ELRLNSVFVVQVIGWKQHCYQPLGNTIDIIPVGKSLNDGLRILNKEFNIPTSSYEELFLE 1436
Query: 180 CLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHI 239
+E+ R DL D+ ++DP D+DDA+ R L S YE+G+HI
Sbjct: 1437 ----------DEDCCCREDLHDIFTFTIDPKHAKDLDDAISVRELTDS-----YELGIHI 1481
Query: 240 ADVTHFVKPDTALDKEAASRSTTVY-LVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAF 298
DV V+ LDK A R +T Y + + M P V + G+ R
Sbjct: 1482 TDVVSLVRQGDQLDKMAQHRGSTFYGALGKNTHMFPEEV------INRCSLLSGQVRSVV 1535
Query: 299 SCVWEMDENAN--VLSTKFHKSIIKSKAAMTYEEAQ 332
S + +++ + V KF S I+S +YE+A+
Sbjct: 1536 SLMLNVNKITHEIVEKPKFQLSRIRSDRQFSYEDAE 1571
>UniRef50_Q7VIS0 Cluster: Putative uncharacterized protein; n=1;
Helicobacter hepaticus|Rep: Putative uncharacterized
protein - Helicobacter hepaticus
Length = 614
Score = 60.9 bits (141), Expect = 6e-08
Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 17/192 (8%)
Query: 143 GHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDV 202
G++V + D + +++L ++ + FS V + +E RVDL +
Sbjct: 130 GNIVEVLGVLGDAQIDEKIVLSSYNRVN-EFSSNVKEFAQSFGDEVCKEMYPHRVDLSHL 188
Query: 203 CVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTT 262
C +DP D DDA++ T + V IADV+ +V ++ LDKEA R +
Sbjct: 189 PFCVIDPKDARDHDDAIYFES-------KTKTLYVAIADVSEYVSCESVLDKEARQRGFS 241
Query: 263 VYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWE--MDENANVLSTKFHKSII 320
+Y + + M+P +S S E ++ + VW+ +D+NA V ++ ++ I
Sbjct: 242 IYFPHKVVPMLPFELSSGI-------CSLKENKVRLAMVWKITLDKNAQVQKSELLEAFI 294
Query: 321 KSKAAMTYEEAQ 332
+S A ++YE +
Sbjct: 295 QSHANVSYENIE 306
>UniRef50_A4BI97 Cluster: Exoribonuclease R; n=1; Reinekea sp.
MED297|Rep: Exoribonuclease R - Reinekea sp. MED297
Length = 647
Score = 60.9 bits (141), Expect = 6e-08
Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 12/170 (7%)
Query: 161 VILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALH 220
V L E +P A FS+A L PE + R DL D+ ++D D+DDAL
Sbjct: 174 VALAEQGIPEA-FSDAELKQAKALAEAGPETD-PSRQDLTDLPFVTIDAASTKDMDDALF 231
Query: 221 ARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVT 280
AR + +G +++ V IAD + ++ D+ LDK A R TT YL + M+P ++ +
Sbjct: 232 ARP--TENG---WQLSVAIADASAYIPLDSELDKAAQKRLTTTYLPGLTLPMLPEILADS 286
Query: 281 TVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEE 330
+ + E R A ++D + NV + + ++S+A + Y++
Sbjct: 287 A-----MSLVPDETRPAMIFQMQIDRDGNVSDFEIFPATVRSQAKLAYDD 331
>UniRef50_A1U792 Cluster: VacB and RNase II family 3'-5'
exoribonuclease; n=2; Marinobacter|Rep: VacB and RNase
II family 3'-5' exoribonuclease - Marinobacter aquaeolei
(strain ATCC 700491 / DSM 11845 / VT8)(Marinobacter
hydrocarbonoclasticus (strain DSM 11845))
Length = 660
Score = 60.9 bits (141), Expect = 6e-08
Identities = 41/155 (26%), Positives = 81/155 (52%), Gaps = 12/155 (7%)
Query: 193 RQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTAL 252
R+ R D + ++D PG D+DDAL A + + + + IAD T ++P +
Sbjct: 194 REGREDRTEQPYVTIDSPGTQDMDDALMA-----TPNATGWTLSIAIADPTAMIEPGSPA 248
Query: 253 DKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLS 312
++EA +R+T +Y + M+P +S T + + +V RLA C +++ + ++
Sbjct: 249 EEEAFNRATAIYFPGEPLPMLPDAIS-TRLCSLMPEV----PRLALVCDLQVNNDGSLGD 303
Query: 313 TKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKS 347
FH+++I+S+ ++YE I+ R+D+ K+
Sbjct: 304 YSFHQAVIRSQGKLSYELVSHLIE--GREDDEIKA 336
>UniRef50_P75529 Cluster: Ribonuclease R; n=5; Mycoplasma|Rep:
Ribonuclease R - Mycoplasma pneumoniae
Length = 726
Score = 60.5 bits (140), Expect = 7e-08
Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 12/158 (7%)
Query: 190 EEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPD 249
E+ + R DL ++ ++DP D+DDA++ +R + G Y V IADV ++V+ +
Sbjct: 258 EQSKPYRKDLTELAFVTIDPATSKDLDDAIYVKR--TDKGFVLY---VAIADVAYYVQRN 312
Query: 250 TALDKEAASRSTTVYLVDRR-IDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENA 308
+ LD EA +++++YL + M+P +S + ++ E+R C D A
Sbjct: 313 SELDIEARHKTSSIYLPGYYVVPMLPERLS-----NELCSLNPNEKRYVVVCELNFDHEA 367
Query: 309 NVLSTKFHKSIIKSKAAMTYEEAQIAIDDS-SRKDEIA 345
+ ++ + + I S+ Y E ++DS + KDE A
Sbjct: 368 RLNFSEVYPATIVSQRRFAYSEVNDWLEDSDALKDESA 405
>UniRef50_Q9KLE1 Cluster: Exoribonuclease 2; n=37; Bacteria|Rep:
Exoribonuclease 2 - Vibrio cholerae
Length = 678
Score = 60.5 bits (140), Expect = 7e-08
Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 11/125 (8%)
Query: 154 DKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCT 213
DK A V L E+D+P++ + +DW + ++ R DL + ++D
Sbjct: 158 DKIAPWWVTLAENDLPNSEPAGI-------DDWQLKDDADLVREDLTALPFVTIDGESTK 210
Query: 214 DIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMV 273
D+DDAL+A++L + D + + + IAD T ++ P+ +DK A R T+YL R I M+
Sbjct: 211 DMDDALYAQQLPNGD----FALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPML 266
Query: 274 PGNVS 278
P +++
Sbjct: 267 PRDLA 271
>UniRef50_A6F7X7 Cluster: Exoribonuclease II; n=1; Moritella sp.
PE36|Rep: Exoribonuclease II - Moritella sp. PE36
Length = 647
Score = 60.1 bits (139), Expect = 1e-07
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 10/145 (6%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R+DL D ++D D+DDAL + +++G +V V IAD T ++ D+ L+K
Sbjct: 188 RIDLTDKPFFTIDSASTQDMDDALLIEK--TAEG--NLKVTVAIADPTSYIPADSELNKI 243
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLST-K 314
AA R+ TVYL R I M+P +S + + + GE+R C + + E+ + +
Sbjct: 244 AAERAFTVYLPGRNIPMMPRELSDS-----VCSLVAGEKRPTLCCTYTIQEDGALAEEFE 298
Query: 315 FHKSIIKSKAAMTYEEAQIAIDDSS 339
F + I S+ ++Y + I++ S
Sbjct: 299 FFTAWITSQHKLSYTQVSNWIEEVS 323
>UniRef50_P73177 Cluster: Uncharacterized ribonuclease sll1290;
n=12; Cyanobacteria|Rep: Uncharacterized ribonuclease
sll1290 - Synechocystis sp. (strain PCC 6803)
Length = 666
Score = 59.7 bits (138), Expect = 1e-07
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 9/142 (6%)
Query: 189 PEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKP 248
P + Q+R DL + ++D ++IDD L L +DG + + +H+AD T + P
Sbjct: 256 PPDPDQERFDLTTLKTYTIDDESTSEIDDGLSVETL--ADG--GHRLWIHVADPTRLLSP 311
Query: 249 DTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENA 308
+ LD EA RST++YL I M P ++ T +LQ G+ +A S +DE
Sbjct: 312 NDELDLEARKRSTSLYLPTGMISMFPPELA--TGPMSLLQ---GQRCVALSFGVTLDEVG 366
Query: 309 NVLSTKFHKSIIKSKAAMTYEE 330
V S +K +TYE+
Sbjct: 367 AVRDFTIAPSWVKPTYRLTYED 388
>UniRef50_A2QYG4 Cluster: Contig An12c0030, complete genome; n=7;
Trichocomaceae|Rep: Contig An12c0030, complete genome -
Aspergillus niger
Length = 1045
Score = 59.3 bits (137), Expect = 2e-07
Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 11/160 (6%)
Query: 184 NDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRL-GSSDGLATYEVGVHIADV 242
N +P++ + R D D+ V VD +IDD + R+ G +D T+ + VH+A+
Sbjct: 533 NSQELPDKMKDVRTDWGDLPVYCVDDATAQEIDDGVSLERIPGMND---TFWIRVHVANP 589
Query: 243 THFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVW 302
T F+ + + + AASR T+Y +R M+P ++ T K++ L + G L FS
Sbjct: 590 TAFLDSEGKVMQYAASRLQTMYAPERTYPMIPSSL---TQKHFSL--APGRPTLTFSA-- 642
Query: 303 EMDENANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKD 342
+M+ VL T ++++ +T+ + + + S K+
Sbjct: 643 KMNLQGEVLDTNITNGVVRNVIYITHGKLRSLFEPSPEKE 682
>UniRef50_P24276 Cluster: Protein SSD1; n=6; Saccharomycetales|Rep:
Protein SSD1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1250
Score = 59.3 bits (137), Expect = 2e-07
Identities = 56/244 (22%), Positives = 113/244 (46%), Gaps = 26/244 (10%)
Query: 102 FTPAEKRIPRVRIETR-------QSEILASQRILVA-LDSWPRNSRYPLGHLVRLFVPTC 153
F P +K++P + I T ++ S+++ VA + WP S +P G LV
Sbjct: 584 FKPTDKKVPLIAIPTELAPKDFVENADKYSEKLFVASIKRWPITSLHPFGILVSELGDIH 643
Query: 154 DKDAENEVILLEHD-VPHARFSEAVLNCLPPNDWTIPE-----EERQKRVDLRDVCVCSV 207
D D E + IL +++ + + + P+ +P E R+ D + + ++
Sbjct: 644 DPDTEIDSILRDNNFLSNEYLDQKNPQKEKPSFQPLPLTAESLEYRRNFTDTNEYNIFAI 703
Query: 208 DPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVD 267
G + ALH R ++G T E+G H+ DVT ++ +++D+ A RS+ V++
Sbjct: 704 SELGWVS-EFALHVR----NNGNGTLELGCHVVDVTSHIEEGSSVDRRARKRSSAVFMPQ 758
Query: 268 RRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENA-NVLSTKFHKSIIKSKAAM 326
+ ++++P + + L ++ G+E S V+ +D + + ST +S I +
Sbjct: 759 KLVNLLPQSFNDE------LSLAPGKESATLSVVYTLDSSTLRIKSTWVGESTISPSNIL 812
Query: 327 TYEE 330
+ E+
Sbjct: 813 SLEQ 816
>UniRef50_Q3AVJ3 Cluster: Exoribonuclease II; n=3;
Synechococcus|Rep: Exoribonuclease II - Synechococcus
sp. (strain CC9902)
Length = 674
Score = 58.4 bits (135), Expect = 3e-07
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 10/155 (6%)
Query: 189 PEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKP 248
P+ R+DL + ++D G +IDD + L +G + VHIAD + P
Sbjct: 271 PQPGDDDRLDLCHLATYTLDDAGTREIDDGIS---LDDQNGEVW--IWVHIADPARLIPP 325
Query: 249 DTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENA 308
+ LD+EA R+T++YL D + M+P +++ L + GE A S +D
Sbjct: 326 GSPLDQEARRRATSLYLADGVLPMLPLSLAAGP-----LSLRAGERTAAVSVAVRLDSAG 380
Query: 309 NVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDE 343
+ + +S ++ + +TY + I+ + DE
Sbjct: 381 AIADRRIARSWVRPRYGLTYADGDELIELAPPGDE 415
>UniRef50_Q7VBX3 Cluster: Exoribonuclease R/ribonuclease II; n=1;
Prochlorococcus marinus|Rep: Exoribonuclease
R/ribonuclease II - Prochlorococcus marinus
Length = 432
Score = 58.0 bits (134), Expect = 4e-07
Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 10/155 (6%)
Query: 188 IPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVK 247
I ++ K D+ ++ ++D P +IDDA+ + G L +HIA+ +
Sbjct: 24 ISNKDHHKYKDITNLKTYTIDDPNTIEIDDAISLEKRGDKCFL-----WIHIANPAETIS 78
Query: 248 PDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDEN 307
++AL +EA RS+T+YL + M P + K ++Q G+E LA S E+ +
Sbjct: 79 LNSALAQEAMIRSSTIYLAESISYMFP--KELIREKISLVQ---GKESLAISLKLELSDK 133
Query: 308 ANVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKD 342
++ S ++ IK ++YEEA +D +++
Sbjct: 134 GDINSFSIERTKIKPDYKLSYEEANEILDYQPKEE 168
>UniRef50_Q7U6W2 Cluster: Probable ribonuclease II; n=3;
Cyanobacteria|Rep: Probable ribonuclease II -
Synechococcus sp. (strain WH8102)
Length = 682
Score = 57.6 bits (133), Expect = 5e-07
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 10/141 (7%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
RVDL V ++D +IDD L L DG + +HIAD ++PD+ LD+E
Sbjct: 286 RVDLTAQRVYTLDDSSTKEIDDGL---ALEPGDGGPW--IWIHIADPARLIEPDSPLDRE 340
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
A R+T++YL + + M+P ++ I + G+ A S +D+ V+++
Sbjct: 341 ARRRATSLYLANGVLPMLPLKLATE-----IFSLRAGQRCPALSVGVLLDDEGAVVASSC 395
Query: 316 HKSIIKSKAAMTYEEAQIAID 336
+S ++ + +TYE+ I+
Sbjct: 396 QRSWVQPRYRLTYEDGDELIE 416
>UniRef50_A5GLA4 Cluster: Exoribonuclease R/ribonuclease II; n=2;
Synechococcus|Rep: Exoribonuclease R/ribonuclease II -
Synechococcus sp. (strain WH7803)
Length = 649
Score = 57.6 bits (133), Expect = 5e-07
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 9/142 (6%)
Query: 195 KRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDK 254
+R DL + ++D DIDDAL RL ++D L + +HIAD + + + LD
Sbjct: 244 ERRDLTHLACVTIDDAETKDIDDALGLERL-ANDHL---RIWIHIADPSRLITAGSPLDL 299
Query: 255 EAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTK 314
EA R +++YL + M P +S + + G+ A+S ++D + +V ++
Sbjct: 300 EARRRGSSLYLSRGLLPMFPSKLSSE-----VFSLKAGQRNPAWSTWVDLDASGDVTASG 354
Query: 315 FHKSIIKSKAAMTYEEAQIAID 336
+S + + +TY++A ID
Sbjct: 355 LCRSWVTPRYRLTYDDADELID 376
>UniRef50_Q010V1 Cluster: Ribonuclease II; n=2; Ostreococcus|Rep:
Ribonuclease II - Ostreococcus tauri
Length = 758
Score = 57.2 bits (132), Expect = 7e-07
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 12/203 (5%)
Query: 134 WPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTIPEEER 193
+PR+S L +L + T V + ++ VP EA+ C + +
Sbjct: 291 FPRSSESAL----KLLISTGTWSTHENVSVRKYGVPIDFPQEALDECASILANPPADVDA 346
Query: 194 QKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALD 253
RVDL + ++D G ++DDA+ A L V VH+AD + +V ++ LD
Sbjct: 347 SSRVDLTHLSAYAIDDAGTVEVDDAVSAESLDEG----RIRVWVHVADPSRWVTMNSTLD 402
Query: 254 KEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLST 313
A R+TT+Y + M P ++S + + E A + ++D + N+
Sbjct: 403 ITARGRATTLYYPTELVPMFPLDISAGPMSL----GANAEASEAMTIRADVDADGNIEDF 458
Query: 314 KFHKSIIKSKAAMTYEEAQIAID 336
S++K TY+E +D
Sbjct: 459 DITPSLVKIDRRWTYDEVDAELD 481
>UniRef50_Q5SI46 Cluster: Ribonuclease II family protein; n=3;
Deinococci|Rep: Ribonuclease II family protein - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 598
Score = 56.8 bits (131), Expect = 9e-07
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 12/151 (7%)
Query: 181 LPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIA 240
L P D P + RVDL + ++D G D DDA+ A ++ + + VH+A
Sbjct: 208 LQPPDLPAPPLPEEDRVDLTHLPAFAIDDEGSQDPDDAVFAEKVEGG-----FRLFVHVA 262
Query: 241 DVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSC 300
DV V P + LD+EA R +YL + + M+P V+ + + +VS L F
Sbjct: 263 DVAALVPPKSPLDEEALRRGANLYLPEGTVPMLPPAVT-EALGLGLREVS---PALTFE- 317
Query: 301 VWEMDENANVLSTKFHKSIIKSKAAMTYEEA 331
+W + E +L + + S ++ +TY EA
Sbjct: 318 LW-VSEEGELLEERVYPSWVR-VTRLTYREA 346
>UniRef50_Q2JIR4 Cluster: Exoribonuclease, VacB/RNB family; n=3;
Synechococcus|Rep: Exoribonuclease, VacB/RNB family -
Synechococcus sp. (strain JA-2-3B'a(2-13))
(Cyanobacteria bacteriumYellowstone B-Prime)
Length = 686
Score = 56.8 bits (131), Expect = 9e-07
Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 15/160 (9%)
Query: 172 RFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLA 231
R+++A+L+ PP+ W + R DL + ++D DIDDAL S D +
Sbjct: 265 RYTQALLS-QPPSFW-----DPHLRQDLTHLHTYTIDDASTRDIDDALSVE-FWSDDAVK 317
Query: 232 TYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSC 291
+ +HIAD + +V+ LD EA R T+VYL +R I M P +S T ++Q
Sbjct: 318 LW---IHIADPSCWVQWGDPLDLEARKRGTSVYLPERVIPMFPPELS--TGPMSLVQ--- 369
Query: 292 GEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEA 331
GE R A S + + + ++ S IK +TYE+A
Sbjct: 370 GEVRPALSFGILLGSDGQIRDSEICLSQIKVTYRLTYEDA 409
>UniRef50_A1VBI0 Cluster: Ribonuclease R; n=3; Desulfovibrio|Rep:
Ribonuclease R - Desulfovibrio vulgaris subsp. vulgaris
(strain DP4)
Length = 886
Score = 56.8 bits (131), Expect = 9e-07
Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 17/185 (9%)
Query: 154 DKDAENEVILLEHDVPHARFSEAVLN---CLPPNDWTIPEEERQKRVDLRDVCVCSVDPP 210
D + ++ + H VP F VL LPP + R+DLR + ++D
Sbjct: 216 DVSVQERLVKINHGVP-TEFPVPVLEEAATLPPAPGG---GDFADRIDLRHMEFVTIDGA 271
Query: 211 GCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRI 270
D DDA+ G + + V IADV+H+V+P +A+D+EA RS + Y
Sbjct: 272 RARDFDDAICVEEQGKG-----WRLWVAIADVSHYVRPGSAMDREALERSNSYYFPQSVE 326
Query: 271 DMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEE 330
M+P +S + ++ RLA + KF+ ++I+SKA +TY +
Sbjct: 327 PMLPEALS-----NGLCSLNPRVPRLAMVAEIYFFGEGSPGKCKFYPAVIESKARLTYGQ 381
Query: 331 AQIAI 335
A+
Sbjct: 382 VNRAL 386
>UniRef50_Q7RID0 Cluster: RNB-like protein, putative; n=8; Plasmodium
(Vinckeia)|Rep: RNB-like protein, putative - Plasmodium
yoelii yoelii
Length = 2804
Score = 56.8 bits (131), Expect = 9e-07
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 215 IDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVP 274
IDD + YEVGVHI DV+ FVK +T+LD +A +R+ T+YL M+
Sbjct: 1997 IDDIIQGMNSEQWRKYNLYEVGVHITDVSFFVKENTSLDIDARNRAMTIYLTHTCFPMLS 2056
Query: 275 GNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF--HKSIIKSKAAMTYEE 330
+S + + RL S + MD + + F +++I+SK TYEE
Sbjct: 2057 RILSEN-----LCSLDPINNRLCLSVFFYMDNSGKIDHNTFFIKETVIESKVKFTYEE 2109
Score = 46.0 bits (104), Expect = 0.002
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 21/204 (10%)
Query: 36 IVLEDKTEDPENILEEETVLLDAAKPVDNDDEITPT---GKVVGIIRR--KWRQYCGILM 90
I +E K ED ++ + V++ P ++ + P GKVV I +QY I
Sbjct: 1343 IHIESK-EDLNRAIDGDAVVIKLKNPNRVNNLVKPDKSIGKVVYIEEHYGSTKQYVCIFR 1401
Query: 91 PSKFHGATRHLFTPAEKRIPRVRIETRQSEI---------LASQRILVALDSWPRNSRYP 141
+K ++ P +K IP ++++ + +++Q I + + W ++P
Sbjct: 1402 -NKVKDKKYNVAIPFKKNIPLIQVQNSHIKEFMKKYNVNDISNQLIYIKIFQWSPTEKFP 1460
Query: 142 LGHLVRLFVPTCDKDAENEVILLEH----DVPHARFSEAVLNCLPPNDW-TIPEEERQKR 196
G +V + ILL H ++ A + + + N++ I +E +KR
Sbjct: 1461 EGKIVEILGQNDVFHNMQNAILLNHGLNFNLKKALEDQYLKDLKNKNNYINIITDELKKR 1520
Query: 197 VDLRDVCVCSVDPPGCTDIDDALH 220
+DLR CV ++DP D+DDA++
Sbjct: 1521 MDLRKECVFTIDPETARDLDDAIN 1544
>UniRef50_Q6NQJ6 Cluster: At5g02250; n=3; core eudicotyledons|Rep:
At5g02250 - Arabidopsis thaliana (Mouse-ear cress)
Length = 803
Score = 56.0 bits (129), Expect = 2e-06
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 9/137 (6%)
Query: 195 KRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDK 254
+R+DL + V ++D ++DDAL A RL DG ++ +H+AD +V P + +D+
Sbjct: 398 RRIDLTHLKVYAIDVDEADELDDALSATRL--QDG--RIKIWIHVADPARYVTPGSKVDR 453
Query: 255 EAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTK 314
EA R T+V+L M P +++ + + GE A S + + +
Sbjct: 454 EARRRGTSVFLPTATYPMFPEKLAMEG-----MSLRQGENCNAVSVSVVLRSDGCITEYS 508
Query: 315 FHKSIIKSKAAMTYEEA 331
SII+ +TYE A
Sbjct: 509 VDNSIIRPTYMLTYESA 525
>UniRef50_A4FA45 Cluster: Ribonuclease R; n=4; Actinomycetales|Rep:
Ribonuclease R - Saccharopolyspora erythraea (strain
NRRL 23338)
Length = 490
Score = 55.2 bits (127), Expect = 3e-06
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 10/137 (7%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R D + + +VDPPG D+D A+ RR Y V IADV FV P ALD E
Sbjct: 67 RADATGLPLVTVDPPGAKDLDQAVLVRRRARG-----YRVHYAIADVAAFVPPGGALDAE 121
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
R T+YL D + + P +S QV R A ++D
Sbjct: 122 VRKRGQTLYLPDGNVPLHPTLLSEGAASLLPDQV-----RPAVLWTIDLDREGVPARVDV 176
Query: 316 HKSIIKSKAAMTYEEAQ 332
+++++S A + Y+ Q
Sbjct: 177 RRALVRSVARLDYDGVQ 193
>UniRef50_Q21LP7 Cluster: VacB and RNase II family 3'-5'
exoribonuclease; n=1; Saccharophagus degradans 2-40|Rep:
VacB and RNase II family 3'-5' exoribonuclease -
Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM
17024)
Length = 646
Score = 54.8 bits (126), Expect = 4e-06
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 10/144 (6%)
Query: 187 TIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFV 246
+I EE +R D + ++D P D+DDA+H + DG V IAD F+
Sbjct: 188 SIEAEEFGEREDYTQLPFVTIDSPTTRDMDDAVH---IAEQDGKTVLTVA--IADPASFI 242
Query: 247 KPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDE 306
P + L K A ++ + Y++ I M+P S+ + +++ G++R A C +
Sbjct: 243 APGSPLAKLAERQAQSTYMLGGIIPMLP--ESLANDCFSLVE---GKKRPALVCTITLAN 297
Query: 307 NANVLSTKFHKSIIKSKAAMTYEE 330
+ V KF +++I+SK + Y++
Sbjct: 298 DGAVEDYKFERAVIQSKYKLNYQQ 321
>UniRef50_Q1MQS9 Cluster: Exoribonuclease R; n=1; Lawsonia
intracellularis PHE/MN1-00|Rep: Exoribonuclease R -
Lawsonia intracellularis (strain PHE/MN1-00)
Length = 813
Score = 54.8 bits (126), Expect = 4e-06
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 10/141 (7%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R DLR + ++D D DDA+ +++ V IADV+HFV+ + LD E
Sbjct: 308 RQDLRVIDFVTIDGEDAKDFDDAICVYPTDIG-----WDLWVAIADVSHFVRAGSLLDSE 362
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
A +R + Y M+P +S + EERL + D + + F
Sbjct: 363 ALARGNSYYFPCSVESMLPEFLSND-----FCSLKPKEERLVMATKISFDNDGKTKNVIF 417
Query: 316 HKSIIKSKAAMTYEEAQIAID 336
+I S+A +TYE+ +A++
Sbjct: 418 FPGVISSRARLTYEQVHLALE 438
>UniRef50_A0Y8Y7 Cluster: Exoribonuclease R; n=1; marine gamma
proteobacterium HTCC2143|Rep: Exoribonuclease R - marine
gamma proteobacterium HTCC2143
Length = 663
Score = 54.4 bits (125), Expect = 5e-06
Identities = 37/153 (24%), Positives = 79/153 (51%), Gaps = 12/153 (7%)
Query: 195 KRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDK 254
+R D++D+ ++D D+DDAL+ + S +G + + V IAD F+ ++ LDK
Sbjct: 197 QRKDMQDIPFVTIDAASTRDMDDALYVSK--SDNG---WRLLVAIADPGAFIISNSELDK 251
Query: 255 EAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTK 314
+ A R+ + Y+ I M+P ++ + ++ + R A C +++ +++S
Sbjct: 252 QIAQRAISTYMPGYAIPMLPAKLAND-----LCSLAPDQVRPALICQIDINATGDIVSHN 306
Query: 315 FHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKS 347
++++ SKA ++Y++ +D R D I +
Sbjct: 307 IVEAVMSSKAKLSYDDVSRFLD--QRDDTITSA 337
>UniRef50_Q5CV75 Cluster: Ssd1p/F48E8.6-like RNAseII; n=2;
Cryptosporidium|Rep: Ssd1p/F48E8.6-like RNAseII -
Cryptosporidium parvum Iowa II
Length = 1031
Score = 54.4 bits (125), Expect = 5e-06
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 13/162 (8%)
Query: 190 EEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHF-VKP 248
++ ++ D ++ + ++DPP D+DDA+H + L YEVGVHIADV ++ ++
Sbjct: 377 KQNNRREFDSKEYKIFTIDPPTAKDLDDAIHIK---YDSELMIYEVGVHIADVYYYMLRH 433
Query: 249 DTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENA 308
L T+VYL M+P S + + ++R S + ++++
Sbjct: 434 KELLSSTTKELCTSVYLPHTNFPMLPRVFSSN-----LCSLLPNQKRPTLSVIIKVNQKG 488
Query: 309 NVL-STKFHKSIIKSKAAMTYEEA-QI--AIDDSSRKDEIAK 346
V+ +F II S +Y++ Q+ +D +K++ +K
Sbjct: 489 EVIGEPEFVHGIITSTGKFSYDDVDQLFEIVDQIDKKNKKSK 530
>UniRef50_Q5MZZ6 Cluster: Protein conferring resistance to
acetazolamide Zam; n=2; Synechococcus elongatus|Rep:
Protein conferring resistance to acetazolamide Zam -
Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG
1402/1)(Anacystis nidulans)
Length = 748
Score = 54.0 bits (124), Expect = 6e-06
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 10/219 (4%)
Query: 129 VALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCLPPNDWTI 188
VA+ +P P+G + ++ + + ++I +H++P A +SEA + L T
Sbjct: 184 VAVQRYPLAQLPPVGKVTQILGSDPESASPVDLIRCKHNLP-ADWSEAAIAALTDLAQTA 242
Query: 189 PEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKP 248
Q R+DLR V ++ +D AL + + G S G ++V VH +V ++
Sbjct: 243 DANAIQGRLDLRSVFTVAIAADDSRPLDVAL-SLQPGESGG---WQVMVHTVEVAPYLPL 298
Query: 249 DTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENA 308
+ LD EA + L + + +P ++ ++ + GE+R A S + +D
Sbjct: 299 QSDLDLEAQRHGIDLRLGETALPFLPPVLTQGVGRFAV-----GEDRRAVSLLIRVDATG 353
Query: 309 NVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAKS 347
V + S+++ ++ EA + DS K E K+
Sbjct: 354 AVQDYELQPSLVQLDQVLSPAEATDLLADSKAKGEGIKA 392
>UniRef50_Q4XFQ2 Cluster: Putative uncharacterized protein; n=1;
Plasmodium chabaudi|Rep: Putative uncharacterized
protein - Plasmodium chabaudi
Length = 611
Score = 53.6 bits (123), Expect = 8e-06
Identities = 57/210 (27%), Positives = 91/210 (43%), Gaps = 26/210 (12%)
Query: 36 IVLEDKT---EDPENI---LEEETVLLDAAKPVDNDDEI---TPTGKVVGIIRRKWR--Q 84
I+ EDK E EN+ ++ + V+++ K + DE + TGKVV I Q
Sbjct: 330 IIHEDKQVHIESKENLNRAIDGDVVVVELNKVREGRDETKNKSNTGKVVYIEEHYGSNVQ 389
Query: 85 YCGILMPSKFHGATRHLFTPAEKRIPRVRI---------ETRQSEILASQRILVALDSWP 135
Y I K T ++ P +K IP +++ E E + +Q + + + W
Sbjct: 390 YVCIFR-EKVKDKTYNIAIPFKKNIPLIKVQNNHIKDFMEKSNIEDIGNQLVYIKIFQWN 448
Query: 136 RNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHA---RFSEAVLNCLPPNDWTIP--E 190
++P G +V + ILL H++ + L L D I
Sbjct: 449 STEKFPEGKIVEILGQNDVFHNMQNAILLNHNLNFNLKDALEDQYLKDLKNKDKFIEIVT 508
Query: 191 EERQKRVDLRDVCVCSVDPPGCTDIDDALH 220
EE QKR+DLR CV ++DP D+DDA++
Sbjct: 509 EELQKRMDLRQECVFTIDPETARDLDDAIN 538
>UniRef50_P44440 Cluster: Exoribonuclease 2; n=21;
Pasteurellaceae|Rep: Exoribonuclease 2 - Haemophilus
influenzae
Length = 659
Score = 53.2 bits (122), Expect = 1e-05
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 6/140 (4%)
Query: 192 ERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTA 251
+++ R +L + ++D D+DDAL+ + + +++ V IAD T ++ D+
Sbjct: 185 DQKTRENLTALHFVTIDSESTMDMDDALYIEPIAQNSTQTGWKLVVAIADPTAYIALDSQ 244
Query: 252 LDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVL 311
+++EA R T YL I M+P +S + + E R A C E D N+
Sbjct: 245 IEQEAKQRCFTNYLPGFNIPMLPRELSDE-----LCSLIANETRPALVCYIETDLTGNIT 299
Query: 312 S-TKFHKSIIKSKAAMTYEE 330
+ F + ++SKA + Y +
Sbjct: 300 AKPHFVSAYVQSKAKLAYNK 319
>UniRef50_P57354 Cluster: Exoribonuclease 2; n=6;
Gammaproteobacteria|Rep: Exoribonuclease 2 - Buchnera
aphidicola subsp. Acyrthosiphon pisum (Acyrthosiphon
pisumsymbiotic bacterium)
Length = 649
Score = 53.2 bits (122), Expect = 1e-05
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
Query: 191 EERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDT 250
+E R DL D+ ++D DIDDAL + D + V IAD T ++K +
Sbjct: 185 KESDNRKDLTDLDFITIDNTNTKDIDDALFVSEKNNGD----ISLIVAIADPTAYIKHGS 240
Query: 251 ALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANV 310
LD A+ R T YL I M+P N+S I ++ + R +C + +N N+
Sbjct: 241 KLDVIASKRIFTNYLPGFNIPMLPRNLSED-----ICSLNPNKRRPVLACHITVLKNGNI 295
Query: 311 LS-TKFHKSIIKSKAAMTYE 329
+ +F + IKSK+ ++Y+
Sbjct: 296 SNKIEFFLAWIKSKSKLSYD 315
>UniRef50_A3RLY2 Cluster: Chloroplast ribonuclease; n=1;
Chlamydomonas reinhardtii|Rep: Chloroplast ribonuclease
- Chlamydomonas reinhardtii
Length = 941
Score = 52.0 bits (119), Expect = 3e-05
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 9/147 (6%)
Query: 189 PEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKP 248
P+ + R DL + ++D T++DD L RL G T + +H+AD T ++ P
Sbjct: 506 PDPDAGNREDLTHLRCFTIDDAATTEVDDGLSLERLA---GGGT-RIWIHVADPTRWISP 561
Query: 249 DTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENA 308
DT LD R T+YL + M P ++ + G+ A S E+ +
Sbjct: 562 DTQLDLAGRQRGRTLYLPWGSVPMFPRALAEGP-----FSLRAGQVCDALSVGVELRPDG 616
Query: 309 NVLSTKFHKSIIKSKAAMTYEEAQIAI 335
+V S + S + +TY+ A A+
Sbjct: 617 SVASARVAPSRVLVSHKLTYDGADAAL 643
>UniRef50_Q54IW8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 960
Score = 52.0 bits (119), Expect = 3e-05
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 206 SVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYL 265
++D D+DDA+ +G Y V VHIADVT VKP + DK +S+++YL
Sbjct: 544 AIDSESTKDVDDAIGL----IDEGNGEYSVIVHIADVTDIVKPHSDHDKWGQFKSSSIYL 599
Query: 266 VDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAA 325
+ M+P +++ L +S + S +++ ++ K SI+ +
Sbjct: 600 PHKTYFMLPNSIT------NHLSLSPNKSNKCLSFQFKVSNKGEIIDYKIFPSIVNNLIK 653
Query: 326 MTYEEAQIAIDDSS 339
+Y + + ++ DS+
Sbjct: 654 TSYNKVENSLLDSN 667
>UniRef50_Q82U76 Cluster: Ribonuclease II domain; n=5;
Betaproteobacteria|Rep: Ribonuclease II domain -
Nitrosomonas europaea
Length = 619
Score = 51.2 bits (117), Expect = 5e-05
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 206 SVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYL 265
S+D T+IDDA L ++ +G+HIA V P + LDK AA R +TVYL
Sbjct: 250 SIDDATTTEIDDAFSVTPLN----FGSFRIGIHIATPALGVAPHSLLDKFAAKRLSTVYL 305
Query: 266 VDRRIDMVPGNV 277
R+I M+P +V
Sbjct: 306 PGRKITMLPESV 317
>UniRef50_A6DTA8 Cluster: Putative ribonuclease R; n=1; Lentisphaera
araneosa HTCC2155|Rep: Putative ribonuclease R -
Lentisphaera araneosa HTCC2155
Length = 754
Score = 51.2 bits (117), Expect = 5e-05
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 193 RQKRVDLRDVC---VCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPD 249
RQ+++ RD+ + ++DP D DDAL + + +G+HIADV ++ P
Sbjct: 225 RQRKIARRDLTKELITTIDPRDAKDFDDALSVHPAKNKKHIT---IGIHIADVAAYIGPR 281
Query: 250 TALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMD-ENA 308
+ L R+ T YL R + M+P V V+ + +++ E + A + + D E+
Sbjct: 282 STLMTSIKKRAFTAYLPGRMLPMLP-KVLVSK-RCSLIE---NEVKPAHTVMITFDRESG 336
Query: 309 NVLSTKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAK 346
V++ + S IK + + Y+E Q D + D K
Sbjct: 337 EVINFERFHSTIKVRKRLNYQEVQDYADANFSGDPWGK 374
>UniRef50_A3S2U2 Cluster: Exoribonuclease R/ribonuclease II; n=1;
Prochlorococcus marinus str. MIT 9211|Rep:
Exoribonuclease R/ribonuclease II - Prochlorococcus
marinus str. MIT 9211
Length = 427
Score = 51.2 bits (117), Expect = 5e-05
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 198 DLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAA 257
DL + ++D +IDD + L +S ++ VHIA ++ + +D EA+
Sbjct: 31 DLTHLKTYTIDDIDSAEIDDGVSIEYLDNST-----KIWVHIASPAEYLSFEDPIDIEAS 85
Query: 258 SRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHK 317
++ T YL + M+P ++ VT +L + G A S E++ ++S+ ++
Sbjct: 86 LKAATCYLPESPEYMLPNDL-VTK----LLSLKPGRISAALSVSAEINSAGEIVSSNLYR 140
Query: 318 SIIKSKAAMTYEEAQIAID 336
+IIK A+TYE+A +D
Sbjct: 141 TIIKPTIALTYEDADDILD 159
>UniRef50_A1WBZ0 Cluster: Ribonuclease II; n=9; Burkholderiales|Rep:
Ribonuclease II - Acidovorax sp. (strain JS42)
Length = 695
Score = 50.4 bits (115), Expect = 8e-05
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 199 LRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAAS 258
L DV S+D T+IDDAL + LG+ T +G+HIA ++P LDK +
Sbjct: 238 LADVQAYSIDDSATTEIDDALSVQGLGTG----TVTLGIHIAAPGLAIQPGGDLDKLGRT 293
Query: 259 RSTTVYLVDRRIDMVPGNV 277
R +TVY+ +I M+P V
Sbjct: 294 RLSTVYMPGYKITMLPDEV 312
>UniRef50_O74454 Cluster: Protein sts5; n=1; Schizosaccharomyces
pombe|Rep: Protein sts5 - Schizosaccharomyces pombe
(Fission yeast)
Length = 1066
Score = 50.4 bits (115), Expect = 8e-05
Identities = 64/270 (23%), Positives = 109/270 (40%), Gaps = 42/270 (15%)
Query: 102 FTPAEKRIPRVRIETRQS--------EILASQRILVALDSWPRNSRYPLGHLVRLFVPTC 153
F P++KR+P + I T Q+ + A + L ++ WP S +P G LV
Sbjct: 484 FKPSDKRVPLIAIPTEQAPTDFLGNDQAYAQRLFLASIKRWPVTSLHPFGMLVGELGSMD 543
Query: 154 DKDAENEVILLE---HDVPH----ARFSEAVLNCLPPNDWTIP--EEERQKRVDL---RD 201
A+ +L + H P A + LN L N + + R + V L D
Sbjct: 544 SMSAQVSALLHDTGVHSEPWEGSAATSAVTALNALSDNFLNVAGCADYRSEDVFLFVKND 603
Query: 202 VCVCSV----------DPPGCTD-IDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDT 250
V +V + TD + A H R +S G Y VG+H+ DV+ ++P +
Sbjct: 604 VSKAAVSEVKQHESNINSSSATDFVSSAFHIRP--TSTG---YHVGIHVTDVSRVIEPGS 658
Query: 251 ALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANV 310
LD+E RS V L + + + P T L + ++ S + ++ +
Sbjct: 659 PLDRELQRRSIAVNLCQKSVPLFP------TTLGEALSLREDKDCYTMSLLLDVSSTGKI 712
Query: 311 LSTKFHKSIIKSKAAMTYEEAQIAIDDSSR 340
T ++I+ + A T +EA + +R
Sbjct: 713 RGTWIGWAVIRPRKAYTMKEADELLQTDAR 742
>UniRef50_A6PKV3 Cluster: Ribonuclease II; n=1; Victivallis vadensis
ATCC BAA-548|Rep: Ribonuclease II - Victivallis vadensis
ATCC BAA-548
Length = 755
Score = 50.0 bits (114), Expect = 1e-04
Identities = 40/104 (38%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 171 ARFSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGL 230
ARF A N P +PEE KR DL + ++D G D DDA+ G +DGL
Sbjct: 359 ARFDVAPDNPAIPLG-PLPEE---KRADLTGMVSYAIDDEGSNDPDDAV-----GFADGL 409
Query: 231 ATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVP 274
V VH+AD V PD+ D EA R +YL +R M+P
Sbjct: 410 ----VWVHVADPAAVVTPDSPADLEARERGENLYLPERISHMLP 449
>UniRef50_Q1MTN7 Cluster: 3'-5' exonuclease for RNA 3' ss-tail; n=1;
Schizosaccharomyces pombe|Rep: 3'-5' exonuclease for RNA
3' ss-tail - Schizosaccharomyces pombe (Fission yeast)
Length = 957
Score = 50.0 bits (114), Expect = 1e-04
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
Query: 195 KRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDK 254
+RVDLR + + D +IDDA+ LG S+ + +H+A+ T V + L
Sbjct: 502 QRVDLRHLKAFAFDSSSTKEIDDAISVEELGMSNSW----LHIHVANPTSTVDIRSPLGT 557
Query: 255 EAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEER-LAFSCVWEMDENANVLST 313
A T+Y ++ + M+P N+ T KY+ L S +R L FS ++ +N ++L
Sbjct: 558 FAERNFQTIYHPNKIVYMLPLNI---TQKYWSLDSSSTAQRALTFSA--KISKNGDILDY 612
Query: 314 KFHKSIIKSKAAMTYEEAQIAI 335
K S I S T ++ A+
Sbjct: 613 KVRPSFISSVIKYTPQQLDKAL 634
>UniRef50_Q9K185 Cluster: Ribonuclease II-related protein; n=6;
Neisseriaceae|Rep: Ribonuclease II-related protein -
Neisseria meningitidis serogroup B
Length = 626
Score = 49.6 bits (113), Expect = 1e-04
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Query: 201 DVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRS 260
DV S+D T++DDAL L + T VG+HIA + VKP ++K R
Sbjct: 238 DVTAFSIDDESTTEVDDALSLTDLDNG----TKRVGIHIAAPSLAVKPGDKMEKNIMERL 293
Query: 261 TTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANV 310
+TVY +I M+P N + G R A S +++D NV
Sbjct: 294 STVYFPGGKITMLPENWIAA------FSLDAGAHRPAVSIYFDVDGEFNV 337
>UniRef50_Q129F3 Cluster: Exoribonuclease II; n=6; cellular
organisms|Rep: Exoribonuclease II - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 492
Score = 49.6 bits (113), Expect = 1e-04
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 198 DLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAA 257
DLR + S+D D+D A L + + + V +ADV V+P A+D AA
Sbjct: 47 DLRHLTWFSIDNDDTRDLDQLSVAEPLAAG----STRLRVAVADVDAMVRPGGAVDGHAA 102
Query: 258 SRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHK 317
+T+VY M+P +S + + G+ERLA +++ + V + ++
Sbjct: 103 VNTTSVYTAAGVFPMLPEVLSTD-----LTSLHEGQERLAVVVDMQVEADGTVSESTIYR 157
Query: 318 SIIKSKAAMTYEEAQIAIDD 337
+ + ++A +TY+ +DD
Sbjct: 158 AAVLNRAKLTYDAVSAWLDD 177
>UniRef50_Q553P9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1328
Score = 49.6 bits (113), Expect = 1e-04
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 20/159 (12%)
Query: 198 DLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAA 257
DLRD+ +++ +I A ++ S DG T + VH D T F++ + LDK A
Sbjct: 549 DLRDLLCFTIEQDNNNNISYAFSFKK--SLDGKVT--IFVHFLDCTSFIEIGSTLDKIAC 604
Query: 258 SRSTTVYL--VDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWE---MDENANVLS 312
++ +DR +D++ L +S G+ER F+ W ++ +S
Sbjct: 605 MNGISIDFGGIDR-VDIIDQEFITQN-----LSLSPGKERKCFTVEWSFGGLNHIGESVS 658
Query: 313 TKFHKSIIKSKAAMTYEEAQ-----IAIDDSSRKDEIAK 346
+ HKSIIKS ++Y + Q + IDD D+ +K
Sbjct: 659 RRIHKSIIKSTTNLSYSQVQNIFKGLPIDDKLEIDQDSK 697
>UniRef50_A5GTC0 Cluster: Exoribonuclease R/ribonuclease II; n=1;
Synechococcus sp. RCC307|Rep: Exoribonuclease
R/ribonuclease II - Synechococcus sp. (strain RCC307)
Length = 655
Score = 49.2 bits (112), Expect = 2e-04
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 10/148 (6%)
Query: 195 KRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDK 254
+R DL + S+D ++DDA+ R DG + VHIAD +++P LD
Sbjct: 254 QRRDLTHLSCFSIDSASTQEVDDAIGLER---RDG--DLWIWVHIADPHQWLEPGDRLDL 308
Query: 255 EAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTK 314
EA R +T+YL + M P V+ + ++ CG A S +D + + + K
Sbjct: 309 EAQRRGSTLYLSGGAMPMFPMAVARDCMSLRPMR-RCG----ALSVGVLLDADGAITAVK 363
Query: 315 FHKSIIKSKAAMTYEEAQIAIDDSSRKD 342
+S +K +TYE+A I+ + +D
Sbjct: 364 PCRSWVKVSYGLTYEDADDLIELAPPED 391
>UniRef50_A0Z0P5 Cluster: Exoribonuclease R; n=3; Bacteria|Rep:
Exoribonuclease R - marine gamma proteobacterium
HTCC2080
Length = 688
Score = 49.2 bits (112), Expect = 2e-04
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
Query: 195 KRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDK 254
+RVDL + S+D DIDDAL+A +S+G Y V +AD T ++ LD+
Sbjct: 229 ERVDLSHLNFVSIDAARTQDIDDALYAE--VTSEGWVLY---VAVADPTAYLDGMEGLDE 283
Query: 255 EAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTK 314
S +T+ Y + M+P + +S GE R + C + + V S +
Sbjct: 284 TLTSIATSTYFHGDVLPMLP-----EAIGRDFCALSEGEARPSLVCKINVSDAGQVGSYE 338
Query: 315 FHKSIIKSKAAMTY 328
F ++ I+SKA +TY
Sbjct: 339 FIQAKIQSKAKLTY 352
>UniRef50_Q4C5D6 Cluster: Exoribonuclease II; n=6;
Chroococcales|Rep: Exoribonuclease II - Crocosphaera
watsonii
Length = 633
Score = 48.8 bits (111), Expect = 2e-04
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
Query: 206 SVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYL 265
++D D+DDAL + + G + VHI+DV+ ++P ++L+ A S+ T YL
Sbjct: 32 TIDGETSKDLDDALWLQP--NPSGAV---ISVHISDVSAIIQPGSSLEAHALSQVETRYL 86
Query: 266 VDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHKSIIKSKAA 325
+ I M P +S K +L+ + RL + +D ++N+ T H + + S
Sbjct: 87 ATKNIPMFPHELSED--KLSLLE---DKLRLTVTIRITLDSHSNIKETSLHLTHLTSLKR 141
Query: 326 MTYEEAQIAIDDSS 339
+Y A ++ D S
Sbjct: 142 FSYTSADASLHDPS 155
>UniRef50_Q4JWH5 Cluster: Putative ribonuclease R; n=1;
Corynebacterium jeikeium K411|Rep: Putative ribonuclease
R - Corynebacterium jeikeium (strain K411)
Length = 492
Score = 48.4 bits (110), Expect = 3e-04
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 190 EEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRL----------GSS--DGLATYEVGV 237
++ ++R DLRDV ++DP G D+D A++ + GS+ DG A + V
Sbjct: 36 DQHAEQRRDLRDVPFVTIDPAGSMDLDQAVNIQDAPDGGAGGAGAGSAAGDGTARWRVLY 95
Query: 238 HIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVS 278
IADV FV P L E+ R T+YL D + P +S
Sbjct: 96 AIADVAAFVDPAGPLMAESLQRGQTMYLPDEPTRLHPAELS 136
>UniRef50_A4SVC2 Cluster: Ribonuclease II; n=1; Polynucleobacter sp.
QLW-P1DMWA-1|Rep: Ribonuclease II - Polynucleobacter sp.
QLW-P1DMWA-1
Length = 676
Score = 48.0 bits (109), Expect = 4e-04
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 201 DVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRS 260
DV S+D G T+IDDAL L + + +G+HIA + D LD+ A +R
Sbjct: 249 DVKAFSIDDSGTTEIDDALSVSTLAAGG----HRIGIHIAAPGLAIAKDDPLDQVARNRM 304
Query: 261 TTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANV 310
+TVY +I M+P V ++ + L G R A S ++DE+ V
Sbjct: 305 STVYFPGDKITMLPDVV----IEQFSLDE--GSARPALSIYVDIDEDGVV 348
>UniRef50_A7I6H4 Cluster: Ribonuclease II; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribonuclease II -
Methanoregula boonei (strain 6A8)
Length = 497
Score = 47.6 bits (108), Expect = 6e-04
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 198 DLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAA 257
DLR + S+D D+D + R DG T V + IADV +VK + D+ AA
Sbjct: 55 DLRALLWSSIDNHDSQDLDQLEYCER--KPDG--TIRVMIAIADVDSYVKAHSPTDEYAA 110
Query: 258 SRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFHK 317
T+VY M+P +S Y + + ++RLA + + + + H+
Sbjct: 111 HNGTSVYTGIVTYPMLPERLS-----YNLTSLLQDKDRLAVIIEFTVHPEGSFTPGEVHR 165
Query: 318 SIIKSKAAMTYE 329
+++++KA + YE
Sbjct: 166 ALVRNKAKLVYE 177
>UniRef50_A7BS42 Cluster: Exoribonuclease II; n=1; Beggiatoa sp.
PS|Rep: Exoribonuclease II - Beggiatoa sp. PS
Length = 433
Score = 47.2 bits (107), Expect = 7e-04
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 206 SVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAASRSTTVYL 265
S+D ++DDAL R GS +++ + IAD + LDKEA R TTVYL
Sbjct: 296 SIDDEDTREVDDALSIEREGS-----LWKITIAIADPASVIHRGEILDKEAMRRGTTVYL 350
Query: 266 VDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSC-VWEMDENANVLSTKFHKSIIKSKA 324
+ I M+P VS I +S R + VW MD+ + + ++ I+
Sbjct: 351 PTQTILMLPEPVSCD-----IASLSAEHIRSSLVIRVW-MDKQGEITDSHINREAIRVLR 404
Query: 325 AMTYEEAQIAIDD 337
+ Y +A I +
Sbjct: 405 RLHYSDADQLITE 417
>UniRef50_P59107 Cluster: Exoribonuclease 2; n=42;
Gammaproteobacteria|Rep: Exoribonuclease 2 - Shigella
flexneri
Length = 644
Score = 47.2 bits (107), Expect = 7e-04
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 10/141 (7%)
Query: 191 EERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDT 250
+E R DL + ++D D+DDAL A+ L D L ++ V IAD T ++ +
Sbjct: 184 DEGLVREDLTSLDFVTIDSASTEDMDDALFAKAL-PDDKL---QLIVAIADPTAWIAEGS 239
Query: 251 ALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANV 310
LDK A R+ T YL I M+P +S + + E R +C + + +
Sbjct: 240 KLDKAAKIRAFTNYLPGFNIPMLPRELSDD-----LCSLRANEVRPVLACRMTLSADGTI 294
Query: 311 L-STKFHKSIIKSKAAMTYEE 330
+ +F + I+SKA + Y++
Sbjct: 295 EDNIEFFAATIESKAKLVYDQ 315
>UniRef50_A3TM00 Cluster: Putative ribonuclease R; n=1; Janibacter
sp. HTCC2649|Rep: Putative ribonuclease R - Janibacter
sp. HTCC2649
Length = 481
Score = 46.8 bits (106), Expect = 0.001
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 14/141 (9%)
Query: 198 DLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEAA 257
D V ++DP D+D A+ R G Y V IADV FV P A+D E+
Sbjct: 62 DETSVPFVTLDPATSMDLDQAMCLERDGQG-----YRVRYAIADVPAFVAPGGAIDTESR 116
Query: 258 SRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWE--MDENANVLSTKF 315
R T+Y D R+ + P +S + G+ R AF VW+ +D +
Sbjct: 117 RRGQTIYCPDVRVPLHPPVLSEGAA-----SLLPGQVRPAF--VWDIRLDAEGEQTGAEL 169
Query: 316 HKSIIKSKAAMTYEEAQIAID 336
+++ +KS Y Q ID
Sbjct: 170 YRARVKSVERFDYVGVQEQID 190
>UniRef50_A3PCZ0 Cluster: Probable ribonuclease II; n=5;
Prochlorococcus marinus|Rep: Probable ribonuclease II -
Prochlorococcus marinus (strain MIT 9301)
Length = 394
Score = 46.4 bits (105), Expect = 0.001
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 15/185 (8%)
Query: 198 DLRDVCVCSVDPPGCTDIDDALHAR-RLGSSDGLATYEVGVHIADVTHFVKPDTALDKEA 256
DL D+ +D ++DDA+ + G+ L +HI++ D+ +D A
Sbjct: 3 DLTDLKTYIIDSDDPHEVDDAISLEIKEGNKKNL-----WIHISNPCKLFLHDSNVDLNA 57
Query: 257 ASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKFH 316
R++++YL+D+ + M+P ++ K + Q E S E +++ ++ +
Sbjct: 58 RKRNSSLYLIDQYVPMLPNDI---LEKANLAQNKVSE---TISAAIEFNDDGSINKYEIT 111
Query: 317 KSIIKSKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXXXXXXXXDSGALLLASPEIR 376
++IIK K +TYE+A I + K+EI GA++ SP +
Sbjct: 112 EAIIKPKYQLTYEDAN-EILEIEPKEEI--ELIEIKNLLKKSITFRKKQGAIIFESPNNK 168
Query: 377 FQFFK 381
+ F+
Sbjct: 169 IKLFE 173
>UniRef50_A6R486 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 909
Score = 46.4 bits (105), Expect = 0.001
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R D D+ V VD +IDD + SD TY V VH+A+ + FV PD + K
Sbjct: 498 RKDWGDLPVFCVDDVHAAEIDDGFSVEPIPGSDD--TYWVHVHVANPSAFVPPDHIVAKR 555
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
AA + Y +R M+P KY+ L + G L FS +++ ++L T
Sbjct: 556 AAEFKRSFYSPERVYSMLP---PALVHKYFSL--APGRPTLTFSA--KINMLGDILETNI 608
Query: 316 HKSIIKS 322
IK+
Sbjct: 609 TNGYIKN 615
>UniRef50_A5DYU5 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 1155
Score = 46.4 bits (105), Expect = 0.001
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
RVD+ +V V +D +IDD + + Y + HIA+ + F+KPD+ L
Sbjct: 656 RVDMTEVPVYCIDDASAHEIDDGISIH-----EEKGEYVISTHIAEPSSFIKPDSPLSSI 710
Query: 256 AASRSTTVYLVDRRIDMVP 274
A R++T Y + + M P
Sbjct: 711 ALERASTTYFPENVVPMFP 729
>UniRef50_Q98NP8 Cluster: Ribonuclease; n=3; Bacteria|Rep:
Ribonuclease - Rhizobium loti (Mesorhizobium loti)
Length = 460
Score = 45.2 bits (102), Expect = 0.003
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 195 KRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDK 254
+ VD + ++DP TD+D A SSD L Y IADV FV+ ALD+
Sbjct: 46 QHVDRTAMPFVTLDPAASTDLDQAFSIEA-SSSDLLLHYA----IADVAWFVEDGDALDR 100
Query: 255 EAASRSTTVYLVDRRIDMVP 274
EA +R T+YL D + + P
Sbjct: 101 EAWARGETLYLPDGKAGLYP 120
>UniRef50_Q59Y80 Cluster: Putative uncharacterized protein MSU1;
n=2; Candida albicans|Rep: Putative uncharacterized
protein MSU1 - Candida albicans (Yeast)
Length = 1146
Score = 44.8 bits (101), Expect = 0.004
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R D+R++ + +D P +IDD + + Y V +H+A+ + ++KP++ +
Sbjct: 640 RQDMREIPIYCIDDPTAHEIDDGISIH-----EDQQDYIVSIHVAEPSSYIKPNSIISSL 694
Query: 256 AASRSTTVYLVDRRIDMVPGNVS 278
A +++T Y+ D ++P VS
Sbjct: 695 AFEKTSTSYMPDTAFPLLPKLVS 717
>UniRef50_P47950 Cluster: Mitochondrial protein cyt-4; n=1;
Neurospora crassa|Rep: Mitochondrial protein cyt-4 -
Neurospora crassa
Length = 1117
Score = 44.8 bits (101), Expect = 0.004
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 10/140 (7%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R D V +D P +IDD + L +D Y + VHIAD T ++PD++L K
Sbjct: 561 RQDFYTSTVYCIDAPNAKEIDDGVS---LEKTDKEGEYWIHVHIADPTSRIRPDSSLAKR 617
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMDENANVLSTKF 315
AA + T YL M+ V ++ G L FS ++E +L K
Sbjct: 618 AALMTQTSYLPGHVDKMISDEAVVAE-----FSLAPGRPSLTFSA--RLNEEGTLLDHKV 670
Query: 316 HKSIIKSKAAMTYEEAQIAI 335
I +T ++ A+
Sbjct: 671 TPGRIGDVVYITPQDVATAV 690
>UniRef50_Q8I389 Cluster: Putative uncharacterized protein PFI0295c;
n=2; Plasmodium|Rep: Putative uncharacterized protein
PFI0295c - Plasmodium falciparum (isolate 3D7)
Length = 1807
Score = 44.4 bits (100), Expect = 0.005
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSS----DGLATYEVGVHIADVTHFVKPDTA 251
R + D+ + ++DP D+DDAL + + + Y++G+HI+DV+ FV P++
Sbjct: 870 RYIITDLDIFTIDPTKAKDLDDALSIEFIKDNKEQHELKYRYKIGIHISDVSFFVTPNSY 929
Query: 252 LDKEAASRSTTVYL 265
D A+ TVY+
Sbjct: 930 YDNLASKICNTVYM 943
>UniRef50_Q5K8S9 Cluster: Exoribonuclease II, putative; n=1;
Filobasidiella neoformans|Rep: Exoribonuclease II,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 999
Score = 44.4 bits (100), Expect = 0.005
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 7/142 (4%)
Query: 196 RVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKE 255
R+D D V +D +++DD + R+ +S+ + + VH+AD T ++ P L K
Sbjct: 495 RIDYSDQKVYVIDDATASELDDGIALERILNSEDVWVH---VHVADPTRYIPPAHPLAKR 551
Query: 256 AASRSTTVYLVDRRIDMVPGNVSVTTVKY-YILQVSCGEER-LAFSCVWEMDENANVLST 313
A+ +++YL + + P +V + + +Q G + + FS + ++ V T
Sbjct: 552 ASVMGSSLYLPEGNSPLFPSDVIMRELSLGASVQRDEGRQGVITFSA--RVGKDGEVHDT 609
Query: 314 KFHKSIIKSKAAMTYEEAQIAI 335
K + IK +TY A+
Sbjct: 610 KVNLGWIKKPRVVTYSSVDRAL 631
>UniRef50_P56123 Cluster: Ribonuclease R; n=4; Helicobacter|Rep:
Ribonuclease R - Helicobacter pylori (Campylobacter
pylori)
Length = 644
Score = 44.4 bits (100), Expect = 0.005
Identities = 45/177 (25%), Positives = 85/177 (48%), Gaps = 18/177 (10%)
Query: 173 FSEAVLNCLPPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLAT 232
FS+ LN L + + + + R++ + ++DP D DDA+ +
Sbjct: 189 FSKDCLN-LAQHYAQLKASDFKDRINYSHIPFITIDPKDAKDFDDAIFYDQ-------EK 240
Query: 233 YEVGVHIADVTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCG 292
+ V +ADV+ FV ++LDKEA R +VY + M+P ++S +
Sbjct: 241 RVLFVAVADVSEFVPKHSSLDKEARVRGFSVYFPNSVYPMLPLSLSQGA-----CSLKAF 295
Query: 293 EERLAFSCVWEMDENANVLSTKFHKSIIKSKAAMTYEEAQ--IAIDDSSRKDEIAKS 347
E+RLA V+E+ + N+ + + + +I+ +A TYEE ++ + SS ++ +S
Sbjct: 296 EKRLAL--VYEIPLD-NLKNARLSQGVIEVRANCTYEEINHFLSANQSSLDKDLQQS 349
>UniRef50_Q8DHS2 Cluster: Protein conferring resistance to
acetazolamide; n=1; Synechococcus elongatus|Rep: Protein
conferring resistance to acetazolamide - Synechococcus
elongatus (Thermosynechococcus elongatus)
Length = 754
Score = 43.6 bits (98), Expect = 0.009
Identities = 45/220 (20%), Positives = 97/220 (44%), Gaps = 15/220 (6%)
Query: 122 LASQRILVALDSWPRNSRYPLGHLVRLFVPTCDKDAENEVILLEHDVPHARFSEAVLNCL 181
+ Q + V + +P P G + ++ ++I +H++ +F+ A+
Sbjct: 174 VVDQLVHVHIRRYPLGGYLPTGEIGQILGSDAQSAPILDLICCKHNLVR-QFNPALRTAA 232
Query: 182 PPNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIAD 241
+ + + R DLR++ ++ PG + A LG +++G+HI+D
Sbjct: 233 ATLNAQLETLDFSDRQDLRELVTITLVAPG-QEPQVAFSLDGLGPD----LWQLGIHISD 287
Query: 242 VTHFVKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCV 301
V + D LD+ A + ++ + + ++P + L++ G +R A S +
Sbjct: 288 VGGLLPRDELLDRTARRQGMSLATPELSLPLLPQELET-------LRLLPGGDRAAISLL 340
Query: 302 WEMDENANVLSTKFHKSIIKSKAAMTYEE--AQIAIDDSS 339
++ V S + ++S I+ A +T E+ A +A+ DSS
Sbjct: 341 IVLNTAGEVQSYRIYRSCIRVDACVTSEQVAATLALGDSS 380
>UniRef50_A1SWZ6 Cluster: Exoribonuclease II; n=2; Psychromonas|Rep:
Exoribonuclease II - Psychromonas ingrahamii (strain 37)
Length = 656
Score = 43.2 bits (97), Expect = 0.012
Identities = 36/162 (22%), Positives = 76/162 (46%), Gaps = 12/162 (7%)
Query: 186 WTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHF 245
W I + + R DL ++D D+DDAL+ +G +++ V I+D + +
Sbjct: 181 WKIIDPQLS-RSDLTKTPFFTIDGVNTQDMDDALYIE--ADENG---WKLTVAISDPSAY 234
Query: 246 VKPDTALDKEAASRSTTVYLVDRRIDMVPGNVSVTTVKYYILQVSCGEERLAFSCVWEMD 305
V ++ +D EA R+ T+YL + + M+P ++S + + + GE+R C ++
Sbjct: 235 VPENSDMDAEAKRRAFTLYLPNFNVPMLPRDLSDS-----LCSLKEGEKRATLCCTIHIN 289
Query: 306 ENANVL-STKFHKSIIKSKAAMTYEEAQIAIDDSSRKDEIAK 346
+ + F+ + IKS + Y + +++ ++ K
Sbjct: 290 KKGEIEGEPAFYGAWIKSHYRLNYTDVSNYLENEELSNDCWK 331
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.319 0.136 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 417,071,189
Number of Sequences: 1657284
Number of extensions: 17312405
Number of successful extensions: 38824
Number of sequences better than 10.0: 283
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 37987
Number of HSP's gapped (non-prelim): 376
length of query: 390
length of database: 575,637,011
effective HSP length: 102
effective length of query: 288
effective length of database: 406,594,043
effective search space: 117099084384
effective search space used: 117099084384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 73 (33.5 bits)
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